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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017718 ID=TCONS_00017718|Name=TCONS_00017718|organism=Clytia hemisphaerica|type=transcript|length=2078bp
TGTTGGCTAAAGTACATATTCCTgcaccaaatttgaatttcgattaTAAT
AATTAATAGATTAAAATTGCATtgttaaaatatcaaaatttaacaaataa
attcattttcataaaatacaTAGACTTTTGGATTAACTAATATAAAAGAT
TatcttaaaaagttaaaatcgtATTAAATAATAAACAATACATTTTCCGT
ATCAataatatctttaaataataaaaccaataatgataaaaataaacTAG
CGTATTATTTCGAATTGAACCTTGTGCTCTTAGAGATTtttcttattata
aaaaaagcgtgaaaaaaaatctgtaaatctGTAATCCTCAGATAAAAAGA
AACATCGATACTGATTTAGACACTGAAAGTTTTGAATCGCTTACGATTTA
GTTCTGTATCAAGAGAATGTCTAAATCGTGGTATAACTTCAAGACCTGGT
GAATCAGTAATGGTAACTTCAACATTTGTTTCAGCTTTGGCTTGCTGGAG
CAGTTGGATAATAGATTCTTCAGAGTATAAGACACAAACTGTATCCAAAT
GGTTGCAAGATTTGAAGAAGTTGACAAAAGTCGTACGATATTCTGAGACC
TTTGAACGAGGAATTTTAGAGCACTTAACCAAGATCAGTTTTTGTAGGAT
TCGGCAATGTTGGGAACAGCTTTGGAAGACTTTAATCCATTCATTACATA
TAGTTTCTTCAGAAAGCAGCAAAGATCCACATTCCAAGTGTAGTAAATGT
ggtaaaaacttcaaaacactTTCAATGGCTGCGTAACTAATTTTGAAACA
ACTTCGTAATgataaaaacttcaaattgtaGCATCTCTCAAAATAAGGCA
GAGCATCATTGGTAAATTTGTTACAGAATCTCAAACATAACACCTCCAGT
TTGGTCCACGTGCTTCGTtcaaaaacagctttaaaaacaGCTGCAGTTAC
TGCTTTGCTTTTACCAACATTGTGTAAAGCTAAATGATGCAATGTTGAGA
TCTTTGGTAAACTTCCTGTTAAAGCATCAGCATCGATATTCAAGCAAAAG
CTTAAATCTAACTCTTCAATAACCGATTCTTCCCAAGGTGTCTGTAAAAG
CCATTCACCGCTGACATTCGTTTCAGAGAGATTCAacgattttaaacttt
tcgaattttcaaTTAAATACGGTAGAGAAGAGCCTATAATATTATTGCAT
TTGGTCAAAACCAGAGATTCGATACATTTCAGCTCATTAGCAAAAAGTTT
GATCTGATTATCATCAATCGTCGGGCAATGTACACATTCTAATACCCTCA
AAGCGTGCATTTTACGAAAAATAGTATGGAACTCTGTAAAAGCTGGACAA
AAATCATTATTGCCAAAACCAAAGCATTCTAAGTGGCTCATATCACTTGC
TTCTAAAATCAAATGCACAAAATAAAAACCTTGTTTGAAATTGCGTACAT
CGAGTCGAACAAGCTTCTCGGGGACTGTTGACAGATTACTGATTTCATCA
GTCTGGGAATCTTGCATTAAGCAATTCTGGAGCACCAAAGTATCCAGTTG
CTGGCAATGCTCTGATAACTCATTCATTATAACAGGAGTGATTTCACGGT
TGGATAAATCAAGAGACTTTAGTAAAGGTGACAATCTGGCTTGAATGAGG
TTTACAATGTGACGTTCATTAATTTGTTTATATTTACTCAAATCAACATA
TCTCCATAACTCACTATCGTACACAATCCAAAGCCAATGCTTGCAGACCA
ATGCAACGTGACAAAGCTCTGGtaattcaaaactactaaaaatcTTCAAT
