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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017586 ID=TCONS_00017586|Name=TCONS_00017586|organism=Clytia hemisphaerica|type=transcript|length=1803bp
ATTCTATACCAAAGTGAATAGAACTTGTGATTGTGAAACGAGATAAGCAA
GTGTGCTTTGTTCGTGTTGAGGAGCTTTCAGTGATGTAAAACGTCGTATT
GCCTTTAGTatgaaaatttgattgatttcTCTGGCATGTTTCTACGGATT
TCAACATGTATTTGCAACAAGATGTCGAATCAAACAGCTATTCAGTGGAT
AATTTGGACAAATTCAAACGGACAGATCACCGAGCAAAAACAAGATGTTT
TGTGCTTTTCGCTCTCTTGTTTACCATTTATCAAATCTCGTGTTTTTCGA
ATGGCTGGTTGATCAATGGAGATGAATATTTGGGTTTGTGGCAACTTTGT
TCAGAAAGTGTTGGATGTTTGTGGATGGAACAAAGCCCTTCCTACGATGT
TCCCTTCTTGGATTGGTTTTCAACGGTTCGCGCTTTCCTTCTTCTAACGT
CAATTTTCACCATATTCGCGATGGCTTTTCAAATCGCAAATATTTATTGT
GATCAGACCATCTCGATGTTCCCTGTTCGTGTTTGCGCTATTTTCAATGT
GTTATACCTCTTATTGAGTATTATCATCTTTCCAACGCACAAACCCAACA
ACTTTGATGACATCTGGCAACTGGGATGGTCCTATTACGTCACTTGTGTT
GCTTGCTTACTCAGCATACTTCAAGCTACTATCACTTTCCGTGTAGGCAG
GGAAAACAGGCCTAAAAAAATCTCACCACCGGGAATCTCCGGACCACCGA
TCGGCCGAATCCAAATTAACGACCCGACGTCGGCGGAAGGGGCCGTTGCA
CGTGACGATTGGACACTCGACGacaaaagtttcttcaataCAACAGAAGC
TGATCCCTTACCTGAGAAGAAGTCTCCCAGCTCCTTATCGAGTTATAGTG
GTGACAATAGTGGCTCTTCGAGTGGGCGTAGCAGTCGTTCGAGTAGCGTG
ACAAGCGGGAGTAGCTTTGTAAGTAGTGCTTCGAGTTACTCGAGTGACTC
AGAAAGTATTGGCAAAGAAAGTGATGATCGAATCGATTTGGTGTGAGTGA
TGACAATGGACAATTCTTAAACTTTAGTAATTAATGAAAGAAAGCGAGTT
AGTTTCGACTCACTTATATTTTTCTAGATTGAAATAAAGATGGGATCgag
gaagaaaaaaaaggaCTTTTCATCATCGATGACTATACCTGTAGAAtatt
ttttacagattttactTTAAACATATTTAGAATCCTTTAGAAGTCGTATG
AtggttaaactttttcattgcCAGTGAAACATTCTTATTGCCACCCTTTA
TAACGATAAGATAAAGTCATATCAACTTGTAAGACGGTTAGCCTCAAGGA
CATTGCGTGTTGTTTACGCATTTTTACGcagtaatgaaaatatttttcct
ggTATGCCCCGAATAAAACAGTGGAAAGATCTTGGAAATGCGCCAGGAAT
GTTTCCAGAGAAATTTGAAAGTCTAGCTATCCTACGGTAGCTTGGCACAG
TAACTGTAATATTGAAATATTAGAAGACTAATAACCTtttctcgggtgcc
taataaatgATATGTATTTTTATAAAGTTAAAGTATCTAGAGTATTCATT
ACTAAAGTTTATTTGGTCGTTATGTTCTATTTCATTCCCGGGGTGGGGGT
AATAGGTTTTCGAGATGACGGGTACATATACCGCCTGACTTTTGGCGGTG
GGGCTTTTTGAGGGACTAAAACTAACCCTTAAAGGGACTGAAATAGAGGA
AAAACCAGAATTGTCAAAGATTATATATGACCCTTATTGGGAGTATTTTG
GTT Run BLAST on NCBI transcript from alignment at sc0000271:55984..62898+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017586 ID=TCONS_00017586|Name=TCONS_00017586|organism=Clytia hemisphaerica|type=transcript|length=6915bp|location=Sequence derived from alignment at sc0000271:55984..62898+ (Clytia hemisphaerica)
ATTCTATACCAAAGTGAATAGAACTTGTGATTGTGAAACGAGATAAGCAA
GTGTGCTTTGTTCGTGTTGAGGAGCTTTCAGTGATGTAAAACGTCGTATT
