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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017682 ID=TCONS_00017682|Name=TCONS_00017682|organism=Clytia hemisphaerica|type=transcript|length=1376bp
agATTATGATGATTATAGCGACCACGGCACCTTCGTTGACAAAAGTGATT
TGATGGCCAGTGTCAAAGAGATGACAATTCTTTGTCATCTACTCAATGAT
CGTGAAATGGTTagtctttgtacaaaaaacgTGAAGGAGTTGGTGCGAAA
AGTTAAAACACATTTGGAAGTAACCAAAAACGACACATTGATAATCAGAT
CGccaaaaaaaacgacaaaagaaGCGAAAGTCGCCCTTAAATCTTTCCAA
TCTGCGAAGCCCGCCAAAAGGCTCAAGATCCGTTCCGAAGCATCCCTTTA
CCGGCAGATTTGGCGTATCTGCGGAAGTTACCCGTCAATGGTACAGGGCA
AAACACATACTTGTGGATGAAGATGATGTTGAAATTAATGTCATCGAAGA
TGGCTGTGTGTACGAGGTGCCTGAATTTGCAGACTGCGCGCAACCGCCAT
CACCCTGCACGCAACCGTCATCACCTTCCCATTTTCAAACATCCGATTTC
ATGGCAATAAAAGATGTTAAGGGAAAGAAACGTCGTCTTGACTCAAGTGC
CTGCCTTTACAACAACGACATCAAACAACAACTGTCATCGCctgtttttt
gaaagaaaactcCGTTAAAAGCGCCCTTGGGTTGATGGCTGATCGGTTTC
CTGATGTGAAAGGATTTGAATCCACAGCCCAACTGAAGCTTTATCACCTT
TATCTGCGCATGGTACGAATTTTGTGCAGATACTTCACAATGGAGAGAAC
CACTTGATAACGGTTGCCTCATCGAAACAAGATGAGGTCGTTATCGATGA
TTCTCTCGACTTTCCACTCAATTCGAACTTGCAGCGACAAATTGCCCAAC
TCGTACATTGCAAGGAAAGCCAAATACGGGTCACAAGGGCTTCTGTCCAG
CAGCAAACAAACAGCGTCAACTGTGGCTTGTTTGCAATCGCTTTTGCGTT
TGATGTTAGCGCTGGACGTGACCCTACGCCCATCCATTACGATGAAAGTT
GTATGCGGGATCATCCCGCAAAATGCCTGAAGGAGAAGCAACTGGAAAGG
TTCCCGATATTAACGAAGAGAATCAGGTCAAAATGTTCTAGCCGTTTAAT
ACTCATTGATATTTACTGTGTGTGTCGCGACATTTTTATTGAATTGGAGG
TGGAAACAAAGAATGGAAGGTCTATGGCTATGTGCTCCATATGCGATGAG
TGGTATCACAGAGAATGCCTCAACATACctgtgaaatattttaaatcaga
ggctttggccaaaatattataCTTGGTTAAATCTCtactttcttttgaaa
tttgattttgactatttttgaagCTATATTACAACAGTTTGAATCCATTG
TTTCCATGCATTTACATAAACTTCTG Run BLAST on NCBI protein sequence of TCONS_00017682-protein >TCONS_00017682-protein ID=TCONS_00017682-protein|Name=TCONS_00017682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
DYDDYSDHGTFVDKSDLMASVKEMTILCHLLNDREMVSLCTKNVKELVRK
VKTHLEVTKNDTLIIRSPKKTTKEAKVALKSFQSAKPAKRLKIRSEASLY
RQIWRICGSYPSMVQGKTHTCG Run BLAST on NCBI transcript from alignment at sc0000273:355352..357000+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017682 ID=TCONS_00017682|Name=TCONS_00017682|organism=Clytia hemisphaerica|type=transcript|length=1649bp|location=Sequence derived from alignment at sc0000273:355352..357000+ (Clytia hemisphaerica)
agATTATGATGATTATAGCGACCACGGCACCTTCGTTGACAAAAGTGATT
TGATGGCCAGTGTCAAAGAGATGACAATTCTTTGTCATCTACTCAATGAT
CGTGAAATGGTTagtctttgtacaaaaaacgTGAAGGAGTTGGTGCGAAA
AGTTAAAACACATTTGGAAGTAACCAAAAACGACACATTGATAATCAGGT
GAGAGTTATGCTTTCTTTCTACGTtaatttatctttaaaaaattggttGT
GTAAATTCATAAGTTTTGCCTCAAAGAAATCTTCagcgaaaacaaagaaa
gctcTTTAGTAGCTTTTAATAGAAATCGAATTAGGTAAATaatgaaacaa
aatgaaaatgaaaaaaaatgaagaagaaaaatttttaattcaaatcttTC
GCCATTTTTTTTCTACGCGAAAAAAAAGGGTGTGACAATTTATTGATTCG
TTCATTATAAATTTCTTTCAGATCGccaaaaaaaacgacaaaagaaGCGA
AAGTCGCCCTTAAATCTTTCCAATCTGCGAAGCCCGCCAAAAGGCTCAAG
ATCCGTTCCGAAGCATCCCTTTACCGGCAGATTTGGCGTATCTGCGGAAG
TTACCCGTCAATGGTACAGGGCAAAACACATACTTGTGGATGAAGATGAT
GTTGAAATTAATGTCATCGAAGATGGCTGTGTGTACGAGGTGCCTGAATT
TGCAGACTGCGCGCAACCGCCATCACCCTGCACGCAACCGTCATCACCTT