AAAACAGTATCTGGTAAATCATCCAAGTTGGCTACAGACTTATTAGAAGC
ATCTCTTGAGGAGCTTTGTAAACCACTGAATTCTTTAGAAAACTTCTTGG
CAAATATGTATCTGATTTCTTTCTCGATCTGGTCTTCAGGTGCATTTGAT
TCCAAGACATTCTCAATGTCCTTGACAACCGTATCAACATCTCTTCCTTC
CGCCATTTCGGATTTTGATTTAGCTGTTATTAGTAATTTATTTcctacat
tttttctgtttatattttgttctctaaa Run BLAST on NCBI protein sequence of TCONS_00017718-protein >TCONS_00017718-protein ID=TCONS_00017718-protein|Name=TCONS_00017718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp
FREQNINRKNVGNKLLITAKSKSEMAEGRDVDTVVKDIENVLESNAPEDQ
IEKEIRYIFAKKFSKEFSGLQSSSRDASNKSVANLDDLPDTVLLKIFSSF
ELPELCHVALVCKHWLWIVYDSELWRYVDLSKYKQINERHIVNLIQARLS
PLLKSLDLSNREITPVIMNELSEHCQQLDTLVLQNCLMQDSQTDEISNLS
TVPEKLVRLDVRNFKQGFYFVHLILEASDMSHLECFGFGNNDFCPAFTEF
HTIFRKMHALRVLECVHCPTIDDNQIKLFANELKCIESLVLTKCNNIIGS
SLPYLIENSKSLKSLNLSETNVSGEWLLQTPWEESVIEELDLSFCLNIDA
DALTGSLPKISTLHHLALHNVGKSKAVTAAVFKAVFERSTWTKLEVLCLR
FCNKFTNDALPYFERCYNLKFLSLRSCFKISYAAIESVLKFLPHLLHLEC
GSLLLSEETICNEWIKVFQSCSQHCRILQKLILVKCSKIPRSKVSEYRTT
FVNFFKSCNHLDTVCVLYSEESIIQLLQQAKAETNVEVTITDSPGLEVIP
RFRHSLDTELNRKRFKTFSV Run BLAST on NCBI transcript from alignment at sc0000273:220665..222742 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017718 ID=TCONS_00017718|Name=TCONS_00017718|organism=Clytia hemisphaerica|type=transcript|length=2078bp|location=Sequence derived from alignment at sc0000273:220665..222742 (Clytia hemisphaerica)
tttagagaacaaaatataaacagaaaaaatgtaggAAATAAATTACTAAT
AACAGCTAAATCAAAATCCGAAATGGCGGAAGGAAGAGATGTTGATACGG
TTGTCAAGGACATTGAGAATGTCTTGGAATCAAATGCACCTGAAGACCAG
ATCGAGAAAGAAATCAGATACATATTTGCCAAGAAGTTTTCTAAAGAATT
CAGTGGTTTACAAAGCTCCTCAAGAGATGCTTCTAATAAGTCTGTAGCCA
ACTTGGATGATTTACCAGATACTGTTTTATTGAAgatttttagtagtttt
gaattaCCAGAGCTTTGTCACGTTGCATTGGTCTGCAAGCATTGGCTTTG
GATTGTGTACGATAGTGAGTTATGGAGATATGTTGATTTGAGTAAATATA
AACAAATTAATGAACGTCACATTGTAAACCTCATTCAAGCCAGATTGTCA
CCTTTACTAAAGTCTCTTGATTTATCCAACCGTGAAATCACTCCTGTTAT
AATGAATGAGTTATCAGAGCATTGCCAGCAACTGGATACTTTGGTGCTCC
AGAATTGCTTAATGCAAGATTCCCAGACTGATGAAATCAGTAATCTGTCA
ACAGTCCCCGAGAAGCTTGTTCGACTCGATGTACGCAATTTCAAACAAGG