GCCTTTAGTatgaaaatttgattgatttcTCTGGCATGTTTCTACGGATT
TCAACATGTATTTGCAACAAGGTAAAATTTCaacatagctgtcaactctc
ccgcattgCGCGGGAGACTCCCGCATTTCTCGACGCGCGTTTAAACCCTT
TATCTAAATCGGAATATTACGGAATTATTTGAAAAGTCATTGTCTAAATT
CGCCCGATTTTTCGATCCCGATTTCCCAATAATAATATCCTGATTTCGTG
AATTAGAAAGAATCGAATATCGCATTTTTATTCCTAATTTCCCGATTCCC
TGATTTTTTTCCTGACTGTTTTTTGAATCTGTTTCTACCGCATTCTAAAA
TTCTTTGGCTGACTTTTATCTCTTTTACATCGTACACCATTCATAATTAC
TTTCATCATTTGGAGTCTTACAAAGTGGCCAACCTTCCTTACATGTTTTG
CACtgagaaattttcatttccaattttttgtgaaatttatcACCCAAATA
GTCGCCGTCATGTTTTTCTGCgttttgcctttttttcttAGCATGATTAC
GTTCACGCTGCTGAGcttttattttctctttatttttctcataatattat
ttttgcttttgtttttgcACTTCTTTTGTCTTAGCTAAATATTcctgatg
tttttcttttcgcaaGTCCTTTGTTTTAACCAAATATTCTTTTCGCTTTT
GTTTTTGCACTTCTTTTGTCTTAGCTAAATATTcctgatgtttttctttt
cgcaaGTCCTTTGTTTTAACCAAATATTCTTTTCGCTTTTCTTTTTGCAA
GTTCTTTGTTTTAACTAAATAATCTTTTcgctcatttttatttttcttgt
aatattcttttttcttttcttttcgacATCTTTTGTCTTAGCTAAATATT
CCTTACGcttgtcttttgttttttcGTAATAATTCTtcttatcttcattt
ttttccctCTTTATAAATTTGCTTCTTAATGAATAGTCCTTTAAATCACC
TTTATCCATCTTTCTTTTTCTCAAAGTTCTAGCTATCTCAAAATGTACAA
GATTTGTTTGATCTGATATGATTTCTTTTACATAAATGCAAAAAAACCAT
CCACCCGTTTGAATCTCATAAAGTTGATGCAAGCTTTCATAGCGAAAAGT
TGTTTCATTTAAATCATCAATATAGATCCATTCGTTATTATCTAATACAG
CACATGAAAAGTGGTTTCCTTTATGTCTAACAAGACCTCTCAAGGCATAG
TTTTGATCATTTAAGACCAAATTCTTATCATATTTTATCTCATTATCACC
TCCAAATTCTACAAGGTAGATTTTAGGAGTAACAAATGACACTAATGCTG
TATCTCtagaaatattttcacacctgcACATTATTGATTTATCAATCGTA
ATTGGGCTTAAAAGGTTTTGCCATTTATTAAAGTCATCTAAAAGACGCAA
GTTTAATTCTGAAACGTAATTTAAAAATGTACTACATTGACGTACCAATT
CTTCACCACAGTTAGAGCATGATCCCTCTAATCTGTAACGTGTCTCAAAT
AAATCTTTCTCCTGGACTGAAAGATTACAAACAGTCTGTcctgaaaaaat
ttgagaaaactctGCATTGGCATCACGATTTTCAAAAGATGTACAGTTTG
TAATTAAGAAATCCCAAACAGGTTGGCGAATGACAGATaaattttcctca
ttttctCTATCGTCTGTAATGTCTGAATTTAAAATGATACTGTAAGACCT
CAAAGAATCTGTtaacaaatcaaaaaataagCTCTGTGTCTCAATTTTGG
CAACATAAGAGCCAAACGTAGAATATGCTACTTCCAAAAACGAATCTACT
GCACACGTATACACTGATTCTTGCCGTCTACATGAATTCATAAAATGTAG
GTCTCTATTACCTCTATTATTATTGTACATGTAATCATTCTGATCTATGT
GTCCTTCTACTAAACCTTCGACTATATTTTTCTGAGAAATTCCTTCATAA
GAAGGCTGATCAATATTTTCCTGAGAATTTCCTTCATAAGAAGGCTGAAc
attatgaatatttttttggcgagcaagtccgctacgtgaagcaacaaaag
ccccttcGGGGCAAAAAGACTCATTTTTATAGACTCAGGTTATTATTTAT
CCAAGTgaatcttcaatcttaaaacatttttactGTGAAAAAATGTTCAT
GAAATATACTCACTTATCATTTTTGCTGAATGAATCAGTGATCAACTTTG
GGTTGTATTTTTTTATACGATCCAGTAGTACCTCAGGGGGGTGTCCAAAT
GCGATGAAGAAATCctaagatacacgtttttttttattagaacacctaaa
atttggctgagcctggatgtgcttattttttttagcaattttcagcctaa
