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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017667 ID=TCONS_00017667|Name=TCONS_00017667|organism=Clytia hemisphaerica|type=transcript|length=1351bp
CGATCAAACATTTTCTACCAAGATCAAATATTTGGGAAATTACTGAAGAA
ATTACAAGATGATTTCAAGACTACTTTATCTGACTGCTGCCATTTTTGTT
GCCATTCATGGAAAAAGCATCAAGTTGCCAGGCAACTGCTACCACAACGA
TCTGAAACAAAGTTCTGAAAGATGTGATGCCTTCATCCAATGTGCAAATG
GAGTACCTGNTCAAAATATCTGTCCAGAGATTAAAGATGCTGACAAGAAT
CCTCTCTCTGGTGGATACAAACGTCTCTTTTTCAATGAAGCCAAGCAAGT
CTGTGATTGGCCTGTTCATACTTATTGTCCCTCAGGACCAGGCCCCGACA
AACCGACAACAACGACCAAAAAACCGATAACGACTAGCACCAAAAAACCG
ACAACGACTACCACCGAATTGGAAACAACAACTGAAGTAATCACCACGAC
CGAAGAACAAACGACGACTAAACTCGTAGAAACAACAACTGAACCATTTA
CGACCACTGAAACAATTACAACTACCGAACCAATAACGACTACCGAACCG
TTTACAACCACCGAAGAACAAACGACGACTGAATTCGTAGAAACGACAAC
TGAACCATTTACAACCACTGAACCATATACGACTACAGAACCGATAACAA
CCACCGAACCGTTTACAACAACCGAAGAAAAAACGACAACAGAATTCGTT
GACACAACCACCGATTATTTTACCATGACAACTGACGCAACAACCGACTT
TATAGTTACAACTACCGAGTTCAAAACGACGGAACCCGATCAATACGTAC
GACGAGTTTGCTACGGTAAAGACCGACGACCAGGAAGTTTCAAAGCACCC
AGAACAGGTCTTATTCGTAGCTTCACACTGAGGCATGTTAGTGGTTTTGC
CAATTGTCAAGGAGGTAGACCAGGATTCTGGAATTGCATTCGTGAAGGTG
ACTACGAATATTTGAACACCATCATCACTGTTCAAGATTCCAGACCTGGT
AAACCAAATGctgatgttgttgtttttccGCAACAGTTCGAATTCAACCG
CATAAATGATGATGGTGAATTTATGATCAGTGGTCTTACAGCGATCAGTG
ATTCTATCACCATCTTCAAAGATAAGTATGAAGTGACCAGTGGTGATGTC
ATCTCCATTCATTACGGTAGTCATTATCTTAACAGAAACATTGGTGTTAC
TACCAATGGTCATTGTGTTGATGTCACTTTggaatatttctaaaaaacat
tttggaagataatttgaaaagaaaaaagaaaggtGGAAGACTGAAGATAT
TCCTAAAGAATTAATGGGGGCCCATTAATGTTATGGAATTAATAATGTAA
A Run BLAST on NCBI protein sequence of TCONS_00017667-protein >TCONS_00017667-protein ID=TCONS_00017667-protein|Name=TCONS_00017667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MISRLLYLTAAIFVAIHGKSIKLPGNCYHNDLKQSSERCDAFIQCANGVP
XQNICPEIKDADKNPLSGGYKRLFFNEAKQVCDWPVHTYCPSGPGPDKPT
TTTKKPITTSTKKPTTTTTELETTTEVITTTEEQTTTKLVETTTEPFTTT
ETITTTEPITTTEPFTTTEEQTTTEFVETTTEPFTTTEPYTTTEPITTTE
PFTTTEEKTTTEFVDTTTDYFTMTTDATTDFIVTTTEFKTTEPDQYVRRV
CYGKDRRPGSFKAPRTGLIRSFTLRHVSGFANCQGGRPGFWNCIREGDYE
