TCONS_00017645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017645
Unique NameTCONS_00017645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017645 ID=TCONS_00017645|Name=TCONS_00017645|organism=Clytia hemisphaerica|type=transcript|length=827bp
CTGGGTTTCATGTGTTATCATCTTTTACCCTTTGTTTTTAACTGGGGTTT
TTAACTATCCACCCATGGGTTCATTTGTCAAGTCGGGCAGTTGTTTTTCA
CCTCATTTGTTCTCCCTTCTTTAATCCCTGTTGATATCCAATGGTGTTGG
TTGATACATTGGTAATTATTTCAGCTTGTAAATGCACCTTTGGGAAATCT
ACTGGTTGGATAGCCCTGGGTTTGAGTGTTATGTTTCACCTTTTGTTTTT
AACTGGGTTTCTCACTATCCACCCATAAGTTCACTTAAGTTAGGCATTTG
TTTTTCACCCCTCTTTTCTTCATCCTATCATTCCTGTTGACGTCCAATGA
CGTCATGACACATTGGTAATTATTTAGCCTTTGAACTTTTGGAGACCTAC
TGGTTGGATAGCCCTGGGTTTCTGTGTTGTCatgttttacttttgttttt
aactgGGATTCTAACTACCCACCGAAGAGTTCACCTGTAAGTTGGACAGT
TGTTTTTCACCCTTCTTTTCTTCATCCTATCACTCATGCCGACGTCCAAT
GACGTCATGATACATTGGTAACTACTTAGCCTATGAACTTTTGGGAACCC
ACTGATTGGATAGCCCTGGGTTTCTGTGTTGTCATGTattacttttgttt
ttaactgGGTTTCTAACTATCCACCCAAGAGTTCACCTGTAAGTTGGACA
GTTGTTTTTCACCCTTCTTTTTTCATCCTATCACTCATGCCGACGTCCAA
TGACGTCATGATACATTGGTAACTACTTAGCCTATGAACTTTTGGGAACC
CACTGATTGGATAGCCCTGGGTCTGTG
Run BLAST on NCBI

transcript from alignment at sc0000271:85299..86125

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017645 ID=TCONS_00017645|Name=TCONS_00017645|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at sc0000271:85299..86125 (Clytia hemisphaerica)
CACAGACCCAGGGCTATCCAATCAGTGGGTTCCCAAAAGTTCATAGGCTA
AGTAGTTACCAATGTATCATGACGTCATTGGACGTCGGCATGAGTGATAG
GATGAAAAAAGAAGGGTGAAAAACAACTGTCCAACTTACAGGTGAACTCT
TGGGTGGATAGTTAGAAACCcagttaaaaacaaaagtaatACATGACAAC
ACAGAAACCCAGGGCTATCCAATCAGTGGGTTCCCAAAAGTTCATAGGCT
AAGTAGTTACCAATGTATCATGACGTCATTGGACGTCGGCATGAGTGATA
GGATGAAGAAAAGAAGGGTGAAAAACAACTGTCCAACTTACAGGTGAACT
CTTCGGTGGGTAGTTAGAATCCcagttaaaaacaaaagtaaaacatGACA
ACACAGAAACCCAGGGCTATCCAACCAGTAGGTCTCCAAAAGTTCAAAGG
CTAAATAATTACCAATGTGTCATGACGTCATTGGACGTCAACAGGAATGA
TAGGATGAAGAAAAGAGGGGTGAAAAACAAATGCCTAACTTAAGTGAACT
TATGGGTGGATAGTGAGAAACCCAGTTAAAAACAAAAGGTGAAACATAAC
ACTCAAACCCAGGGCTATCCAACCAGTAGATTTCCCAAAGGTGCATTTAC
AAGCTGAAATAATTACCAATGTATCAACCAACACCATTGGATATCAACAG
GGATTAAAGAAGGGAGAACAAATGAGGTGAAAAACAACTGCCCGACTTGA
CAAATGAACCCATGGGTGGATAGTTAAAAACCCCAGTTAAAAACAAAGGG
TAAAAGATGATAACACATGAAACCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009862XLOC_009862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017645-exon-sc0000271-1491911889:85299..86125TCONS_00017645-exon-sc0000271-1491911889:85299..86125Clytia hemisphaericaexon
TCONS_00017645-exon-sc0000271-1510915933:85299..86125TCONS_00017645-exon-sc0000271-1510915933:85299..86125Clytia hemisphaericaexon
TCONS_00017645-exon-sc0000271-1575043694:85299..86125TCONS_00017645-exon-sc0000271-1575043694:85299..86125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:85299..86125 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344343	0.599612	0.403275	0.348538	1.26418	1.24416	1.00737	1.67774	1.14271	0.994273	0.177771	0.305535	0.155228	0.560012	0.550052	0.78868	0.841969	1.11057	0.0810104	0.388799	0.278743	0.594575	0.0825684	0.359505	0.332399	0.571271	0.303843	0.463913	0.24543	0.262289
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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