TTTTTATTTTGTGCATTTGATTTTAGAAGCAAGTGATATGAGCCACTTAG
AATGCTTTGGTTTTGGCAATAATGATTTTTGTCCAGCTTTTACAGAGTTC
CATACTATTTTTCGTAAAATGCACGCTTTGAGGGTATTAGAATGTGTACA
TTGCCCGACGATTGATGATAATCAGATCAAACTTTTTGCTAATGAGCTGA
AATGTATCGAATCTCTGGTTTTGACCAAATGCAATAATATTATAGGCTCT
TCTCTACCGTATTTAAttgaaaattcgaaaagtttaaaatcgtTGAATCT
CTCTGAAACGAATGTCAGCGGTGAATGGCTTTTACAGACACCTTGGGAAG
AATCGGTTATTGAAGAGTTAGATTTAAGCTTTTGCTTGAATATCGATGCT
GATGCTTTAACAGGAAGTTTACCAAAGATCTCAACATTGCATCATTTAGC
TTTACACAATGTTGGTAAAAGCAAAGCAGTAACTGCAGCtgtttttaaag
ctgtttttgaACGAAGCACGTGGACCAAACTGGAGGTGTTATGTTTGAGA
TTCTGTAACAAATTTACCAATGATGCTCTGCCTTATTTTGAGAGATGCta
caatttgaagtttttatcATTACGAAGTTGTTTCAAAATTAGTTACGCAG
CCATTGAAagtgttttgaagtttttaccACATTTACTACACTTGGAATGT
GGATCTTTGCTGCTTTCTGAAGAAACTATATGTAATGAATGGATTAAAGT
CTTCCAAAGCTGTTCCCAACATTGCCGAATCCTACAAAAACTGATCTTGG
TTAAGTGCTCTAAAATTCCTCGTTCAAAGGTCTCAGAATATCGTACGACT
TTTGTCAACTTCTTCAAATCTTGCAACCATTTGGATACAGTTTGTGTCTT
ATACTCTGAAGAATCTATTATCCAACTGCTCCAGCAAGCCAAAGCTGAAA
CAAATGTTGAAGTTACCATTACTGATTCACCAGGTCTTGAAGTTATACCA
CGATTTAGACATTCTCTTGATACAGAACTAAATCGTAAGCGATTCAAAAC
TTTCAGTGTCTAAATCAGTATCGATGTTTCTTTTTATCTGAGGATTACag
atttacagattttttttcacgctttttttataataagaaaAATCTCTAAG
AGCACAAGGTTCAATTCGAAATAATACGCTAgtttatttttatcattatt
ggttttattatttaaagatattatTGATACGGAAAATGTATTGTTTATTA
TTTAATacgattttaactttttaagatAATCTTTTATATTAGTTAATCCA
AAAGTCTAtgtattttatgaaaatgaatttatttgttaaattttgatatt
ttaacaATGCAATTTTAATCTATTAATTATTAtaatcgaaattcaaattt
ggtgcAGGAATATGTACTTTAGCCAACA Coding sequence (CDS) from alignment at sc0000273:220665..222742 >TCONS_00017718 ID=TCONS_00017718|Name=TCONS_00017718|organism=Clytia hemisphaerica|type=CDS|length=1713bp|location=Sequence derived from alignment at sc0000273:220665..222742 (Clytia hemisphaerica)
tttagagaacaaaatataaacagaaaaaatgtaggAAATAAATTACTAAT
AACAGCTAAATCAAAATCCGAAATGGCGGAAGGAAGAGATGTTGATACGG
TTGTCAAGGACATTGAGAATGTCTTGGAATCAAATGCACCTGAAGACCAG
ATCGAGAAAGAAATCAGATACATATTTGCCAAGAAGTTTTCTAAAGAATT
CAGTGGTTTACAAAGCTCCTCAAGAGATGCTTCTAATAAGTCTGTAGCCA
ACTTGGATGATTTACCAGATACTGTTTTATTGAAgatttttagtagtttt