YLNTIITVQDSRPGKPNADVVVFPQQFEFNRINDDGEFMISGLTAISDSI
TIFKDKYEVTSGDVISIHYGSHYLNRNIGVTTNGHCVDVTLEYF Run BLAST on NCBI transcript from alignment at sc0000273:90679..93247+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017667 ID=TCONS_00017667|Name=TCONS_00017667|organism=Clytia hemisphaerica|type=transcript|length=2569bp|location=Sequence derived from alignment at sc0000273:90679..93247+ (Clytia hemisphaerica)
CGATCAAACATTTTCTACCAAGATCAAATATTTGGGAAATTACTGAAGAA
ATTACAAGATGATTTCAAGACTACTTTATCTGACTGGTAAGTCAAATGTG
AAATTTGTACCTTCAtttagatagagtcgatattttacttGGATAGGCAA
GTAATCTAGGGCTTTTAGGCAgccttttgattgttttcacggggtgtAAC
GGCTAGCTGGCTCGGCTATCTGtaaactgaacggaacattggaagaagcg
gggatttgaaccggggatttGAACCGGGTACCCCTGGTTTAAGAAGATGA
CGCCTTTTACCACTCGGTAATCGCCTCTTGATACCATCATTGTTAATAGG
ATATGCATTTGTGCACGGAATATTATAACAAACGTCGATTATTATAATTT
TCTTTAACTATAAAGCTGAAATTGTTTGAGGAATTTCTCAAATCGGAAGA
AGTTATCTTCAACCTTCAACTTGAGGTATCTTGAGTTTTGAGGAATGTAA
AGAGTGATTGATAATGAAATTAAAAGTTGCTGAActatttcatttcttta
tttgTCGTATTGGCTGTATCTGTTCATTTTTTCCATCAGTTAGGATTTAA
GGAACTCCACAAGGGTTGAAAcgtttttatcttcattttacAGCTGCCAT
TTTTGTTGCCATTCATGGAAAAAGCATCAAGTTGCCAGGCAACTGCTACC
ACAACGATCTGAAACAAAGTTCTGAAAGATGTGATGCCTTCATCCAATGT
GCAAATGGAGTACCTGTTCAAAACATCTGTCCAGAGATCAAAGATGCCGA
CAAGAATCCTCTCTCTGGTGGATACAAACGTCTCTTTTTCAATGAAGCCA
AGCAGGTCTGTGATTGGCCTGTTCATACTTATTGTCCCTCAGGACCAGGT
CCCGACAAACCAACGACAACGACCAAAAAACCGACAACGACTACCACCAA
AAAACCGACAACAACTACCACCAAAAAACCGATAACGACTACCACCAAAA
AACCGACAACAACTACCACCGAATTGGAAACAACAACTGAAGTAATCACC
ACGACCGAAGAACAAACGACAACTGAATTCGTAGATACAACAACTGAACC
ATTTACAACCACTGAACCATATACGACAACCGAACCAATAACGACCACCG
AGCCCTTTACAACTACCGAAGAACAAACGACGACTGAATTTGTAGAAACA
ACAACTGAACCATTTACAACCACTGAACCATATACGACTACCGAACCGAT
AACAACCACCGAACCGTTTACAACAACCGGTGAAAAAACGACAACAGAAT
TCGTTGACACAACCACCGATTATTTTACCATGACAACTGACGCAACAACC
GACTTTATAGTTACAACTACCGAATTCAAAACAACCGAACCTGATCAATA
CGTACGACGAGTTTGTTATGGTAAAGGNTCAAAATATCTGTCCAGAGATT
AAAGATGCTGACAAGAATCCTCTCTCTGGTGGATACAAACGTCTCTTTTT
CAATGAAGCCAAGCAAGTCTGTGATTGGCCTGTTCATACTTATTGTCCCT
CAGGACCAGGCCCCGACAAACCGACAACAACGACCAAAAAACCGATAACG
ACTAGCACCAAAAAACCGACAACGACTACCACCGAATTGGAAACAACAAC
