TCONS_00017699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017699
Unique NameTCONS_00017699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017699 ID=TCONS_00017699|Name=TCONS_00017699|organism=Clytia hemisphaerica|type=transcript|length=231bp
gtcaCACTTTTTTCATTTATCTGAAATTTAAGAAGCAAACTAATAGaata
atctttgaaaaaacatatTCGTGAAATTGAAGGGACAAAATATCCACCTG
TTTTTTGCCTATTGTCTCAGATATCAGGCTATATTAGTCGAAAGTAAACA
TCGTTCTAAACCCCCATAACGTGGTTTCTTTGCCTTATATGGTAAAGTTG
ATTACCTAAACGTTCTTAAGGTCAAATTANN
Run BLAST on NCBI

transcript from alignment at sc0000273:7430..7660

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017699 ID=TCONS_00017699|Name=TCONS_00017699|organism=Clytia hemisphaerica|type=transcript|length=231bp|location=Sequence derived from alignment at sc0000273:7430..7660 (Clytia hemisphaerica)
NNTAATTTGACCTTAAGAACGTTTAGGTAATCAACTTTACCATATAAGGC
AAAGAAACCACGTTATGGGGGTTTAGAACGATGTTTACTTTCGACTAATA
TAGCCTGATATCTGAGACAATAGGCAAAAAACAGGTGGATATTTTGTCCC
TTCAATTTCACGAatatgttttttcaaagattattCTATTAGTTTGCTTC
TTAAATTTCAGATAAATGAAAAAAGTGtgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009899XLOC_009899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017699-exon-sc0000273-1491911889:7430..7660TCONS_00017699-exon-sc0000273-1491911889:7430..7660Clytia hemisphaericaexon
TCONS_00017699-exon-sc0000273-1510915933:7430..7660TCONS_00017699-exon-sc0000273-1510915933:7430..7660Clytia hemisphaericaexon
TCONS_00017699-exon-sc0000273-1575043694:7430..7660TCONS_00017699-exon-sc0000273-1575043694:7430..7660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:7430..7660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.17696	0.476592	0	0	1.33643	2.50229	0.875956	0	0	0.692293	0.826591	0	1.02997	0	0.780339	0	3.10008	1.1563	0	0	0	0	0	0	3.47262	0	0.417408	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top