gaattaCCAGAGCTTTGTCACGTTGCATTGGTCTGCAAGCATTGGCTTTG
GATTGTGTACGATAGTGAGTTATGGAGATATGTTGATTTGAGTAAATATA
AACAAATTAATGAACGTCACATTGTAAACCTCATTCAAGCCAGATTGTCA
CCTTTACTAAAGTCTCTTGATTTATCCAACCGTGAAATCACTCCTGTTAT
AATGAATGAGTTATCAGAGCATTGCCAGCAACTGGATACTTTGGTGCTCC
AGAATTGCTTAATGCAAGATTCCCAGACTGATGAAATCAGTAATCTGTCA
ACAGTCCCCGAGAAGCTTGTTCGACTCGATGTACGCAATTTCAAACAAGG
TTTTTATTTTGTGCATTTGATTTTAGAAGCAAGTGATATGAGCCACTTAG
AATGCTTTGGTTTTGGCAATAATGATTTTTGTCCAGCTTTTACAGAGTTC
CATACTATTTTTCGTAAAATGCACGCTTTGAGGGTATTAGAATGTGTACA
TTGCCCGACGATTGATGATAATCAGATCAAACTTTTTGCTAATGAGCTGA
AATGTATCGAATCTCTGGTTTTGACCAAATGCAATAATATTATAGGCTCT
TCTCTACCGTATTTAAttgaaaattcgaaaagtttaaaatcgtTGAATCT
CTCTGAAACGAATGTCAGCGGTGAATGGCTTTTACAGACACCTTGGGAAG
AATCGGTTATTGAAGAGTTAGATTTAAGCTTTTGCTTGAATATCGATGCT
GATGCTTTAACAGGAAGTTTACCAAAGATCTCAACATTGCATCATTTAGC
TTTACACAATGTTGGTAAAAGCAAAGCAGTAACTGCAGCtgtttttaaag
ctgtttttgaACGAAGCACGTGGACCAAACTGGAGGTGTTATGTTTGAGA
TTCTGTAACAAATTTACCAATGATGCTCTGCCTTATTTTGAGAGATGCta
caatttgaagtttttatcATTACGAAGTTGTTTCAAAATTAGTTACGCAG
CCATTGAAagtgttttgaagtttttaccACATTTACTACACTTGGAATGT
GGATCTTTGCTGCTTTCTGAAGAAACTATATGTAATGAATGGATTAAAGT
CTTCCAAAGCTGTTCCCAACATTGCCGAATCCTACAAAAACTGATCTTGG
TTAAGTGCTCTAAAATTCCTCGTTCAAAGGTCTCAGAATATCGTACGACT
TTTGTCAACTTCTTCAAATCTTGCAACCATTTGGATACAGTTTGTGTCTT
ATACTCTGAAGAATCTATTATCCAACTGCTCCAGCAAGCCAAAGCTGAAA
CAAATGTTGAAGTTACCATTACTGATTCACCAGGTCTTGAAGTTATACCA
CGATTTAGACATTCTCTTGATACAGAACTAAATCGTAAGCGATTCAAAAC
TTTCAGTGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017718-exon-sc0000273-1491911889:220665..222742 | TCONS_00017718-exon-sc0000273-1491911889:220665..222742 | Clytia hemisphaerica | exon |
| TCONS_00017718-exon-sc0000273-1510915933:220665..222742 | TCONS_00017718-exon-sc0000273-1510915933:220665..222742 | Clytia hemisphaerica | exon |
| TCONS_00017718-exon-sc0000273-1575043694:220665..222742 | TCONS_00017718-exon-sc0000273-1575043694:220665..222742 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:220665..222742 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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