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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017614 ID=TCONS_00017614|Name=TCONS_00017614|organism=Clytia hemisphaerica|type=transcript|length=1057bpRun BLAST on NCBI protein sequence of TCONS_00017614-protein >TCONS_00017614-protein ID=TCONS_00017614-protein|Name=TCONS_00017614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp MDAINDKLNSYVIGGKYGFEFIPMEEIAKSLGVSAVGLRFMCGILVGYPFRun BLAST on NCBI transcript from alignment at sc0000271:248332..261003+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017614 ID=TCONS_00017614|Name=TCONS_00017614|organism=Clytia hemisphaerica|type=transcript|length=12672bp|location=Sequence derived from alignment at sc0000271:248332..261003+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000271:248332..261003+ >TCONS_00017614 ID=TCONS_00017614|Name=TCONS_00017614|organism=Clytia hemisphaerica|type=CDS|length=11844bp|location=Sequence derived from alignment at sc0000271:248332..261003+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017614 vs. Swiss-Prot (Human)
Match: MBOA5 (Lysophospholipid acyltransferase 5 OS=Homo sapiens GN=LPCAT3 PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 3.535e-51 Identity = 113/300 (37.67%), Postives = 160/300 (53.33%), Query Frame = 3
Query: 120 GFEFIPMEEIAKSLGVSAVGLRFMCGILVGYPFALIY--LLFPKSAYNRKHXXXXXXXXXXXXXXXXADCIYNLFSIFMSYVSFSLLGPSISNVIFNFLFHTTFLFVGYVVNATENYDVKWTTPQCILCLRLIGLAWDVYDGHQPEETLSEEQKYFRITKKPSFMEMFGFSYCFCGCLSGPQFSFQRYIRFTTNTLVDADIQDKQSGRFAASFKRFLSGLLVVALFTVFDSSYRSDMLLTSKVLNKPFLEKVLLMGIIYYVQFAKYVFVWWFAESICMLIGLSYDGKDSHGNAKWEGLNN 1013
GF+ + + ++A SLG S LR + I +GYPFAL Y LF K Y H + T TG++I YF FG ++L I + ++ L+G +I+ V+ F F +L GY AT NYD+KWT P C+L L+LIGLA D +DG + + +LS EQ+ + I PS +E+ GFSY + L GPQFS Y++ L+ DI K + KR GL + +T+ D LLT N PF + + M I KYV W E +C+L GL ++G + G AKW+ N
Sbjct: 22 GFQELSLNKLATSLGASEQALRLIISIFLGYPFALFYRHYLFYKETY-LIHLFHTFTGLSIAYFNFGNQLYHSLLCIVLQFLILRLMGRTITAVLTTFCFQMAYLLAGYYYTATGNYDIKWTMPHCVLTLKLIGLAVDYFDGGKDQNSLSSEQQKYAIRGVPSLLEVAGFSYFYGAFLVGPQFSMNHYMKLVQGELI--DIPGKIPNSIIPALKRLSLGLFYLVGYTLLSPHITEDYLLTEDYDNHPFWFRCMYMLIWGKFVLYKYVTCWLVTEGVCILTGLGFNGFEEKGKAKWDACAN 318 The following BLAST results are available for this feature:
BLAST of TCONS_00017614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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