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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017688 ID=TCONS_00017688|Name=TCONS_00017688|organism=Clytia hemisphaerica|type=transcript|length=1802bp
ATTCTACACGATTTATTTGATGTTCAGATTGATGTCTTTCTTCTAAACTA
AAcagtatacgtttttttataagaacaaactatatagaaACATAACGCTT
CTATGGCCAATATTATAAACAAGctgagaacattttcaggctttatggac
tctacAGTGCCAAATTtattaggaaattgcacaaaaattctaaaaaaatg
atgaaattaggcacattttaagaacatttttaggcttggaACTCAAAAGA
TTAAGATCTGAAGGCTTAAAAATAGGATATTCTTGTAAAAATCGTGTAGT
CGTAATAGCCTCAAGCAGAAAAGCATAAATCGACAGACAGTCAAGCTCCA
ACATCTCCCTTTTTCGTGTTTAATTTACATGAACAACAGTAGTTTTTTGA
GAGAGCGGGATTGTTTATCTTGTCAGCAGTTACACCCTTTTATAGTAAAC
ATTGTCtcgtaaaacttttttctttctattttttttttaacttataATGT
TTTATGAAGTTCAAATTTTAGTTGCTTGACACCCTGACAAGAGGAAGACC
AACCAACTCACaacttttcacttcaccttTTTACGtggttttttttaact
tcaaTTTTACAAACATGCCAGATTCAGGAATCGACATCCCACAAGAAGTG
GTTGCTGCTTTGAGTGTTATGGAACAAATCGCCAAGAACAGCAAAGATTT
TGTGGTCATTGACATGAATCAACGCAAAGTAAAAGgaaaacaACTTATTT
TTGACATTACCGTTGGCACACAGCAGGAGGCTGGAAAAGCAGAGGAAGCT
TACGAAGGAAAGGATTTGGGAAGTGTAGATTGTGTTTTCCAATCTGTCAA
AGATATGTTGGTGAAAGATTACAAGGACGATGGATGTTTCGTCCAGTTCT
ATTTAAACTATCTTTTGGAAGGAAAccgtgagcaaaacaaactcaTGTTC
CTGACCTGGTGTCCAGACAGTACGAACATTAAGAAGAAAATGACCATGTC
TTCCACAAGTCAAAATTTGATCAAGAAAGCGCCCAAAGGAGCTATTGGAC
ACACTGTTAACGATATCCAAGATTTGAATTACAAAGATTTCTGCACCGTT
GCAAGTGCTGGTAAATGTAAATAAACCTTCTCTGTTGCGCATTTCCCGGA
CATTCCTCACGACTACCAAATACCGGACAGTCGAGAATTTGGTGTCTTAT
agtattatttttcttattaggGTATGACGTTAGTTTAGGAATTCTTTTTA
CTAGTTTTCTAGCCTTCGCTCTCGAATTTGAAAAATAGGACATTCTTCAA
TCTTGAATGTGATACCCGAAAGAAAATcatagtttcaaaaaaaaagtatg
tTCATATTTCTATACAGTCGATATTTGCTGGTCATGAAGGAAATCTTTTG
TATTATAgctatatgttttttttttacgaaTTAATATATTTATGTTGTTT
TCTTATttggaaataaataaattgcttacaaagaaatttatttcttgTAA
TGGTCTGTTtaagtttttggacctaccccggtggggtagaggtcctataa
attaaccgatgtccgtccgtccgtccgtccgttcgttcgtccgtccgtct
gttacNATTTTGCAAGATGGACTTTTTGATCAGATTGAAGAACAAAtgca
ttttcagttttttggacctaccccggtggggtagaggtcctataaattaa
ccgatgtccgtccgtccgtccgtccgtccgttcgttcgtccgtccgtctg
ttaccagcttttctcaggattggctcattagttttttctgatttttggca
NN Run BLAST on NCBI transcript from alignment at sc0000273:127320..132089- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017688 ID=TCONS_00017688|Name=TCONS_00017688|organism=Clytia hemisphaerica|type=transcript|length=4770bp|location=Sequence derived from alignment at sc0000273:127320..132089- (Clytia hemisphaerica)
ATTCTACACGATTTATTTGATGTTCAGATTGATGTCTTTCTTCTAAACTA
AACAGTATACGTTTTTTTATAAGAACAAACTATATAGAAACATAACGCTT
CTATGGCCAATATTATAAACAAGCTGAGAACATTTTCAGGCTTTATGGAC
TCTACAGTGCCAAATTTATTAGGAAATTGCACAAAAATTCTAAAAAAATG
ATGAAATTAGGCACATTTTAAGAACATTTTTAGGCTTGGAACTCAAAAGA
TTAAGATCTGAAGGCTTAAAAATAGGATATTCTTGTAAAAATCGTGTAGT
CGTAATAGCCTCAAGCAGAAAAGCATAAATCGACAGACAGTCAAGCTCCA
ACATCTCCCTTTTTCGTGTTTAATTTACATGAACAACAGTAGTTTTTTGA