aatgtttttaaatgcgttcttaatttttcagactactctaaatcgacaat
atgataaaaaataaagagcacttaaaatgagcactaaatttggcaaaatt
tggacaatatttgactctcgatttttgaagatccacccctaaattcggtt
aaaactgcttaaaaagaggaaaaaattgtagtttcttgtctttttttcca
aactgaggccggttagtgtaaaacacaggtcacgggtcacaggtcacggg
tcacaggtcacaggtcatacaaattacagaccggaaaactgtaacgcact
cgtaacataaAACTCATAGCATAagctcctgaaaatattatatgtaatgt
AAATGtgatatcaaaatatgttatttaaaagacttaaaaatgacaaatca
tcaaccctaaatattgacaacaaatgacacttaaattatgtaaataatga
tgttatctcaaagtatgaggttttgtacaccaattaacatcaaaatattt
ttcatgcataataggatgctgacgctgcaaatggatatagattgacaggt
tttgaaaacaataaatactccgagagagctgttttagagagatgaaaatt
gtgacgtcattttatcaaaaatacaaagcaagggataaaaatattgaaac
atttataaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttccaaactgaggct
gcgcatgttcttaagatgttcttaatttttcgacgaatttcagcctatat
gttcttataaactgggttctaataaaaaaaaacgtgtatatgaaTTTGGT
ATAAAACTCTTCAGTCATTGCCTTTCCATTCTTGCCTAAGACCCATCGAA
ATATTTAAGTTTTAATGAATTTGgtgttttcattatattttcacACAATA
AAAATACTGATCCAATTTTCTTTCCCAGTAACAGATGTCGAATCAAACAG
CTATTCAGTGGATAATTTGGACAAATTCAAACGGACAGATCACCGAGCAA
AAACAAGATGTTTTGTGCTTTTCGCTCTCTTGTTTACCATTTATCAAATC
TCGTGTTTTTCGAATGGCTGGTTGATCAATGGAGATGAATATTTGGGTTT
GTGGCAACTTTGTTCAGAAAGTGTTGGATGTTTGTGGATGGAACAAAGCC
CTTCCTACGATGGTATGTACTTAGTAAAATTAAGTTTTCactctaaaaaa
atattctatcTACTATACATTGCTATCGATCGATAGCGTCATTTTTTTCA
GTAGAATACATACatgttgattattttttcatgaaaagggcttgagatta
aatttttttatttttttcaaaaaccaaaGGAATATAgccaagttttattt
ttctgtcAATAAAACTCTAATAATATAATTTCATTAAAGCcacacacccc
cttctcgcagacccagtaggatttttcagccagcgggaataaaaataacg
gactgaaactcgatggagattgctattctcatattttttatgaatggaga
tttcaattcctttttttcaagtcagaaaattcagtttgGATGGGAAAAag
ggtaaatattttgcagtgaggattggtttatttgattgttttcagtgggg
acaaaaatttgaggataattttccaccggggacgatttttggccaatttt
tccagtgggaagggttccaaGTGGGTCTGTGATAAGAGGGTGTATTAGCC
AATAGAACAGCTTGGTTTAAGTATTCTTCTTGTCTTTCTCATTTATAGTT
CCCTTCTTGGATTGGTTTTCAACGGTTCGCGCTTTCCTTCTTCTAACGTC
AATTTTCACCATATTCGCGATGGCTTTTCAAATCGCAAATATTTATTGTG
ATCAGACCATCTCGATGTTCCCTGTTCGTGTTTGCGCTATTTTCAATGGT
AAGTTATTCATGTTTccataaaagaatattttttcttgattgtATGCCTT
TAttgatcttttaaaaaaacacattttaagcaaaattttatATGATATAA
CTCTATTCGATATTTGTATTAAATACCGTGAGAGTATCGCAGTTTTCCTG
GACTTGTGCGAATATTAGAGAAATGAGTTTATTAAGAAAAAAATCCTTTA
ATTAACCCCCAAGAGGCGTAAAAATCTGTATGACGTTTAGGCCTTCATCC
AAGAGGGATCCAAAATTCTTGATGAATATACTATGGTTACCTTTTGTCTC
TGGTTGCGCTCTaaatacattaaaggaagaaagtttggcggatttggcag
aTTTGGTCAAAATCTCTCATATAATTTTTTTCGTCATCCACAAAATTAAA
TTCGCGCTAAATTTAAGTTGCtctatttattcccccaaatgtgtactatt
