TCONS_00017650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017650
Unique NameTCONS_00017650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017650 ID=TCONS_00017650|Name=TCONS_00017650|organism=Clytia hemisphaerica|type=transcript|length=510bp
GTTGCCTTTAATGACGTTCCAGGTGTAAATTATTTGATAGCGCTCTCTCC
GTCTTTCAAGGCTATACAATTTAAATGATTTTAGTTTTTCCCAATAATTA
AGATGTCTGAGGGATGGAATTCCATGTAAAAACGATTTCTAAACTTCTTC
CAGTTGCTGGAAAATGTTGGACAGAAAATTATTACAAGATTATGTGAAGG
GTTGTGTAGAAGTTATCTGGGTTTCTCACCAACAGTATAAATGAGAAGAT
TCAGAGAAGGGCTTTAGCAAAAGCGTATgcctattgtttaaatgacgtaT
ATTCCTACTGTTCTTTGCATACAAGGGATATGGGTTGGCAAAATCTGGAC
AATTTtagcgtacgtactatgtggaccaCCCCATATCCCAAAGCTTCTGT
GGATTGCGTCATCTCACTCTTTTgtcaaacaaaataatttttcttgtcTA
CACTGCTTAAGGCTGGATAACTAATACTGTAGTAGTAATCAGTTATTCAA
TAGATTGTTG
Run BLAST on NCBI

transcript from alignment at sc0000271:159526..160035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017650 ID=TCONS_00017650|Name=TCONS_00017650|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0000271:159526..160035 (Clytia hemisphaerica)
CAACAATCTATTGAATAACTGATTACTACTACAGTATTAGTTATCCAGCC
TTAAGCAGTGTAgacaagaaaaattattttgtttgacAAAAGAGTGAGAT
GACGCAATCCACAGAAGCTTTGGGATATGGGGtggtccacatagtacgta
cgctaAAATTGTCCAGATTTTGCCAACCCATATCCCTTGTATGCAAAGAA
CAGTAGGAATAtacgtcatttaaacaataggcATACGCTTTTGCTAAAGC
CCTTCTCTGAATCTTCTCATTTATACTGTTGGTGAGAAACCCAGATAACT
TCTACACAACCCTTCACATAATCTTGTAATAATTTTCTGTCCAACATTTT
CCAGCAACTGGAAGAAGTTTAGAAATCGTTTTTACATGGAATTCCATCCC
TCAGACATCTTAATTATTGGGAAAAACTAAAATCATTTAAATTGTATAGC
CTTGAAAGACGGAGAGAGCGCTATCAAATAATTTACACCTGGAACGTCAT
TAAAGGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009867XLOC_009867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017650-exon-sc0000271-1491911889:159526..160035TCONS_00017650-exon-sc0000271-1491911889:159526..160035Clytia hemisphaericaexon
TCONS_00017650-exon-sc0000271-1510915933:159526..160035TCONS_00017650-exon-sc0000271-1510915933:159526..160035Clytia hemisphaericaexon
TCONS_00017650-exon-sc0000271-1575043694:159526..160035TCONS_00017650-exon-sc0000271-1575043694:159526..160035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:159526..160035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.353599	0.689629	0.800725	1.31097	0	0.376811	0.454607	0.425598	0	0.123028	0	0.0784983	0.156778	0.407611	0.0669284	0	0.0884818	0.0906909	0.375883	0.262223	0	0.333514	0	0.122865	0	0.790586	0.161618	0	0.392467	0.133287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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