GAGAGCGGGATTGTTTATCTTGTCAGCAGTTACACCCTTTTATAGTAAAC
ATTGTCTCGTAAAACTTTTTTCTTTCTATTTTTTTTTTAACTTATAATGT
TTTATGAAGTTCAAATTTTAGTTGCTTGACACCCTGACAAGAGGAAGACC
AACCAACTCACAACTTTTCACTTCACCTTTTTACGTGGTTTTTTTTAACT
TCAATTTTACAAACATGCCAGTAAGTAAAATTTTCTTTCTATGATCATTG
TCAACATAATCAAAATAATTGTTATTTTTGTCTTCTAACCTTACGATCAA
TTTTTTTTGTTTCCTTTTGATTATTAACCATTAGGTTAGAATGACATTAC
CCCTTTTCATCTTGCCAAATCAAATTCCTATTTTCAGTTTTCTTTGAGCT
TGAGGAGGTGCAGTCCTTAAGGGTTTTGTCACGTTGAAATTACATATTAA
TTTACTATACACTTAGAAAACGCGTATGACCCACAAATATTTCAAAAACA
CTAGATAGAACTATTCTTCCCTAGCTGAAGCAAAACGATCCGCTATCTTT
GCTGAGAGTAGACCACAGTTTGGTGCCTGCAATTCGATTCAAGACCATTC
TTTCACCCCCTCGCTGCGCGCCATGCAAGTCGTTTATTTTGATTTAACAA
ATTGCCGGTCCCGAATTATGGTCTACTTTTTACAAATATGGCGGATTATT
TTGCTTTAACTGTCGTTGCTGGGTAAATACAGAGTAGCTCTATCTATTGT
TTTATATATGTGGTAAAACCTGCGTAAGATTTGAGAATTTCACTTCAATC
CTTTTTTGTTTGTTTACAAGGCGGGATTGCAAACATTAAGCGAGATACCA
TTAAAGAGCAATAGTTGAAAACGAAATAAGTTCAGCACTTGAACATCATA
CTCTTAGGTGCCAAATAAACGGTCCCCCCCGCTTGTTAATTTTACGAAAA
TTTTCCAACCCCCCCGGACCTTATTAGGACCCCCCCGTTTATTAATTTTA
AAGAATATTTTCAGTTGGCTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGTTT
ATTCCAACCCCCCCGTTTATTTGGCACCTAAGAGTAAGGATCTCTATTTT
CTGGAGAGGTCAATACACCTCCCTTCTAAGACTAAACTTTAGCTCGTCCC
CTGGTCATACAGACTTTATTGACGTTCTTTAGGACGCTGGATAATTATCC
GGCGCTATCACATATCAGTAATCATCAAAAAGCCGATATAACACAGGGAA
CGAAGTTAGTAAAAACTGTACGAAAAATCCTTGTATTATTTAGGATTCAG
GAATCGACATCCCACAAGAAGTGGTTGCTGCTTTGAGTGTTATGGAACAA
ATCGCCAAGAACAGCAAAGATTTTGTGGTCATTGACATGAATCAACGCAA
AGTAAAAGGTATTATTTTGTTGTTCTTTCATATATCACAGTTCGAAGAAT
CTTCCTTTAGAAAATTTATTTACCCCTGAAAAAAAATCTTTTTTTTAATA
TGAAAAAAACAACAAAAGAAAACAAGAAATACACAGTGACCTCTTTAAAA
ATAACCTTTATTACAAGGTGGGAAATTTTTTTTAATTTCGAAAAGATAGA
ATCAACCTTTTTTTAGACCAATCCTGATTTTTAGATACGATTTTTTTTCA
GGAAAACAACTTATTTTTGACATTACCGTTGGCACACAGCAGGAGGCTGG
AAAAGCAGAGGAAGCTTACGAAGGAAAGGATTTGGGAAGTGTAGATTGTG
TTTTCCAATCTGTCAAAGATATGTTGGTGAAAGATTACAAGGACGATGGA
TGTTTCGTCCAGTTCTATTTAAACTATCTTTTGGAAGGAAACCGTGAGCA
AAACAAACTCATGTTCCTGACCTGGTAATTTAAAAACTCTTTTTTTTTAA
TGGAATAATCAGAACCCCTTCTCACAGACCTGGTAGGGTTTTCCAGTTTT
TCGATTGGGAGTAAATATCCAATAGTTCTTATGGCTGGGGATTTAAATTC
CATTGTATTTTCAAGTCAGAAAATCAGTGGGGACGGGAAAAAAGCATGAC
ATTTTGCAGTTAGGATTGGTTACTTGAATATGATTATTTTCATTAGGGAC
AAAAATTGGAGTATAATTTTCCACTGGGGAAGATGTTTTGACCAATTCTT
CCAGTTGCAAGGGGTCCCACTGGGTCTGTGAGAAGTGAGTGTATAATCAG
ATGGTTTGCAATTTTTTTGCCTAATTGTTTTTCAAAGTTATCTCAAATTC
ATCAATTTGAAATTGCTAAAAATGGGTTCTCTTACACGGTTATTCGAAGT
AAGATGGCTTTCCCCTTGGATCTGTTTTTTTCACTCAGGTAAAAATTCAA
TCAATTATTCGAACTTGGGTGTGTTTTTAGGGTATGTCTCAAAAACCCTA
ACAGTTTATTCTAATTGAGACCGAAATCAGCCATTTTCAGAGATGAACTT
CGGGCTCAAAAGAGCTACCTTGAAGTTTATGGATTATGTGGCCTAGCAAA
GTATTACCCGAAAAATTAGACACACATTAGCTCACCTGTTTGCTCAAATT
CTATAGGCATTTTCTAACGGAAGCACCCGAAAAAAGCCGGATTTCGACCG
CCGTGTTTCTTTTTTAGAATCAGAGGGGATTAAATCCCGGCTAATTTTGC
GTTTCCGTTAAAAAATGACTTACAAGTATATCAAAAACAAAATAGAATAA
