TCONS_00017641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017641
Unique NameTCONS_00017641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017641 ID=TCONS_00017641|Name=TCONS_00017641|organism=Clytia hemisphaerica|type=transcript|length=1670bp
CTATTATTGGTCCTGTTCTGGTTTTAATTAATTATAGGCATAAAATATAT
ACGATTCTAAtattgaaattgttcttatcttaAAAAAGTGTGTAACCTGA
AAATTCCCCAAAGGATTGCACCAATTCACTAAAGAATCATTATATCAACA
ATCAGCGCAATCAAAAGTCATTAAACATTTATTTCGTTCCTGTAAAAGTC
CCATTTCATGTAattaatcaaaacaacaaaaagagtCATTAATTAAAGTA
TTCCCTTGATACGCAACTGGAGTTACCTTACGAACTAAAAGTtgcaaaaa
tgatcaaatacaAAATTTGGTCTTTGAAAAGTGGAGAACATTTataaaga
catttttttaaggAAAGACAAGACATCAATAACAGTAGACAAGATGTTTC
ATGAAAAGCGAACATGACGataaaagttgatattattttAAGAAGAtaca
aagaagaagaagatgaagacaACAACCAAACAACAACAATCATCAATAAA
CATGAAGAAGATTTCACTACACTCAAAACACTCGGTTCAGGTGGTTTTGG
GACTTGCTACAAAGCTATATACAAAAAGACACAATTTGTATGCTGCATTA
AGAAAATAAACCGTACTTCGAAGAAAAATGCCGCCCTGCAAAGTTACAAT
GCTGAGACGAAGTCAGAATTCTTTGATTTTGAGCATCAAAACATTGTCAA
ACTTATTGCAGCAACTTCAAtagattttaacagttttgacaaagatttaa
gtagtcttttaatggtttttgagTATGTTCCGGGTCAAAATTTACATCAA
CTATTGGAAGACGAACAAGAAATTATTGATCTCCCGCGCATGTGCAGATT
CGGACAGGACATTGCTTCAGCTTTAGATTACGTTCATCAGAAAGGGATCA
TCCATTTGGACGTCAAACCTTCCAATATAATGGTCACCTCTACAGATGTT
TGTAAGCTTGCAGATTTTGGCTGCTCACAGTACTTGGAAAGCGATCCAGT
ACAGTCAGAATCTTTGCTAACTGGAACGTTCGCATATAGAGCACCGGAGC
TGCATCGGGGTTTATCACCCACGCCAGAGTGCGATGTTTACGCCGTAGGA
ATTTGCTTGTGGCAATTTTGGAGTCGAGAGATGCCATTTGGTGGAACCAA
CCAACATGTTGTAATATATAATGtggttcaaaataatttacGACCTGATT
TTGAGCTTGACCATATCGACACCCCGAACGAGACTTATAAAGAACTTGCA
ACCCAATGCTGGTCCAATGAACCATTTAATCGACCTACACTTTGTACTGT
TATCGAGACTCTAAGCTCATTATCGTCTTAATTATATCTTGTTTTGTTCT
TACTTTGCTGTTTGAAAATTAATTAGTCTAATTATATATTTTATTAAGAG
ATATAAAATCAAAGTATAAAAATTATAtcttcattatatttgtattaTAG
ATTTGTTACAtattataaattttaaattattatttttcgtAATGGTATTA
CATAGAGATTTTATATTATGCATTTTCAgaatattatttgaaaaattatc
tagataaaaaattatttgattttaacagttttgtttTCCCATACAGTGTT
TcgtttttcaagtaaaaatgtcAATATTTGGTTTTTATCTATGGGATCTA
TTTTTTCCACTGACTTTCCC
Run BLAST on NCBI

protein sequence of protein kinase Mos1

>TCONS_00017641-protein ID=TCONS_00017641-protein|Name=protein kinase Mos1|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MTIKVDIILRRYKEEEDEDNNQTTTIINKHEEDFTTLKTLGSGGFGTCYK
AIYKKTQFVCCIKKINRTSKKNAALQSYNAETKSEFFDFEHQNIVKLIAA
TSIDFNSFDKDLSSLLMVFEYVPGQNLHQLLEDEQEIIDLPRMCRFGQDI
ASALDYVHQKGIIHLDVKPSNIMVTSTDVCKLADFGCSQYLESDPVQSES
LLTGTFAYRAPELHRGLSPTPECDVYAVGICLWQFWSREMPFGGTNQHVV
IYNVVQNNLRPDFELDHIDTPNETYKELATQCWSNEPFNRPTLCTVIETL
SSLSS
Run BLAST on NCBI

