TCONS_00017722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017722
Unique NameTCONS_00017722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017722 ID=TCONS_00017722|Name=TCONS_00017722|organism=Clytia hemisphaerica|type=transcript|length=284bp
ttattattatttctGTGATATCGACCATTTCTATCTCCTTTGTCCCTTTG
TTTAAAACAGATCGACACGTGATGTCTTCCTTTACaagaaaaacaattga
aattggTTTTGTAATTGTTCGCACTGTGACTGCCCTTTAAATAAACAAAG
CATCTTCTCTCAATTTGTAGAATTCTTTTTCTCTCATTTACGTTTTTAAT
AAAAGAGCAATTTTGTTCTTTGTGTCCCGACCTATTacaaaatacacaat
ttctcgaAATGTTTTTGGACTCACTTCCTGTATA
Run BLAST on NCBI

transcript from alignment at sc0000273:301233..301516

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017722 ID=TCONS_00017722|Name=TCONS_00017722|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at sc0000273:301233..301516 (Clytia hemisphaerica)
TATACAGGAAGTGAGTCCAAAAACATTtcgagaaattgtgtattttgtAA
TAGGTCGGGACACAAAGAACAAAATTGCTCTTTTATTAAAAACGTAAATG
AGAGAAAAAGAATTCTACAAATTGAGAGAAGATGCTTTGTTTATTTAAAG
GGCAGTCACAGTGCGAACAATTACAAAAccaatttcaattgtttttcttG
TAAAGGAAGACATCACGTGTCGATCTGTTTTAAACAAAGGGACAAAGGAG
ATAGAAATGGTCGATATCACagaaataataataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009922XLOC_009922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017722-exon-sc0000273-1491911889:301233..301516TCONS_00017722-exon-sc0000273-1491911889:301233..301516Clytia hemisphaericaexon
TCONS_00017722-exon-sc0000273-1510915933:301233..301516TCONS_00017722-exon-sc0000273-1510915933:301233..301516Clytia hemisphaericaexon
TCONS_00017722-exon-sc0000273-1575043694:301233..301516TCONS_00017722-exon-sc0000273-1575043694:301233..301516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:301233..301516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76876	3.78519	0.206912	0	3.79955	2.50205	8.45212	8.83668	0.791417	0.921809	0.47575	0.31274	2.46782	1.7187	2.9784	2.88265	4.40403	6.5338	2.0105	1.54241	2.85205	3.04169	1.07683	3.7781	6.05004	3.59968	0	1.11166	1.32232	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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