CCCATTTTCAAACATCCGATTTCATGGCAATAAAAGATGTTAAGGGAAAG
AAACGTCGTCTTGACTCAAGTGCCTGCCTTTACAACAACGACATCAAACA
ACAACTGTCATCGCctgttttttgaaagaaaactcCGTTAAAAGCGCCCT
TGGGTTGATGGCTGATCGGTTTCCTGATGTGAAAGGATTTGAATCCACAG
CCCAACTGAAGCTTTATCACCTTTATCTGCGCATGGTACGAATTTTGTGC
AGATACTTCACAATGGAGAGAACCACTTGATAACGGTTGCCTCATCGAAA
CAAGATGAGGTCGTTATCGATGATTCTCTCGACTTTCCACTCAATTCGAA
CTTGCAGCGACAAATTGCCCAACTCGTACATTGCAAGGAAAGCCAAATAC
GGGTCACAAGGGCTTCTGTCCAGCAGCAAACAAACAGCGTCAACTGTGGC
TTGTTTGCAATCGCTTTTGCGTTTGATGTTAGCGCTGGACGTGACCCTAC
GCCCATCCATTACGATGAAAGTTGTATGCGGGATCATCCCGCAAAATGCC
TGAAGGAGAAGCAACTGGAAAGGTTCCCGATATTAACGAAGAGAATCAGG
TCAAAATGTTCTAGCCGTTTAATACTCATTGATATTTACTGTGTGTGTCG
CGACATTTTTATTGAATTGGAGGTGGAAACAAAGAATGGAAGGTCTATGG
CTATGTGCTCCATATGCGATGAGTGGTATCACAGAGAATGCCTCAACATA
CctgtgaaatattttaaatcagaggctttggccaaaatattataCTTGGT
TAAATCTCtactttcttttgaaatttgattttgactatttttgaagCTAT
ATTACAACAGTTTGAATCCATTGTTTCCATGCATTTACATAAACTTCTG Coding sequence (CDS) from alignment at sc0000273:355352..357000+ >TCONS_00017682 ID=TCONS_00017682|Name=TCONS_00017682|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0000273:355352..357000+ (Clytia hemisphaerica)
gATTATGATGATTATAGCGACCACGGCACCTTCGTTGACAAAAGTGATTT
GATGGCCAGTGTCAAAGAGATGACAATTCTTTGTCATCTACTCAATGATC
GTGAAATGGTTagtctttgtacaaaaaacgTGAAGGAGTTGGTGCGAAAA
GTTAAAACACATTTGGAAGTAACCAAAAACGACACATTGATAATCAGATC
GccaaaaaaaacgacaaaagaaGCGAAAGTCGCCCTTAAATCTTTCCAAT
CTGCGAAGCCCGCCAAAAGGCTCAAGATCCGTTCCGAAGCATCCCTTTAC
CGGCAGATTTGGCGTATCTGCGGAAGTTACCCGTCAATGGTACAGGGCAA
AACACATACTTGTGGATGAgATTATGATGATTATAGCGACCACGGCACCT
TCGTTGACAAAAGTGATTTGATGGCCAGTGTCAAAGAGATGACAATTCTT
TGTCATCTACTCAATGATCGTGAAATGGTTagtctttgtacaaaaaacgT
GAAGGAGTTGGTGCGAAAAGTTAAAACACATTTGGAAGTAACCAAAAACG
ACACATTGATAATCAGATCGccaaaaaaaacgacaaaagaaGCGAAAGTC
GCCCTTAAATCTTTCCAATCTGCGAAGCCCGCCAAAAGGCTCAAGATCCG
TTCCGAAGCATCCCTTTACCGGCAGATTTGGCGTATCTGCGGAAGTTACC
CGTCAATGGTACAGGGCAAAACACATACTTGTGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017682-exon-sc0000273-1491911889:355352..355549 | TCONS_00017682-exon-sc0000273-1491911889:355352..355549 | Clytia hemisphaerica | exon |
| TCONS_00017682-exon-sc0000273-1510915933:355352..355549 | TCONS_00017682-exon-sc0000273-1510915933:355352..355549 | Clytia hemisphaerica | exon |
| TCONS_00017682-exon-sc0000273-1575043694:355352..355549 | TCONS_00017682-exon-sc0000273-1575043694:355352..355549 | Clytia hemisphaerica | exon |
| TCONS_00017682-exon-sc0000273-1491911889:355823..357000 | TCONS_00017682-exon-sc0000273-1491911889:355823..357000 | Clytia hemisphaerica | exon |
| TCONS_00017682-exon-sc0000273-1510915933:355823..357000 | TCONS_00017682-exon-sc0000273-1510915933:355823..357000 | Clytia hemisphaerica | exon |
| TCONS_00017682-exon-sc0000273-1575043694:355823..357000 | TCONS_00017682-exon-sc0000273-1575043694:355823..357000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:355352..357000 + |
Blast
The following BLAST results are available for this feature:
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