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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017700 ID=TCONS_00017700|Name=TCONS_00017700|organism=Clytia hemisphaerica|type=transcript|length=2393bp
tagattagactttttctttttttttctttcttttcttttgttttatgttt
tcgaatgtaattaacgaccttatttgatttgagacattcgaattcttttc
aaaccaaaagaaatcttttaaacagaatctgttaaagaaaagaacaaata
taaaataaaacactaGAATCACAAGACaggtttgttagaacaacagcaac
actaaaaatacattcaaaaggcgtaaaaactagaattctttcttcgtaaa
aagggacctttaaacatgtatgtcgataattattttgctataaatctaag
tcattgttgaatttgaaaaattattgaagttatgacgaagttattttata
aaaagcaacataaaattgcgctatcacgcttttttgtctgcgttgtccta
gctgccttccgggggggaccatggttgcgagctgactttcggccctgccc
ctcggacccttagcagaataaagaggagaagaaacaagggaaattgtgtg
aattctaattcaatttttggaactaatttgaccaaatttctatctttctg
ggggcaaaaagttgaaattttcctatttttccaattcttagtgggactga
aatttgattttccgatttttcaaactgccatgtttcaaaaaaagcaccct
taaggccggcacatacccatacccttctcccttcgcctaagtaccccctc
ccccgggctgccttttttcgacgaatcgcgtgtcatgtctattatttcac
tccgcttatcttgacatcaaagatTTCCTAAACATAAAGAACTAaggcaa
atataacgcgagcgaagcgagaaaaaaaatctaattgcagagtcgtctcg
gacgtcgctggtcgctggtatggtgtaattttggaatgacgccctttcag
CTAAACCGgtgtgcgacgccgggtaccggctagttagcATTTATTTTTCC
ATCTCTTAATATTACATTACTTTACCATTCCAAAACAGACAAAGCAACTT
TACCTAGAGGGCCTAGAgtacttcttttttcttttagccAATTTTATAAC
AATTTCGTTCCTCTTTCTTTTAGCAGACTTCTTATCTGAACCATATGTAA
CCAAGCACCGGCCCCCACATTCAAAGTCCTCCATTTTTCTTTTCCGTTTT
CTCCTCACCTTTAAAGCCTTATCATCATGACATCGAGTTCCTCATATTTT
TCAATATCATCGTCGCTATCGCCGACATTACTGAATAGCCTTTCATCCTC
TAACAAACAAATTGTGCAAAAATGCATGCTACCATCGCGAGCTTACAAAT
TTCTTCCGGATCGTTGAGCTGAATTTTTTCTGTCATTCGCCGGACTCATC
CCTGTCAATGACATTACGAGTGGATGCATGAACGAAGTTGAAATTAGATT
CAGATGAACGAGCACCAAGTTCGAGTCCTTTAAAGGAGGTTATCAAGAAT
GTTTCCAGGCCAAAATAAGCAGCGTCATCTCATCTCTCGGTAACATCTCA
ATGGGTTTATTCACGATGTTATTATAACGAGGactgtttacaaaaatttt
aacaTCATGGACTGCCCCTGGAAACCCAATAAAGCAGTGTGTGAACTTCA
ATTTGTGGTCACAAACAGCCTGGAGAACAATAGACGGAAAGTCCTTTCTA
TTAATATAACTTCTAAGTGTCCTCCCCTTGGCCCATTATGGGAATATGGC
TCCCATCAATTGCGCCAATAACATTTTCCATTCCTCTGAATGCTTGAAAA
CCCCTCAAAACTTCTTCGGCTTCTCTGCCCGTCGGCCATTTTATAAAATT
GTCCATCAATCAGTCGAGTATTGCCTTCATTACTCGTCTGATCAGGCCAT
GGAGTCGTTGACATTTGAATGTAGCATTCAGTGGTAGCTATATATACCAA
AGGAAAACACATATCGTCGCTGTAAAATAAGAGTGCCTTATGtccatttt
tgacattttgaggaAGTAGCATTTTAAGTATTCTCATGTTTGTTCAATAC
AATACAActatttaaagaaaataatgcaAATACTAACATTAATTTGAATA
ATGTCAAAGAATCATTTTACAATATATATATTGCAGtaaaattaacaata
aaatctttaaaaaagtacAACTAAGAGCTGAAAAAATCTAGTAAGAACAA
AAAATAAACTCAAAAATGTGATAGCCTAAAAATAATATGATCTAAGCAAT
AATACTATAAATTATTAAAAGAAAGACAGTTTTACCTGAAGTGTAAACAA
ACTAAATTGtgaatttaaaaatcttaacagtttttaaggaaaaataaaag
GTGTTAGTTCGGCCTCCTGGCTTAAAAAAGGGCATACAGCAGTAGTCTGG
TAAGGGTATTTTGTGTTAACAAACAAGTTCTACACAAAATTAT Run BLAST on NCBI transcript from alignment at sc0000273:21093..23485 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017700 ID=TCONS_00017700|Name=TCONS_00017700|organism=Clytia hemisphaerica|type=transcript|length=2393bp|location=Sequence derived from alignment at sc0000273:21093..23485 (Clytia hemisphaerica)
ATAATTTTGTGTAGAACTTGTTTGTTAACACAAAATACCCTTACCAGACT