transcript from alignment at sc0000271:362370..364558-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017641 ID=TCONS_00017641|Name=TCONS_00017641|organism=Clytia hemisphaerica|type=transcript|length=2189bp|location=Sequence derived from alignment at sc0000271:362370..364558- (Clytia hemisphaerica)
CTATTATTGGTCCTGTTCTGGTTTTAATTAATTATAGGCATAAAATATAT
ACGATTCTAATATTGAAATTGTTCTTATCTTAAAAAAGTGTGTAACCTGA
AAATTCCCCAAAGGATTGCACCAATTCACTAAAGAATCATTATATCAACA
ATCAGCGCAATCAAAAGTCATTAAACATTTATTTCGTTCCTGTAAAAGTC
CCATTTCATGTAATTAATCAAAACAACAAAAAGAGTCATTAATTAAAGTA
TTCCCTTGATACGCAACTGGAGTTACCTTACGAACTAAAAGTTGCAAAAA
TGATCAAATACAAAATTTGGTCTTTGAAAAGTGGAGAACATTTATAAAGA
CATTTTTTTAAGGAAAGACAAGACATCAATAACAGTAGACAAGATGTTTC
ATGAAAAGCGAACATGACGATAAAAGTTGATATTATTTTAAGAAGATACA
AAGAAGAAGAAGATGAAGACAACAACCAAACAACAACAATCATCAATAAA
CATGAAGAAGATTTCACTACACTCAAAACACTCGGTTCAGGTGGTTTTGG
GACTTGCTACAAAGCTATATACAAAAAGACACAATTTGTATGCTGCATTA
AGAAAATAAACCGTACTTCGAAGAAAAATGCCGCCCTGCAAAGTTACAAT
GCTGAGACGAAGTCAGAATTCTTTGATTTTGAGCATCAAAACATTGTCAA
ACTTATTGCAGCAACTTCAATAGATTTTAACAGTTTTGACAAAGATTTAA
GTAGTCTTTTAATGGTTTTTGAGTATGTTCCGGGTCAAAATTTACATCAA
CTATTGGAAGACGAACAAGAAATTATTGATCTCCCGCGCATGTGCAGATT
CGGACAGGACATTGCTTCAGCTTTAGATTACGTTCATCAGAAAGGGATCA
TCCATTTGGACGTCAAACCTTCCAATATAATGGTCACCTCTACAGATGTT
TGTAAGCTTGCAGATTTTGGCTGCTCACAGTACTTGGAAAGCGATCCAGT
ACAGTCAGAATCTTTGCTAACTGGAACGTTCGCATATAGAGCACCGGAGC
TGCATCGGGGTTTATCACCCACGCCAGAGTGCGATGTTTACGCCGTAGGT
AAGATATTTTCCGTTTCTTTCAGTCATAGACCTGGTAAATCTTGCATGAA
ATTCCAGTGTTATTTTCCATACGAGATGATTTTTGACCGATTTTTCCAAA
GGTTGAAGAGCGGACTGGGTTAGTGCCACGGGGATCTACAAAAGATCGAG
GCAAAGTATAGCTGACAAAAAAGGTTTTTCCTGAAAGGACAGTCTAGATA
TTCTTAACTTTTGGAGAAAATAATCACAAAAAATTCTTGCGGACGGTATT
CTTAAAGTTAGAATCCAAATTCAACCTGTAATACACACCTGAAGCATAAA
TGGCATTTTTGTGAAAGTATTAAGCTTTGCTGGGTGATAACTGACAATTA
ACAATTAAGAAGTTCTTTCGAATTCCATGATGGTGTTATTTTTAGCGTAT
TCTAAATATTTTTAGTCAATTTCATTATCAATATTCTTATAAAGTATATT
CTTAAAAAAAAGTGTCTAGTTGTGATTGTTGTTTTACATCTTAAAAATCG
AATTTTTTCTATCTTAGGAATTTGCTTGTGGCAATTTTGGAGTCGAGAGA
TGCCATTTGGTGGAACCAACCAACATGTTGTAATATATAATGTGGTTCAA
AATAATTTACGACCTGATTTTGAGCTTGACCATATCGACACCCCGAACGA
GACTTATAAAGAACTTGCAACCCAATGCTGGTCCAATGAACCATTTAATC
GACCTACACTTTGTACTGTTATCGAGACTCTAAGCTCATTATCGTCTTAA
TTATATCTTGTTTTGTTCTTACTTTGCTGTTTGAAAATTAATTAGTCTAA
TTATATATTTTATTAAGAGATATAAAATCAAAGTATAAAAATTATATCTT
CATTATATTTGTATTATAGATTTGTTACATATTATAAATTTTAAATTATT
ATTTTTCGTAATGGTATTACATAGAGATTTTATATTATGCATTTTCAGAA
TATTATTTGAAAAATTATCTAGATAAAAAATTATTTGATTTTAACAGTTT
TGTTTTCCCATACAGTGTTTCGTTTTTCAAGTAAAAATGTCAATATTTGG