TGAAGTAATCACCACGACCGAAGAACAAACGACGACTAAACTCGTAGAAA
CAACAACTGAACCATTTACGACCACTGAAACAATTACAACTACCGAACCA
ATAACGACTACCGAACCGTTTACAACCACCGAAGAACAAACGACGACTGA
ATTCGTAGAAACGACAACTGAACCATTTACAACCACTGAACCATATACGA
CTACAGAACCGATAACAACCACCGAACCGTTTACAACAACCGAAGAAAAA
ACGACAACAGAATTCGTTGACACAACCACCGATTATTTTACCATGACAAC
TGACGCAACAACCGACTTTATAGTTACAACTACCGAGTTCAAAACGACGG
AACCCGATCAATACGTACGACGAGTTTGCTACGGTAAAGACCGACGACCA
GGAAGTTTCAAAGCACCCAGAACAGGTCTTATTCGTAGCTTCACACTGAG
GCATGTTAGTGGTTTTGCCAATTGTCAAGGAGGTAGACCAGGATTCTGGA
ATTGCATTCGTGAAGGTGACTACGAATATTTGAACACCATCATCACTGTT
CAAGATTCCAGACCTGGTAAACCAAATGctgatgttgttgtttttccGCA
ACAGTTCGAATTCAACCGCATAAATGATGATGGTGAATTTATGATCAGTG
GTCTTACAGCGATCAGTGATTCTATCACCATCTTCAAAGATAAGTATGAA
GTGACCAGTGGTGATGTCATCTCCATTCATTACGGTAGTCATTATCTTAA
CAGAAACATTGGTGTTACTACCAATGGTCATTGTGTTGATGTCACTTTgg
aatatttctaaaaaacattttggaagataatttgaaaagaaaaaagaaag
gtGGAAGACTGAAGATATTCCTAAAGAATTAATGGGGGCCCATTAATGTT
ATGGAATTAATAATGTAAA Coding sequence (CDS) from alignment at sc0000273:90679..93247+ >TCONS_00017667 ID=TCONS_00017667|Name=TCONS_00017667|organism=Clytia hemisphaerica|type=CDS|length=3555bp|location=Sequence derived from alignment at sc0000273:90679..93247+ (Clytia hemisphaerica)
ATGATTTCAAGACTACTTTATCTGACTGCTGCCATTTTTGTTGCCATTCA
TGGAAAAAGCATCAAGTTGCCAGGCAACTGCTACCACAACGATCTGAAAC
AAAGTTCTGAAAGATGTGATGCCTTCATCCAATGTGCAAATGGAGTACCT
GNTCAAAATATCTGTCCAGAGATTAAAGATGCTGACAAGAATCCTCTCTC
TGGTGGATACAAACGTCTCTTTTTCAATGAAGCCAAGCAAGTCTGTGATT
GGCCTGTTCATACTTATTGTCCCTCAGGACCAGGCCCCGACAAACCGACA
ACAACGACCAAAAAACCGATAACGACTAGCACCAAAAAACCGACAACGAC
TACCACCGAATTGGAAACAACAACTGAAGTAATCACCACGACCGAAGAAC
AAACGACGACTAAACTCGTAGAAACAACAACTGAACCATTTACGACCACT
GAAACAATTACAACTACCGAACCAATAACGACTACCGAACCGTTTACAAC
CACCGAAGAACAAACGACGACTGAATTCGTAGAAACGACAACTGAACCAT
TTACAACCACTGAACCATATACGACTACAGAACCGATAACAACCACCGAA
CCGTTTACAACAACCGAAGAAAAAACGACAACAGAATTCGTTGACACAAC
CACCGATTATTTTACCATGACAACTGACGCAACAACCGACTTTATAGTTA
CAACTACCGAGTTCAAAACGACGGAACCCGATCAATACGTACGACGAGTT
TGCTACGGTAAAGACCGACGACCAGGAAGTTTCAAAGCACCCAGAACAGG
TCTTATTCGTAGCTTCACACTGAGGCATGTTAGTGGTTTTGCCAATTGTC
AAGGAGGTAGACCAGGATTCTGGAATTGCATTCGTGAAGGTGACTACGAA
