TCONS_00017692 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017692
Unique Name	TCONS_00017692
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1711

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000273:133669..138866-

transcript sequence

>TCONS_00017692 ID=TCONS_00017692|Name=TCONS_00017692|organism=Clytia hemisphaerica|type=transcript|length=1711bp
TAGAGACCTCATTTATTGAAAGAgaattgaaaaatagaaaatttgaagtt
aAAGAAGAATGAACAAAgacgaagaagaagatgaagaggATTACATGTCT
GACAAATATCTCCTCAATGAAAGCAAACCTGGACTCATGCCCAAACTCTT
TCTTGATCGCCACAAACGAGGTGAATCATCCTCTTCCAAGAAGAAAAACA
CCCCAAAACCAAAACAAGACAAGCACCAGTCTGTTAAAGTCAAAGAACAT
GAGAATCGAAAAGAGAAACTTGATCAAGCTTTGGATGAATCAAATAAAGG
ATTTGCAATGCTTGCCAGAATGGGATTCAAAAAAGGAATGGGTCTTGGAA
AGGAAGGTCAAGGACGGTCCGAACCAATTCCTATTGACATCAAGACTGGT
CGTGGAGGTGTTGGTAAAACATCAGAGGAAGAACGAAAGCGAACGAAGCG
TCTTGAAATGTACCGTATCAAAGCCAAAAGGCGtaaagaagatgaagaaa
atttgaaaggtGATTTCAAGTCAAGAATGAGAAGCAAAATCAACGAACGA
CAGGTTTTCGCTGACCTGTGCAAAAGCCAGAAAGCATGTCATCAATTAGA
CCAGAAAAAGGGAATGGAAGAGCCGATTCAGTCATGGTATTGGACGAAGC
AACCTCTACAAGATGATGAAGAACAAGAAGTAGAAGAAGTTCAAGATGAA
GTCGAAGAAGATGATAACGAGAAACTGGTCATTTTGACATGCTACTTGCG
AACTGAACATCGCTATTGTATTTGGTGTGGTATAACCTTCAATGACGAGA
ATGATTTGAAGGAAAATTGTCCGGGAGACACGTTCGAAGATCATCAAGAT
TGAGAAGTTGTGGGTGAAAAATCTCTCTTGGTGTGGTATGCCTTTTTTTG
ATATGCCACACTTCCACAAATGTGGAGTTTGCTGTAGCTCACGGCAAATA
CTTAAAGGGCACTGACAGAAAACTGCATAAAATATAGTTTACTGTTGATC
CCGCTCTTGAGGGTTATGTTTTAGTGATATCGTTTTTATGgttatttggt
tgttttttggaaagtttttttattgaaaacgatttaaaatgagatgaaat
CATGTGAAGTCTTTTTTCGGAAAGTACAACCTACAAGATGAAATGAAGCA
TTTTGACCCAGGAGACATAAATTGATTTAATGGAAACTTTTATCCAATCG
GTTGGCTGATTTCATGGACTTTGTTATACAAATGACTGGACGGTCTTTGT
GCTTGATATAAACGGGAAATATATGCAAGCAAGACAAAAGTAAATAATCA
TGGTAAAGAGACTAATTTTGATAAAGACAAAATATTCGATTACGTgatta
caaaattttgacccttATTGCTTTTTGTTCACATTATAACGCGAAAACAT
CAGGCTTTACATCTCTGAAATAAATGGACAGCTCAACGAACTCATCCAAG
TAACTGTTTTATTTATACCAATAAGGTGATAAacaacaaaagttaaaaat
attaaagGGAGCTGTTTTAAAGTTGATTTGAGATTTTATTTGTGTCTCTC
CCCCAACAGTTTCTTAAGTCCGAGCATGAAAACATTTAGTTTTATCATGT
TTTATGCAAGGAAGTAAGAAATTCAATACTACTAAATGTAAACATAGCGT
TTTGCAACATTATTGATTGCCCAAATATAATGTTATTCAAGACGTTAAAA
ATAACGTCCCA

