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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017632 ID=TCONS_00017632|Name=TCONS_00017632|organism=Clytia hemisphaerica|type=transcript|length=1810bpRun BLAST on NCBI protein sequence of TCONS_00017632-protein >TCONS_00017632-protein ID=TCONS_00017632-protein|Name=TCONS_00017632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp RTKNGRRAVIAHLKNQNRTHFAVIFLFWHTNSNLLILIMVGSSSEESAKLRun BLAST on NCBI transcript from alignment at sc0000271:129542..136589- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017632 ID=TCONS_00017632|Name=TCONS_00017632|organism=Clytia hemisphaerica|type=transcript|length=7048bp|location=Sequence derived from alignment at sc0000271:129542..136589- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000271:129542..136589- >TCONS_00017632 ID=TCONS_00017632|Name=TCONS_00017632|organism=Clytia hemisphaerica|type=CDS|length=11340bp|location=Sequence derived from alignment at sc0000271:129542..136589- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017632 vs. Swiss-Prot (Human)
Match: SAE1 (SUMO-activating enzyme subunit 1 OS=Homo sapiens GN=SAE1 PE=1 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 2.464e-95 Identity = 145/340 (42.65%), Postives = 226/340 (66.47%), Query Frame = 2
Query: 134 EESAKLTAEEAAVYDRQIRLWGVEAQQRLRKARILLVGMSSLGNEVCKNILLAGIKHLTILDDKTLTEKDFEQQFFSGQEDVGKNRAEASLARSNDLNPMVDIVADRENVKEKNEEFYKNFDVVCICDCPVETQIKVNEICHRLGIKFLCGQVYGYYGYMFQDLGCHKYMEEVVKKAEIKKNAEDHDGPSXXXXXXXXXXXXXXXXXLSEFCTLGEALKVSVFENIKSERQAKQVSKTYLVMKVLMEYEKQFGELPQNMESNSKLQQLLDVRSEVFDQMNIDGEFLPDDFASFCVGQLFPVCPIVGGVMSQEIIKAVSGKDAPHNNFFFYDGVSTSGVVQ 1153
E ++ EEAA YDRQIRLWG+EAQ+RLR +R+LLVG+ LG E+ KN++LAG+K LT+LD + +T +D QF VG+NRAEASL R+ +LNPMVD+ D E++++K E F+ FD VC+ C + +KV++ICH+ IKF G V+GY+GY F +LG H+++EE K A++ + E DGP ++ K T ++K+ FC + EAL+V + + K++ K+ + Y +++VL+++ G P + + LL +R++V D + I + LP+DF +C ++ PVC +VGG+++QEI+KA+S +D PHNNFFF+DG+ +G+V+
Sbjct: 6 EAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVE--DGPDTKRAKLDSSETTMVKKKVV-FCPVKEALEVD-WSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVE 341 The following BLAST results are available for this feature:
BLAST of TCONS_00017632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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