CATTTTTTCAATTCCTACATCAACAGGTGTCCAGACAGTACGAACATTAA
GAAGAAAATGACCATGTCTTCCACAAGTCAAAATTTGATCAAGAAAGCGC
CCAAAGGAGCTATTGGACACACTGTTAACGATATCCAAGATTTGAATTAC
AAAGATTTCTGCACCGTTGCAAGTGCTGGTAAATGTAAATAAACCTTCTC
TGTTGCGCATTTCCCGGACATTCCTCACGACTACCAAATACCGGACAGTC
GAGAATTTGGTGTCTTATAGTATTATTTTTCTTATTAGGGTATGACGTTA
GTTTAGGAATTCTTTTTACTAGTTTTCTAGCCTTCGCTCTCGAATTTGAA
AAATAGGACATTCTTCAATCTTGAATGTGATACCCGAAAGAAAATCATAG
TTTCAAAAAAAAAGTATGTTCATATTTCTATACAGTCGATATTTGCTGGT
CATGAAGGAAATCTTTTGTATTATAGCTATATGTTTTTTTTTTACGAATT
AATATATTTATGTTGTTTTCTTATTTGGAAATAAATAAATTGCTTACAAA
GAAATTTATTTCTTGTAATGGTCTGTTTAAGTTTTTGGACCTACCCCGGT
GGGGTAGAGGTCCTATAAATTAACCGATGTCCGTCCGTCCGTCCGTCCGT
TCGTTCGTCCGTCCGTCTGTTACNATTTTGCAAGATGGACTTTTTGATCA
GATTGAAGAACAAATGCATTTTCAGTTTTTTGGACCTACCCCGGTGGGGT
AGAGGTCCTATAAATTAACCGATGTCCGTCCGTCCGTCCGTCCGTCCGTT
CGTTCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGT
TTTTTCTGATTTTTGGCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017688-exon-sc0000273-1575043694:131470..132089 | TCONS_00017688-exon-sc0000273-1575043694:131470..132089 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1575043694:129482..129596 | TCONS_00017688-exon-sc0000273-1575043694:129482..129596 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1575043694:129016..129238 | TCONS_00017688-exon-sc0000273-1575043694:129016..129238 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1575043694:127320..128163 | TCONS_00017688-exon-sc0000273-1575043694:127320..128163 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1510915933:131470..132089 | TCONS_00017688-exon-sc0000273-1510915933:131470..132089 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1510915933:129482..129596 | TCONS_00017688-exon-sc0000273-1510915933:129482..129596 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1510915933:129016..129238 | TCONS_00017688-exon-sc0000273-1510915933:129016..129238 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1510915933:127320..128163 | TCONS_00017688-exon-sc0000273-1510915933:127320..128163 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1491911889:131470..132089 | TCONS_00017688-exon-sc0000273-1491911889:131470..132089 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1491911889:129482..129596 | TCONS_00017688-exon-sc0000273-1491911889:129482..129596 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1491911889:129016..129238 | TCONS_00017688-exon-sc0000273-1491911889:129016..129238 | Clytia hemisphaerica | exon |
| TCONS_00017688-exon-sc0000273-1491911889:127320..128163 | TCONS_00017688-exon-sc0000273-1491911889:127320..128163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:127320..132089 - |
Blast
The following BLAST results are available for this feature:
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