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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017634 ID=TCONS_00017634|Name=TCONS_00017634|organism=Clytia hemisphaerica|type=transcript|length=3475bpRun BLAST on NCBI protein sequence of TCONS_00017634-protein >TCONS_00017634-protein ID=TCONS_00017634-protein|Name=TCONS_00017634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp MLNLVVQRCSLIILLGSFVDSTLLCECRKATNQTSIPYNFNCQELNGCYARun BLAST on NCBI transcript from alignment at sc0000271:147120..167420- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017634 ID=TCONS_00017634|Name=TCONS_00017634|organism=Clytia hemisphaerica|type=transcript|length=20301bp|location=Sequence derived from alignment at sc0000271:147120..167420- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000271:147120..167420- >TCONS_00017634 ID=TCONS_00017634|Name=TCONS_00017634|organism=Clytia hemisphaerica|type=CDS|length=16500bp|location=Sequence derived from alignment at sc0000271:147120..167420- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017634 vs. Swiss-Prot (Human)
Match: BMR1B (Bone morphogenetic protein receptor type-1B OS=Homo sapiens GN=BMPR1B PE=1 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 4.876e-82 Identity = 140/307 (45.60%), Postives = 196/307 (63.84%), Query Frame = 3
Query: 1155 LNQRTLSWQIILQGIVGSGGFGTVQVGYWNGQKVAVKIIDSNEQESWEQEKDLYLTKLLNHENILGFIGADVKEDAYEIQRWLVFDYHPNGSVYDFLQTNTLNIPQMLMMVSGVLDGLYHLHLELKTSNISKPAIAHRDMKTKNILVKLDGTCCLADFGLAHKRLPNQNSTGDVPPQKVYVGTSRYQAPELLANKIDGNRFEQFKMTDIYSLALCLWEFCWRTCVDDEIPVHEYELPYKDDVPSNPSATDMKPVVCTEGRRPPIPPHWENDETMKKLSKMIGYCWLANPDERLRISRVRKQVHTLKD 2075
L QRT++ QI + +G G +G V +G W G+KVAVK+ + E+ SW +E ++Y T L+ HENILGFI AD+K Q +L+ DYH NGS+YD+L++ TL+ ML + + GL HLH E+ ++ KPAIAHRD+K+KNILVK +GTCC+AD GLA K + + N D+PP VGT RY PE+L ++ N F+ + M D+YS L LWE R CV I V EY+LPY D VPS+PS DM+ +VC + RP P W +DE ++++ K++ CW NP RL RV+K + + +
Sbjct: 195 LVQRTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQ-GKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEV-DIPPN-TRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVA-RRCVSGGI-VEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSE 496 The following BLAST results are available for this feature:
BLAST of TCONS_00017634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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