ACTGCTGTATGCCCTTTTTTAAGCCAGGAGGCCGAACTAACACcttttat
ttttccttaaaaactgttaagatttttaaattcaCAATTTAGTTTGTTTA
CACTTCAGGTAAAACTGTCTTTCTTTTAATAATTTATAGTATTATTGCTT
AGATCATATTATTTTTAGGCTATCACATTTTTGAGTTTATTTTTTGTTCT
TACTAGATTTTTTCAGCTCTTAGTTgtacttttttaaagattttattgtt
aattttaCTGCAATATATATATTGTAAAATGATTCTTTGACATTATTCAA
ATTAATGTTAGTATTtgcattattttctttaaatagTTGTATTGTATTGA
ACAAACATGAGAATACTTAAAATGCTACTtcctcaaaatgtcaaaaatgg
aCATAAGGCACTCTTATTTTACAGCGACGATATGTGTTTTCCTTTGGTAT
ATATAGCTACCACTGAATGCTACATTCAAATGTCAACGACTCCATGGCCT
GATCAGACGAGTAATGAAGGCAATACTCGACTGATTGATGGACAATTTTA
TAAAATGGCCGACGGGCAGAGAAGCCGAAGAAGTTTTGAGGGGTTTTCAA
GCATTCAGAGGAATGGAAAATGTTATTGGCGCAATTGATGGGAGCCATAT
TCCCATAATGGGCCAAGGGGAGGACACTTAGAAGTTATATTAATAGAAAG
GACTTTCCGTCTATTGTTCTCCAGGCTGTTTGTGACCACAAATTGAAGTT
CACACACTGCTTTATTGGGTTTCCAGGGGCAGTCCATGAtgttaaaattt
ttgtaaacagtCCTCGTTATAATAACATCGTGAATAAACCCATTGAGATG
TTACCGAGAGATGAGATGACGCTGCTTATTTTGGCCTGGAAACATTCTTG
ATAACCTCCTTTAAAGGACTCGAACTTGGTGCTCGTTCATCTGAATCTAA
TTTCAACTTCGTTCATGCATCCACTCGTAATGTCATTGACAGGGATGAGT
CCGGCGAATGACAGAAAAAATTCAGCTCAACGATCCGGAAGAAATTTGTA
AGCTCGCGATGGTAGCATGCATTTTTGCACAATTTGTTTGTTAGAGGATG
AAAGGCTATTCAGTAATGTCGGCGATAGCGACGATGATATTGAAAAATAT
GAGGAACTCGATGTCATGATGATAAGGCTTTAAAGGTGAGGAGAAAACGG
AAAAGAAAAATGGAGGACTTTGAATGTGGGGGCCGGTGCTTGGTTACATA
TGGTTCAGATAAGAAGTCTGCTAAAAGAAAGAGGAACGAAATTGTTATAA
AATTggctaaaagaaaaaagaagtacTCTAGGCCCTCTAGGTAAAGTTGC
TTTGTCTGTTTTGGAATGGTAAAGTAATGTAATATTAAGAGATGGAAAAA
TAAATgctaactagccggtacccggcgtcgcacacCGGTTTAGctgaaag
ggcgtcattccaaaattacaccataccagcgaccagcgacgtccgagacg
actctgcaattagattttttttctcgcttcgctcgcgttatatttgcctT
AGTTCTTTATGTTTAGGAAatctttgatgtcaagataagcggagtgaaat
aatagacatgacacgcgattcgtcgaaaaaaggcagcccgggggaggggg
tacttaggcgaagggagaagggtatgggtatgtgccggccttaagggtgc
tttttttgaaacatggcagtttgaaaaatcggaaaatcaaatttcagtcc
cactaagaattggaaaaataggaaaatttcaactttttgcccccagaaag
atagaaatttggtcaaattagttccaaaaattgaattagaattcacacaa
tttcccttgtttcttctcctctttattctgctaagggtccgaggggcagg
gccgaaagtcagctcgcaaccatggtcccccccggaaggcagctaggaca
acgcagacaaaaaagcgtgatagcgcaattttatgttgctttttataaaa
taacttcgtcataacttcaataatttttcaaattcaacaatgacttagat
ttatagcaaaataattatcgacatacatgtttaaaggtccctttttacga
agaaagaattctagtttttacgccttttgaatgtatttttagtgttgctg
ttgttctaacaaacctGTCTTGTGATTCtagtgttttattttatatttgt
tcttttctttaacagattctgtttaaaagatttcttttggtttgaaaaga
attcgaatgtctcaaatcaaataaggtcgttaattacattcgaaaacata
aaacaaaagaaaagaaagaaaaaaaaagaaaaagtctaatcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017700-exon-sc0000273-1491911889:21093..23485 | TCONS_00017700-exon-sc0000273-1491911889:21093..23485 | Clytia hemisphaerica | exon |
| TCONS_00017700-exon-sc0000273-1510915933:21093..23485 | TCONS_00017700-exon-sc0000273-1510915933:21093..23485 | Clytia hemisphaerica | exon |
| TCONS_00017700-exon-sc0000273-1575043694:21093..23485 | TCONS_00017700-exon-sc0000273-1575043694:21093..23485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:21093..23485 . |
Blast
The following BLAST results are available for this feature:
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