TCONS_00017683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017683
Unique NameTCONS_00017683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017683 ID=TCONS_00017683|Name=TCONS_00017683|organism=Clytia hemisphaerica|type=transcript|length=489bp
gagaaTTTCTCTATgatcaatttaaaaacaacatATAGTAAAGCAAAAAG
TATGTTCCATGCAAGTAATTATTGCCTAGAATAATGTATAATCATATGAA
AGCTGGCAGTTTTGAATGAATCTCATTTGATGTTTTGCTACATTTTCTTC
ATTCAAAGtgttgagctgaaattgaaagatgaaaatCAAGAAGTGACAAT
CGGAATTATTGAATCCAAAGCAGAAGTCTTGTCAGGTTTGGTAAGCAACA
ATCAGTATTGTATTTTTACTTGTACTGTAAGAAAGCAAGTGAATTTGTTG
GTAAATTGTTTCTGGATATTGGTTgaattaacaaaagaaattaatatttt
tggactttgaatgaatattttggCAAATACGCAAGgattattttaaaata
ttggAAGCCTGGAAACCTGGCTTTACAGAATCCTATTATGTTTGTTGAAA
GCTACTGTCAAAATTAGATTCCTATGAGAATATAGTTTA
Run BLAST on NCBI

transcript from alignment at sc0000273:41140..42014-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017683 ID=TCONS_00017683|Name=TCONS_00017683|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at sc0000273:41140..42014- (Clytia hemisphaerica)
GAGAATTTCTCTATGATCAATTTAAAAACAACATATAGTAAAGCAAAAAG
TATGTTCCATGCAAGTAATTATTGCCTAGAATAATGTATAATCATATGAA
AGCTGGCAGTTTTGAATGAATCTCATTTGATGTTTTGCTACATTTTCTTC
ATTCAAAGGTAAGTTGTTGTTGTTATTACCAAGAATATCATTTCATTTGA
AGTGAAAGTTAAGATTATGAGCAACACTAGCAATGTGGAGATGGATTTCT
CCCAATTCACTGTCTCTGGCTCTGTCCAGTCAGTAGACTGGATGACATTG
TTGTGCGTTCGAGTCTCGCTGGATCAGTTGGTTTTCCAACGGTTCTGGTG
GCTCGTCAGAAGACAACACGAGAGCGACTGTATTCACTCCATTGTAACAC
ATCAGGGCAAAATTCAGGAAGTTTTTAAAAATTGATTTTATAAATTTATT
CTGTAAATTGATTCAAATTGAACTAAAATTAGTCAATATAAAAACCTTGA
AATAATGAAATATATTTAAGAAAGTTTTTTCTTTCATTTTTCAGTGTTGA
GCTGAAATTGAAAGATGAAAATCAAGAAGTGACAATCGGAATTATTGAAT
CCAAAGCAGAAGTCTTGTCAGGTTTGGTAAGCAACAATCAGTATTGTATT
TTTACTTGTACTGTAAGAAAGCAAGTGAATTTGTTGGTAAATTGTTTCTG
GATATTGGTTGAATTAACAAAAGAAATTAATATTTTTGGACTTTGAATGA
ATATTTTGGCAAATACGCAAGGATTATTTTAAAATATTGGAAGCCTGGAA
ACCTGGCTTTACAGAATCCTATTATGTTTGTTGAAAGCTACTGTCAAAAT
TAGATTCCTATGAGAATATAGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009890XLOC_009890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017683-exon-sc0000273-1575043694:41857..42014TCONS_00017683-exon-sc0000273-1575043694:41857..42014Clytia hemisphaericaexon
TCONS_00017683-exon-sc0000273-1575043694:41140..41470TCONS_00017683-exon-sc0000273-1575043694:41140..41470Clytia hemisphaericaexon
TCONS_00017683-exon-sc0000273-1510915933:41857..42014TCONS_00017683-exon-sc0000273-1510915933:41857..42014Clytia hemisphaericaexon
TCONS_00017683-exon-sc0000273-1510915933:41140..41470TCONS_00017683-exon-sc0000273-1510915933:41140..41470Clytia hemisphaericaexon
TCONS_00017683-exon-sc0000273-1491911889:41857..42014TCONS_00017683-exon-sc0000273-1491911889:41857..42014Clytia hemisphaericaexon
TCONS_00017683-exon-sc0000273-1491911889:41140..41470TCONS_00017683-exon-sc0000273-1491911889:41140..41470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:41140..42014 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39377	1.85338	2.58234	1.26321	2.9048	2.02536	0.325802	1.22005	0.106773	0.396766	0	0.253157	0.168537	0.700108	0	0	0	0.194986	0.673458	0	0.612534	0.537791	1.30751	0.792477	0.408117	0.364234	0	0.185419	0.281268	0.859703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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