|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017681 ID=TCONS_00017681|Name=TCONS_00017681|organism=Clytia hemisphaerica|type=transcript|length=990bp
GTACATAGTATCCAAGGATAAAACAATGGGTCCTTGCTTACCGTCCAGAT
GACTTATCTGTCAACACCAATAATGGTACCGAGCGAATCAACAAAGCATT
GAAAGAGGGTGGATTACTGGATGAAAGGCGAAGCACCGTAACTGTTTTGC
TCAATCAGATCATTTATAATTTCATTCCAGAACTTCAAAATAGTTATGAG
CAACTCAATGTGGAgttCTCCTCAAAACATAGATCCTATGATTCAAACAT
TCCGAAGTATCTGGTTAACCGGTCGAAGAATTTCCTGGAACACAGTATGC
AAAGGCTCAAAAATGTGACAACCTAGCTGAAAAATTCCGTTGAAGTTATC
GAACTTGGTGTCTTTTCTGTCTTGAGCCAAGCttgctttttcaaagaaaa
ttcaaagcAAGAAGTGAAGCAAGAGACCAAAGAGGATATCAAGTTAGTAG
AAATAAATTCTAGAGAGGAAAACGAGAGCTCCACCGAAGAGAATCAAGAC
AAGACAGAAGAAGTTCTCAAGAAAAAGTAAACGTATCACCAGGCTCAAAA
CAAAACCCTTTTATTTTATTGGGTGACGAAGAACATGAAGTTGACAAAAG
AAACGTGGTGCGGCTTGGAACTGATGCACATGTTGGATCTTGTGAGTGTC
GCGACTTCAAACGTCACAGGTCCCTGTGTAAGCATTTTCTTGCTATCATC
GAAAGTGCTCATTGCAATTTCAATGATCTTTCAGTGCTGTTCAGAAATGA
TCCTTTGAATGTCCTGGATTCGAATATTTTTGGTGAGGAGAATGTTTCAG
ATATTGCGGATGAAGTGCGAGACGACAGTAGCCCAATTGTTAATGAAGTT
GACTACAATTCTTACCTTGAAAATCAAACCGGATACAGGTTAATTTTTAT
TTCACATTTATCAAAATCTATAACAGCTTTCAACACAAGCAAattctttt
gtaaaatttaATTCGAGATTTGTCAGTTGCTTTCGTATCT Run BLAST on NCBI transcript from alignment at sc0000273:354044..355233+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017681 ID=TCONS_00017681|Name=TCONS_00017681|organism=Clytia hemisphaerica|type=transcript|length=1190bp|location=Sequence derived from alignment at sc0000273:354044..355233+ (Clytia hemisphaerica)
GTACATAGTATCCAAGGATAAAACAATGGGTCCTTGCTTACCGTCCAGAT
GACTTATCTGTCAACACCAATAATGGTACCGAGCGAATCAACAAAGCATT
GAAAGAGGGTGGATTACTGGATGAAAGGCGAAGCACCGTAACTGTTTTGC
TCAATCAGATCATTTATAATTTCATTCCAGAACTTCAAAATAGTTATGAG
CAACTCAATGTGGAGTAAGTTTTATTCTGTTTTTAATTCTAGTTAGCATC
TGGGTAATTTACATCTGGAGTAAGCGGGTGGACGTCATGTCAGATACTTG
GTGTAGAAGCGTTTGTCCTAAAAAGGCAGTCACTTAGTTAGTGCCAATAA
CGTAGTGTAATAATTGCTCTTAACcatttcattttctaattttaccgaac
actttcatttttaggttCTCCTCAAAACATAGATCCTATGATTCAAACAT
TCCGAAGTATCTGGTTAACCGGTCGAAGAATTTCCTGGAACACAGTATGC
AAAGGCTCAAAAATGTGACAACCTAGCTGAAAAATTCCGTTGAAGTTATC
GAACTTGGTGTCTTTTCTGTCTTGAGCCAAGCttgctttttcaaagaaaa
ttcaaagcAAGAAGTGAAGCAAGAGACCAAAGAGGATATCAAGTTAGTAG
AAATAAATTCTAGAGAGGAAAACGAGAGCTCCACCGAAGAGAATCAAGAC
AAGACAGAAGAAGTTCTCAAGAAAAAGTAAACGTATCACCAGGCTCAAAA
CAAAACCCTTTTATTTTATTGGGTGACGAAGAACATGAAGTTGACAAAAG
AAACGTGGTGCGGCTTGGAACTGATGCACATGTTGGATCTTGTGAGTGTC
GCGACTTCAAACGTCACAGGTCCCTGTGTAAGCATTTTCTTGCTATCATC
GAAAGTGCTCATTGCAATTTCAATGATCTTTCAGTGCTGTTCAGAAATGA
TCCTTTGAATGTCCTGGATTCGAATATTTTTGGTGAGGAGAATGTTTCAG
ATATTGCGGATGAAGTGCGAGACGACAGTAGCCCAATTGTTAATGAAGTT
GACTACAATTCTTACCTTGAAAATCAAACCGGATACAGGTTAATTTTTAT
TTCACATTTATCAAAATCTATAACAGCTTTCAACACAAGCAAattctttt
gtaaaatttaATTCGAGATTTGTCAGTTGCTTTCGTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017681-exon-sc0000273-1491911889:354044..354257 | TCONS_00017681-exon-sc0000273-1491911889:354044..354257 | Clytia hemisphaerica | exon |
| TCONS_00017681-exon-sc0000273-1510915933:354044..354257 | TCONS_00017681-exon-sc0000273-1510915933:354044..354257 | Clytia hemisphaerica | exon |
| TCONS_00017681-exon-sc0000273-1575043694:354044..354257 | TCONS_00017681-exon-sc0000273-1575043694:354044..354257 | Clytia hemisphaerica | exon |
| TCONS_00017681-exon-sc0000273-1491911889:354458..355233 | TCONS_00017681-exon-sc0000273-1491911889:354458..355233 | Clytia hemisphaerica | exon |
| TCONS_00017681-exon-sc0000273-1510915933:354458..355233 | TCONS_00017681-exon-sc0000273-1510915933:354458..355233 | Clytia hemisphaerica | exon |
| TCONS_00017681-exon-sc0000273-1575043694:354458..355233 | TCONS_00017681-exon-sc0000273-1575043694:354458..355233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:354044..355233 + |
Blast
The following BLAST results are available for this feature:
|