Run BLAST on NCBI

transcript from alignment at sc0000273:133669..138866-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017692 ID=TCONS_00017692|Name=TCONS_00017692|organism=Clytia hemisphaerica|type=transcript|length=5198bp|location=Sequence derived from alignment at sc0000273:133669..138866- (Clytia hemisphaerica)
TAGAGACCTCATTTATTGAAAGAGAATTGAAAAATAGAAAATTTGAAGTT
AAAGAAGAATGAACAAAGACGAAGAAGAAGATGAAGAGGATTACATGTCT
GACAAATATCTCCTCAATGAAAGCAAACCTGGACTCATGCCCAAACTCTT
TCTTGATCGCCACAAACGAGGTGAATCATCCTCTTCCAAGAAGAAAAACA
CCCCAAAACCAAAACAAGACAAGCACCAGTCTGTTAAAGTCAAAGAACAT
GAGAATCGAAAAGAGAAACTTGATCAAGCTTTGGATGAATCAAATAAAGG
ATTTGCAATGCTTGCCAGAATGGGATTCAAAAAAGGAATGGGTCTTGGAA
AGGAAGGTTTGACGAGCTATTAAAGTCTGTCGAAATATAATTGGCAGTGG
CAATAAGAATGCCTGTAACTTTTGATAGTCAAATATAATTATGGAATTTT
TTTTGCTTGTTTCATAGAAACAAAAGCGCTATATTTCCATGTATTTTTGG
TTGAAAAATTCGCGATTTTTAGCGGTTAAATTTGCGATTGTAAAAATTAA
GCTTTTCTTCTACTTATGCTATAACGTTCATTTTACACCAGTGGTAGTTC
AACCTTAGGTTAAAAAGTTTGTTAAATTTCAAAGCGAACAAAAAACTCCT
TCGGAAGATATGGGACCCGAAATACTCCTTGGTAGCACTGCGAAATATCA
AATCTCCAACTTATTACTAAAAACGGGCGTTATGTTATTTTTTTTTGAAA
AGTGCAATTAAAAGTTCGAAAGTGTTAAGTGTTGCTGCATGGAGGTAATA
AAAATATAGATGGAGAGAAAACGTCTCGGTAATGATCTAAATGGTCGTTG
AAATCTTTTATAAATCTATTCAAAGCGGCTTTTCTCTGATTTACCATCAT
TGGAAGCAAAAAACATCAATTTATAATTTTATAAGAACAGAAAGAAACTG
TTTGGTTGATTTTGAAAAACTTAATTTTGTCGAAAATCCTTGTTAAAATG
CGATTCGAAATAGTTTCAACTGATGTAAGACTAAAAGAGTATGTTAATTT
CATAAGGACACATTTTTGGGCTGGCATTTTGTTAACATTGAGAGTTGCAT
CACATTATCATTGAAAGTTTCTTATCTTAAAATCTTCACGTCTAAGTGGG
CAACGGTTTTCATACTCTGACAAAATGATCGATACAAGGTACCTAATAGT
AACACGTATTTCTTTTTTAAATCTATTGATGGCTTTATGGGCAGTTTCCC
CTAGAAGTTTGGAGTATTGTGCTTATTATGTGAAGTTTTTTTCAATTTTT
CATGACAAGGCTATTATATTTCAATATACTTGTTAAAAATGTAATGTCTT
TTCATTCATCTTAAATATTCCCACGAGTATACCCAAAATTAGTCATCTTA
TTCCCAAAGCTATTAAAAGTTACAGGCATTCTTGTTTCCACTGCCAATTA
TATCCGGACAGACTTTAGTTATCCTGCATTTTTTAAAATGAAGATGAACT
TTCCTCAAGTCTGTGATTTTTTTTTATTGTCCAATGAGTCTATCCAAATG
AAATTGTTTTTTACGACCATTTTGCTTCGTTTACTAGTGAGTCAATATAA
GTTGAGCTTAAGTATTACTGTTAAATAAGCTTTTTTCATTTCTGTTTAGG
TCAAGGACGGTCCGAACCAATTCCTATTGACATCAAGACTGGTATGTAAT
TCAAATTCATTCGACTTTCCATCATGAGAAATGGAGTTCTATTCGACACT
ATACACCAAAGCTATTCTACTTGTGATAGGCCAAAATAATGCTTCTCAAT
ACTTGAAACACCTCATTAAATTTATGCAGGGATTTTTCTAAGCACTGAGC
TGGGGCCGTTTTTGTAAATTTAGATTGAGTTTCTAATGCCTGAAAAATTG
GCATCATTGATGAAGCTGGGGGTCTGAGGGCGCTTTGAAGCCCCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGTAGTGGGTTCAGAGGG
CTAAGCTCTCAAAAAATGAATATGTAGATTGTATTAGTTATTTTTGCGTG
TAAATTCAAGAACTCAATCTTCGACTGTGAGTATTTTGGCCGGTATACGG
ACATAAAAATGTGCTTAGAAAATCCCTGTTAGCATATCCTTGACGTATTG
TTTTCAAAGGAAACAACTTTGATTTTGCTAGTGGCGAATCTAGTTAAGAG
AAAAATTGTTTAAAATTTGCTACTCCTGGAAAGAACCGGTGTGTTTCTAT
AGAAAACATTACGTCATTGATATCTACCATTCTAGGTCGTGGAGGTGTTG
GTAAAACATCAGAGGAAGAACGAAAGCGAACGAAGCGTCTTGAAATGTAC
CGTATCAAAGCCAAAAGGCGTAAAGAAGATGAAGAAAATTTGAAAGGTGA
TTTCAAGTCAAGAATGAGAAGCAAAATCAACGAACGACAGGTTTTCGCTG
ACCTGTGCAAAAGCCAGAAAGCATGTCATCAATTAGACCAGAAAAAGGTA
ATGCTATGGATTATAGGTCAACCAAAGTTCTTATTCTCAACCTCAGTTGA
GCTAGAATCTGGACATGTCCATCTGTCACAAAAACTTTAGGACAGCTTGG