TTTTTATCTATGGGATCTATTTTTTCCACTGACTTTCCC

Coding sequence (CDS) from alignment at sc0000271:362370..364558-

>TCONS_00017641 ID=TCONS_00017641|Name=TCONS_00017641|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000271:362370..364558- (Clytia hemisphaerica)
GAATTTGCTTGTGGCAATTTTGGAGTCGAGAGATGCCATTTGGTGGAACC
AACCAACATGTTGTAATATATAATGTGGTTCAAAATAATTTACGACCTGA
TTTTGAGCTTGACCATATCGACACCCCGAACGAGACTTATAAAGAACTTG
CAACCCAATGCTGGTCCAATGAACCATTTAATCGACCTACACTTTGTACT
GTTATCGAGACTCTAAGCTCATTATCGTCTTAAATGACGATAAAAGTTGA
TATTATTTTAAGAAGATACAAAGAAGAAGAAGATGAAGACAACAACCAAA
CAACAACAATCATCAATAAACATGAAGAAGATTTCACTACACTCAAAACA
CTCGGTTCAGGTGGTTTTGGGACTTGCTACAAAGCTATATACAAAAAGAC
ACAATTTGTATGCTGCATTAAGAAAATAAACCGTACTTCGAAGAAAAATG
CCGCCCTGCAAAGTTACAATGCTGAGACGAAGTCAGAATTCTTTGATTTT
GAGCATCAAAACATTGTCAAACTTATTGCAGCAACTTCAATAGATTTTAA
CAGTTTTGACAAAGATTTAAGTAGTCTTTTAATGGTTTTTGAGTATGTTC
CGGGTCAAAATTTACATCAACTATTGGAAGACGAACAAGAAATTATTGAT
CTCCCGCGCATGTGCAGATTCGGACAGGACATTGCTTCAGCTTTAGATTA
CGTTCATCAGAAAGGGATCATCCATTTGGACGTCAAACCTTCCAATATAA
TGGTCACCTCTACAGATGTTTGTAAGCTTGCAGATTTTGGCTGCTCACAG
TACTTGGAAAGCGATCCAGTACAGTCAGAATCTTTGCTAACTGGAACGTT
CGCATATAGAGCACCGGAGCTGCATCGGGGTTTATCACCCACGCCAGAGT
GCGATGTTTACGCCGTAGGAATTTGCTTGTGGCAATTTTGGAGTCGAGAG
ATGCCATTTGGTGGAACCAACCAACATGTTGTAATATATAATGTGGTTCA
AAATAATTTACGACCTGATTTTGAGCTTGACCATATCGACACCCCGAACG
AGACTTATAAAGAACTTGCAACCCAATGCTGGTCCAATGAACCATTTAAT
CGACCTACACTTTGTACTGTTATCGAGACTCTAAGCTCATTATCGTCTTA
AATGACGATAAAAGTTGATATTATTTTAAGAAGATACAAAGAAGAAGAAG
ATGAAGACAACAACCAAACAACAACAATCATCAATAAACATGAAGAAGAT
TTCACTACACTCAAAACACTCGGTTCAGGTGGTTTTGGGACTTGCTACAA
AGCTATATACAAAAAGACACAATTTGTATGCTGCATTAAGAAAATAAACC
GTACTTCGAAGAAAAATGCCGCCCTGCAAAGTTACAATGCTGAGACGAAG
TCAGAATTCTTTGATTTTGAGCATCAAAACATTGTCAAACTTATTGCAGC
AACTTCAATAGATTTTAACAGTTTTGACAAAGATTTAAGTAGTCTTTTAA
TGGTTTTTGAGTATGTTCCGGGTCAAAATTTACATCAACTATTGGAAGAC
GAACAAGAAATTATTGATCTCCCGCGCATGTGCAGATTCGGACAGGACAT
TGCTTCAGCTTTAGATTACGTTCATCAGAAAGGGATCATCCATTTGGACG
TCAAACCTTCCAATATAATGGTCACCTCTACAGATGTTTGTAAGCTTGCA
GATTTTGGCTGCTCACAGTACTTGGAAAGCGATCCAGTACAGTCAGAATC
TTTGCTAACTGGAACGTTCGCATATAGAGCACCGGAGCTGCATCGGGGTT
TATCACCCACGCCAGAGTGCGATGTTTACGCCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009859XLOC_009859Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
protein kinase Mos1TCONS_00017641-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017641-exon-sc0000271-1575043694:363461..364558TCONS_00017641-exon-sc0000271-1575043694:363461..364558Clytia hemisphaericaexon