TATTTGAACACCATCATCACTGTTCAAGATTCCAGACCTGGTAAACCAAA
TGctgatgttgttgtttttccGCAACAGTTCGAATTCAACCGCATAAATG
ATGATGGTGAATTTATGATCAGTGGTCTTACAGCGATCAGTGATTCTATC
ACCATCTTCAAAGATAAGTATGAAGTGACCAGTGGTGATGTCATCTCCAT
TCATTACGGTAGTCATTATCTTAACAGAAACATTGGTGTTACTACCAATG
GTCATTGTGTTGATGTCACTTTggaatatttctaaATGATTTCAAGACTA
CTTTATCTGACTGCTGCCATTTTTGTTGCCATTCATGGAAAAAGCATCAA
GTTGCCAGGCAACTGCTACCACAACGATCTGAAACAAAGTTCTGAAAGAT
GTGATGCCTTCATCCAATGTGCAAATGGAGTACCTGNTCAAAATATCTGT
CCAGAGATTAAAGATGCTGACAAGAATCCTCTCTCTGGTGGATACAAACG
TCTCTTTTTCAATGAAGCCAAGCAAGTCTGTGATTGGCCTGTTCATACTT
ATTGTCCCTCAGGACCAGGCCCCGACAAACCGACAACAACGACCAAAAAA
CCGATAACGACTAGCACCAAAAAACCGACAACGACTACCACCGAATTGGA
AACAACAACTGAAGTAATCACCACGACCGAAGAACAAACGACGACTAAAC
TCGTAGAAACAACAACTGAACCATTTACGACCACTGAAACAATTACAACT
ACCGAACCAATAACGACTACCGAACCGTTTACAACCACCGAAGAACAAAC
GACGACTGAATTCGTAGAAACGACAACTGAACCATTTACAACCACTGAAC
CATATACGACTACAGAACCGATAACAACCACCGAACCGTTTACAACAACC
GAAGAAAAAACGACAACAGAATTCGTTGACACAACCACCGATTATTTTAC
CATGACAACTGACGCAACAACCGACTTTATAGTTACAACTACCGAGTTCA
AAACGACGGAACCCGATCAATACGTACGACGAGTTTGCTACGGTAAAGAC
CGACGACCAGGAAGTTTCAAAGCACCCAGAACAGGTCTTATTCGTAGCTT
CACACTGAGGCATGTTAGTGGTTTTGCCAATTGTCAAGGAGGTAGACCAG
GATTCTGGAATTGCATTCGTGAAGGTGACTACGAATATTTGAACACCATC
ATCACTGTTCAAGATTCCAGACCTGGTAAACCAAATGctgatgttgttgt
ttttccGCAACAGTTCGAATTCAACCGCATAAATGATGATGGTGAATTTA
TGATCAGTGGTCTTACAGCGATCAGTGATTCTATCACCATCTTCAAAGAT
AAGTATGAAGTGACCAGTGGTGATGTCATCTCCATTCATTACGGTAGTCA
TTATCTTAACAGAAACATTGGTGTTACTACCAATGGTCATTGTGTTGATG
TCACTTTggaatatttctaaATGATTTCAAGACTACTTTATCTGACTGCT
GCCATTTTTGTTGCCATTCATGGAAAAAGCATCAAGTTGCCAGGCAACTG
CTACCACAACGATCTGAAACAAAGTTCTGAAAGATGTGATGCCTTCATCC
AATGTGCAAATGGAGTACCTGNTCAAAATATCTGTCCAGAGATTAAAGAT
GCTGACAAGAATCCTCTCTCTGGTGGATACAAACGTCTCTTTTTCAATGA
AGCCAAGCAAGTCTGTGATTGGCCTGTTCATACTTATTGTCCCTCAGGAC
CAGGCCCCGACAAACCGACAACAACGACCAAAAAACCGATAACGACTAGC
ACCAAAAAACCGACAACGACTACCACCGAATTGGAAACAACAACTGAAGT
AATCACCACGACCGAAGAACAAACGACGACTAAACTCGTAGAAACAACAA
CTGAACCATTTACGACCACTGAAACAATTACAACTACCGAACCAATAACG
ACTACCGAACCGTTTACAACCACCGAAGAACAAACGACGACTGAATTCGT
AGAAACGACAACTGAACCATTTACAACCACTGAACCATATACGACTACAG