TAATTTCAAAAATTGTCAAATTTTACTTTAAGTTTGGTGCACACACTTGA
TCTGACGCAAATATAGTACAACTTTTACAATGGATTCTTCGAATAATTTG
GAGCTTTAGAACTTGAGTGCGTTGTTCCTGGTTGTTCGAGTGTACTCTCG
GGTACCTAATAGCCGGGGGGTTTGGAATAAGCAGGGGGGTTGGAAAAAAT
CTCAAAATTTAATAAGCGGGGGGGGGGGTTGGAATAAAAATGTCCTGGGT
GGAAAATGTTCGAAAAGGAGGCTGATACAGCAGAATTAGGGCAAAAGAGG
TAACTTTCAAAAACAATTTTCCCAAAAATCAATAAGCGGGGAGGGGGGGT
GGAATAAGGATGTCCTGAGTGGAAAATTTTCGAAAAATTAATTAGCGGGC
CCCCCCGGCTATTAGGTACCCGGGGGAAGTTGATATCTCTATTTATCTGT
TGTAAAACATTACTTCCTTTGTAATTTATTAAGAGCACTGTAGATTATCC
AGTTCTTCATGTACATCTATAGGGAATGGAAGAGCCGATTCAGTCATGGT
ATTGGACGAAGCAACCTCTACAAGATGATGAAGAACAAGAAGTAGAAGAA
GTTCAAGATGAAGTCGAAGAAGATGTGAGTGCAACCAAATTCTTCCAAAA
GCATTTATCATTTCTTTCATTAAAATTTTCAAAGGTTGCCAATGACTCTC
CAGTATGATGCAGATGGCCTGTTCAAGAAAGGTGTATACACGTTTTTTAA
AGAACATCCACAATTTTTGAAGCCTACGGGTGCTACTAGAACTTTTTGAG
TTTCAAGCCTTAAAATGTTCACAACCTGTTCTTATTTTCACCTTTCGCGA
TTATTTTTGTGCATTTTCCTAAGAAATTGGGTGTTTTAGAGTCAGGAAAG
CCTTCTTAAAATTTTCTTGATTTGTTCTTAATATTTTGGTCTTCGAACTC
TTATGTTCTTATATAGTTTATTGTTCTTGTAAGATGTCTTTGCCAGTTCT
TTCTTAGGATAACGAGAAACTGGTCATTTTGACATGCTACTTGCGAACTG
AACATCGCTATTGTATTTGGTGTGGTATAACCTTCAATGGTAAGTGAGGT
GCCATGTTTCATTTACTCATCCATTTGAGAAATTCGACAAAAATTGGCCT
AAATTTTAAAAGTTTTATGTCAAAATTTAATTTCAACTGCCCGCCTCNTT
TTTTTTTGAATTTTTACTTCGACAACAAGTGGCCTAAATTTTAAAAGTTT
TATGTCAAAATTTAATTTCAACTGCCCGCCTCTTTCTTATAAAATTAAGT
ATATTTTTAGTCTCGACCGCGGCCGAGCAATGATGATAATGTAGATGATA
AAAGTAACGCAATCAATACTCAGCGATCAATACTCAGCAGTTTCTTTTAG
TCACTCGGCAGTATTAAGCCGCGATGGTGCGTTTATGGTAAATTAAGTCG
ACGTAGGTCATCTTTAGTTAGCAGAGGTGACTCGTTGATAATAGTATTGT
GTACGTAATATTCTCCTTCTCTTTAGACGAGAATGATTTAAAGGAAAATT
GTCCNAGTAACAATATTCTCCTTCTCTTTAGACGAGAATGATTTGAAGGA
AAATTGTCCGGGAGACACGTTCGAAGATCATCAAGATTGAGAAGTTGTGG
GTGAAAAATCTCTCTTGGTGTGGTATGCCTTTTTTTGATATGCCACACTT
CCACAAATGTGGAGTTTGCTGTAGCTCACGGCAAATACTTAAAGGGCACT
GACAGAAAACTGCATAAAATATAGTTTACTGTTGATCCCGCTCTTGAGGG
TTATGTTTTAGTGATATCGTTTTTATGGTTATTTGGTTGTTTTTTGGAAA
GTTTTTTTATTGAAAACGATTTAAAATGAGATGAAATCATGTGAAGTCTT
TTTTCGGAAAGTACAACCTACAAGATGAAATGAAGCATTTTGACCCAGGA
GACATAAATTGATTTAATGGAAACTTTTATCCAATCGGTTGGCTGATTTC
ATGGACTTTGTTATACAAATGACTGGACGGTCTTTGTGCTTGATATAAAC
GGGAAATATATGCAAGCAAGACAAAAGTAAATAATCATGGTAAAGAGACT
AATTTTGATAAAGACAAAATATTCGATTACGTGATTACAAAATTTTGACC
CTTATTGCTTTTTGTTCACATTATAACGCGAAAACATCAGGCTTTACATC
TCTGAAATAAATGGACAGCTCAACGAACTCATCCAAGTAACTGTTTTATT
TATACCAATAAGGTGATAAACAACAAAAGTTAAAAATATTAAAGGGAGCT
GTTTTAAAGTTGATTTGAGATTTTATTTGTGTCTCTCCCCCAACAGTTTC
TTAAGTCCGAGCATGAAAACATTTAGTTTTATCATGTTTTATGCAAGGAA
GTAAGAAATTCAATACTACTAAATGTAAACATAGCGTTTTGCAACATTAT
TGATTGCCCAAATATAATGTTATTCAAGACGTTAAAAATAACGTCCCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009894	XLOC_009894	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000273	supercontig	sc0000273:133669..138866 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.1562	35.1793	64.6751	69.3377	6.61325	5.09803	15.5889	15.4902	6.00398	6.03356	4.83081	4.99513	2.34022	1.86618	3.95522	5.03551	8.92106	5.97561	1.68613	1.3141	7.06523	7.09747	14.7575	11.9403	3.18497	5.17144	7.69052	4.61002	7.04217	7.57351

