TCONS_00017663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017663
Unique NameTCONS_00017663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017663 ID=TCONS_00017663|Name=TCONS_00017663|organism=Clytia hemisphaerica|type=transcript|length=797bp
ataactccTTGTATTTAACTTGTATTTATAACTTGTATTTATCAAGAAAA
ATCATTCGTATTTTTAAGGAATATCATTCTTTTATTGTTCAAGGGAAATA
ATTGTCCTTTCCAAGAAAAAcattatattttcaaaagaaaactttattca
tgtattttatatattattttacaaggaaaataaaaaaaactacttgCGAA
TCTATGATGATAGTATCAAGAATTATAGACTAAAAATCAAATGGTCTCTT
TGTGACAGTTGTTTGATTGGTGTTGGTGCTCCCTCGGGAGATAATTAGTT
TTTAATGATAATTTACAAACCAAATCGCCACGTTTTTTGAgaggtttttt
ctcattttacaTTTGAAAGTATTCTCATGAAGTCATGTCTATGAGAGAGA
AGGAGTGATTTTTTATGTCTTGGAATCATCTCATGTCaagtttattttct
tcttgGTGACAACCTTCTGACTTCAAGATTGGTCTCAAGATTGTTTGTGG
ATAAGTCTATGGACAATGTTTTGTAAGAAATTCTTGTATATATTTTCTCT
TCTAAGGTATTTTTGATACATCTCTAAGGACATTTATCCAAGGTTGTACA
TACTTTGTGGACTTGTCTAGTGAAGACTTTCTTGTACATTTTTACACTTC
GACTATCTCGACTAACATAGGCCTATGTATGtaaatttgtaaagtttttc
atgtattttttctATTGCGTTTTTAGCTTGAATATCTCTATACAGATGAA
AATTCCAAGACCTTTGTCATTCATTATCCCAAACAGTTTGCTTCTGC
Run BLAST on NCBI

transcript from alignment at sc0000273:56087..56883+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017663 ID=TCONS_00017663|Name=TCONS_00017663|organism=Clytia hemisphaerica|type=transcript|length=797bp|location=Sequence derived from alignment at sc0000273:56087..56883+ (Clytia hemisphaerica)
ataactccTTGTATTTAACTTGTATTTATAACTTGTATTTATCAAGAAAA
ATCATTCGTATTTTTAAGGAATATCATTCTTTTATTGTTCAAGGGAAATA
ATTGTCCTTTCCAAGAAAAAcattatattttcaaaagaaaactttattca
tgtattttatatattattttacaaggaaaataaaaaaaactacttgCGAA
TCTATGATGATAGTATCAAGAATTATAGACTAAAAATCAAATGGTCTCTT
TGTGACAGTTGTTTGATTGGTGTTGGTGCTCCCTCGGGAGATAATTAGTT
TTTAATGATAATTTACAAACCAAATCGCCACGTTTTTTGAgaggtttttt
ctcattttacaTTTGAAAGTATTCTCATGAAGTCATGTCTATGAGAGAGA
AGGAGTGATTTTTTATGTCTTGGAATCATCTCATGTCaagtttattttct
tcttgGTGACAACCTTCTGACTTCAAGATTGGTCTCAAGATTGTTTGTGG
ATAAGTCTATGGACAATGTTTTGTAAGAAATTCTTGTATATATTTTCTCT
TCTAAGGTATTTTTGATACATCTCTAAGGACATTTATCCAAGGTTGTACA
TACTTTGTGGACTTGTCTAGTGAAGACTTTCTTGTACATTTTTACACTTC
GACTATCTCGACTAACATAGGCCTATGTATGtaaatttgtaaagtttttc
atgtattttttctATTGCGTTTTTAGCTTGAATATCTCTATACAGATGAA
AATTCCAAGACCTTTGTCATTCATTATCCCAAACAGTTTGCTTCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009878XLOC_009878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017663-exon-sc0000273-1491911889:56087..56883TCONS_00017663-exon-sc0000273-1491911889:56087..56883Clytia hemisphaericaexon
TCONS_00017663-exon-sc0000273-1510915933:56087..56883TCONS_00017663-exon-sc0000273-1510915933:56087..56883Clytia hemisphaericaexon
TCONS_00017663-exon-sc0000273-1575043694:56087..56883TCONS_00017663-exon-sc0000273-1575043694:56087..56883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:56087..56883 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.0273	2.11815	2.04948	1.60407	2.34337	0.308627	2.23407	1.56863	2.44052	1.05804	0.672416	1.06085	1.18428	0.600093	0.822263	1.14714	1.63059	2.56267	1.07753	1.12756	5.04028	3.96549	3.8741	3.27054	0	0.555024	0.595678	0.211908	0.642898	0.614074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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