AACCGATAACAACCACCGAACCGTTTACAACAACCGAAGAAAAAACGACA
ACAGAATTCGTTGACACAACCACCGATTATTTTACCATGACAACTGACGC
AACAACCGACTTTATAGTTACAACTACCGAGTTCAAAACGACGGAACCCG
ATCAATACGTACGACGAGTTTGCTACGGTAAAGACCGACGACCAGGAAGT
TTCAAAGCACCCAGAACAGGTCTTATTCGTAGCTTCACACTGAGGCATGT
TAGTGGTTTTGCCAATTGTCAAGGAGGTAGACCAGGATTCTGGAATTGCA
TTCGTGAAGGTGACTACGAATATTTGAACACCATCATCACTGTTCAAGAT
TCCAGACCTGGTAAACCAAATGctgatgttgttgtttttccGCAACAGTT
CGAATTCAACCGCATAAATGATGATGGTGAATTTATGATCAGTGGTCTTA
CAGCGATCAGTGATTCTATCACCATCTTCAAAGATAAGTATGAAGTGACC
AGTGGTGATGTCATCTCCATTCATTACGGTAGTCATTATCTTAACAGAAA
CATTGGTGTTACTACCAATGGTCATTGTGTTGATGTCACTTTggaatatt
tctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00017667-exon-sc0000273-1491911889:90679..90764 | TCONS_00017667-exon-sc0000273-1491911889:90679..90764 | Clytia hemisphaerica | exon |
| TCONS_00017667-exon-sc0000273-1510915933:90679..90764 | TCONS_00017667-exon-sc0000273-1510915933:90679..90764 | Clytia hemisphaerica | exon |
| TCONS_00017667-exon-sc0000273-1575043694:90679..90764 | TCONS_00017667-exon-sc0000273-1575043694:90679..90764 | Clytia hemisphaerica | exon |
| TCONS_00017667-exon-sc0000273-1491911889:91322..91443 | TCONS_00017667-exon-sc0000273-1491911889:91322..91443 | Clytia hemisphaerica | exon |
| TCONS_00017667-exon-sc0000273-1510915933:91322..91443 | TCONS_00017667-exon-sc0000273-1510915933:91322..91443 | Clytia hemisphaerica | exon |
| TCONS_00017667-exon-sc0000273-1575043694:91322..91443 | TCONS_00017667-exon-sc0000273-1575043694:91322..91443 | Clytia hemisphaerica | exon |
| TCONS_00017667-exon-sc0000273-1491911889:92105..93247 | TCONS_00017667-exon-sc0000273-1491911889:92105..93247 | Clytia hemisphaerica | exon |
| TCONS_00017667-exon-sc0000273-1510915933:92105..93247 | TCONS_00017667-exon-sc0000273-1510915933:92105..93247 | Clytia hemisphaerica | exon |
| TCONS_00017667-exon-sc0000273-1575043694:92105..93247 | TCONS_00017667-exon-sc0000273-1575043694:92105..93247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:90679..93247 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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