Blast

[Close]

BLAST of TCONS_00017692 vs. Swiss-Prot (Human)
Match: GPT11 (G patch domain-containing protein 11 OS=Homo sapiens GN=GPATCH11 PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.082e-48
Identity = 102/257 (39.69%), Postives = 155/257 (60.31%), Query Frame = 2

Query:   92 YMSDKYL--LNESKPGLMPKLFLDRHKRGEXXXXXXXNTPKPKQDKHQSVKVKEHENRKEKLDQALDESNKGFAMLARMGFKKGMGLGKEGQGRSEPIPIDIKTGRGGVGKTSEEERKRTKRLEMYRIKAKRRKEDEENLKGDFKSRMRSKINERQVFADLCKSQKACHQLDQKKGMEEPIQSWYWTKQPLXXXXXXXXXXXXXXXXXXXN----EKLVILTCYLRTEHRYCIWCGITFNDENDLKENCPGDTFEDH 844
            YMSD ++    + +PGL P L   R  R +    ++ N     +++ +S+K +E E R   L  AL   NKGFA+L +MG+K G  LGK G G  EPIP++IKTG+ G+G  +  +RK  ++LE YR K   + + EE     F+ R+++K +E ++  DL +SQ+AC QLD +K ++ P ++WYW +   + +E++E +E  ++  + ++    EKL ILT YLR EH YCIWCG  + D+ DL  NCPG T  DH
Sbjct:    7 YMSDSFINVQEDIRPGL-PMLRQIREARRKEEKQQEANL----KNRQKSLKEEEQERRDIGLKNALGCENKGFALLQKMGYKSGQALGKSGGGIVEPIPLNIKTGKSGIGHEASLKRKAEEKLESYRKKIHMKNQAEEKAAEQFRMRLKNKQDEMKLEGDLRRSQRACQQLDVQKNIQVPREAWYWLRLEEETEEDEEEKEQDEDEYKSEDLSVLEKLQILTSYLREEHLYCIWCGTAYEDKEDLSSNCPGPTSADH 258

The following BLAST results are available for this feature:

BLAST of TCONS_00017692 vs. Swiss-Prot (Human)

BLAST of TCONS_00017692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GPT11	1.082e-48	39.69	G patch domain-containing protein 11 OS=Homo sapie...	[more]

You are here

TCONS_00017692 (transcript) - C. hemisphaerica