TCONS_00017641-exon-sc0000271-1575043694:362370..362941TCONS_00017641-exon-sc0000271-1575043694:362370..362941Clytia hemisphaericaexon
TCONS_00017641-exon-sc0000271-1510915933:363461..364558TCONS_00017641-exon-sc0000271-1510915933:363461..364558Clytia hemisphaericaexon
TCONS_00017641-exon-sc0000271-1510915933:362370..362941TCONS_00017641-exon-sc0000271-1510915933:362370..362941Clytia hemisphaericaexon
TCONS_00017641-exon-sc0000271-1491911889:363461..364558TCONS_00017641-exon-sc0000271-1491911889:363461..364558Clytia hemisphaericaexon
TCONS_00017641-exon-sc0000271-1491911889:362370..362941TCONS_00017641-exon-sc0000271-1491911889:362370..362941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:362370..364558 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6229	11.9347	134.806	155.666	0.0327472	0.0776319	0.156099	0.204594	0.368334	0.608321	0	0.161725	0.30685	0.587017	0.261987	0.207165	0.0182293	0.0747378	0.542085	0.729325	0.258262	0.206135	21.3553	18.9341	0.130359	0.186148	0.998912	1.31481	12.7755	13.5105
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00017641 vs. Swiss-Prot (Human)
Match: MOS (Proto-oncogene serine/threonine-protein kinase mos OS=Homo sapiens GN=MOS PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.441e-40
Identity = 94/283 (33.22%), Postives = 152/283 (53.71%), Query Frame = 3 
Query:  507 EDFTTLKTLGSGGFGTCYKAIYKKTQFVCCIKKINRTSKKN-AALQSYNAETKSEFFDFEHQNIVKLIAATSIDFNSFDKDLSSLLMVFEYVPGQN--LHQLL--------EDEQEI-------IDLPRMCRFGQDIASALDYVHQKGIIHLDVKPSNIMVTSTDVCKLADFGCSQYLESDPV-QSESL-LTGTFAYRAPELHRGLSPTPECDVYAVGICLWQFWSREMPFGGTNQHVVIYNVVQNNLRPDFELDHID--TPNETYKELATQCWSNEPFNRPT 1289
            E    L+ LG+GGFG+ YKA Y+       IK++N+ +K   A+ +S+ AE         H NIV+++AA S    +    L +++M F    G N  LHQ++         D  E        + L +  ++  D+ + L ++H + I+HLD+KP+NI+++  DVCK++DFGCS+ LE     Q+ S  L GT+ +RAPEL +G   TP+ D+Y+  I LWQ  +++ P+ G  QH ++Y VV  +LRP       +   P +   ++  +CW      RP+
Sbjct:   58 EQVCLLQRLGAGGFGSVYKATYRGVPVA--IKQVNKCTKNRLASRRSFWAEL--NVARLRHDNIVRVVAA-STRTPAGSNSLGTIIMEF----GGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLKYSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYPLGGTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQH-ILYAVVAYDLRPSLSAAVFEDSLPGQRLGDVIQRCWRPSAAQRPS 330
The following BLAST results are available for this feature:
BLAST of TCONS_00017641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MOS2.441e-4033.22Proto-oncogene serine/threonine-protein kinase mos... [more]
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