tcaggctttaaaacaggtttttccttTCTTGATGgcattttttggacaaa
aaaccCCTTTGcgtccaccaaattaaattcccgccaaatttaatttttca
agttaaccgccaaatggaattccctctgaaaaaactttttcgaatgcatc
caccaaattaaattcccgccaaaattccTTTAATGTAGAATCACGATCTG
TCATTACAGTGTATATACATACTCTAATCaatgtgatactcacggtatgG
ATAGNccgccaaattaaattttcaccaaaatttcttcctttaatgtagaA
TCGCGATCTGTCATTACAGTGTATATTCATACTCTAGTCaatgtgatact
cacggtaaggATAAAAGGGTATTTGAAACaagttttacaaaaacaaatat
tttcattacaGTGTTATACCTCTTATTGAGTATTATCATCTTTCCAACGC
ACAAACCCAACAACTTTGATGACATCTGGCAACTGGGATGGTCCTATTAC
GTCACTTGTGTTGCTTGCTTACTCAGCATACTTCAAGCTACTATCACTTT
CCGTGTAGGCAGGGAAAACAGGCCTAAAAAAATCTCACCACCGGGAATCT
CCGGACCACCGATCGGCCGAATCCAAATTAACGACCCGACGTCGGCGGAA
GGGGCCGTTGCACGTGACGATTGGACACTCGACGacaaaagtttcttcaa
taCAACAGAAGCTGATCCCTTACCTGAGAAGAAGTCTCCCAGCTCCTTAT
CGAGTTATAGTGGTGACAATAGTGGCTCTTCGAGTGGGCGTAGCAGTCGT
TCGAGTAGCGTGACAAGCGGGAGTAGCTTTGTAAGTAGTGCTTCGAGTTA
CTCGAGTGACTCAGAAAGTATTGGCAAAGAAAGTGATGATCGAATCGATT
TGGTGTGAGTGATGACAATGGACAATTCTTAAACTTTAGTAATTAATGAA
AGAAAGCGAGTTAGTTTCGACTCACTTATATTTTTCTAGATTGAAATAAA
GATGGGATCgaggaagaaaaaaaaggaCTTTTCATCATCGATGACTATAC
CTGTAGAAtattttttacagattttactTTAAACATATTTAGAATCCTTT
AGAAGTCGTATGAtggttaaactttttcattgcCAGTGAAACATTCTTAT
TGCCACCCTTTATAACGATAAGATAAAGTCATATCAACTTGTAAGACGGT
TAGCCTCAAGGACATTGCGTGTTGTTTACGCATTTTTACGcagtaatgaa
aatatttttcctggTATGCCCCGAATAAAACAGTGGAAAGATCTTGGAAA
TGCGCCAGGAATGTTTCCAGAGAAATTTGAAAGTCTAGCTATCCTACGGT
AGCTTGGCACAGTAACTGTAATATTGAAATATTAGAAGACTAATAACCTt
ttctcgggtgcctaataaatgATATGTATTTTTATAAAGTTAAAGTATCT
AGAGTATTCATTACTAAAGTTTATTTGGTCGTTATGTTCTATTTCATTCC
CGGGGTGGGGGTAATAGGTTTTCGAGATGACGGGTACATATACCGCCTGA
CTTTTGGCGGTGGGGCTTTTTGAGGGACTAAAACTAACCCTTAAAGGGAC
TGAAATAGAGGAAAAACCAGAATTGTCAAAGATTATATATGACCCTTATT
GGGAGTATTTTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017586-exon-sc0000271-1491911889:55984..56154 | TCONS_00017586-exon-sc0000271-1491911889:55984..56154 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1510915933:55984..56154 | TCONS_00017586-exon-sc0000271-1510915933:55984..56154 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1575043694:55984..56154 | TCONS_00017586-exon-sc0000271-1575043694:55984..56154 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1491911889:59818..60045 | TCONS_00017586-exon-sc0000271-1491911889:59818..60045 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1510915933:59818..60045 | TCONS_00017586-exon-sc0000271-1510915933:59818..60045 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1575043694:59818..60045 | TCONS_00017586-exon-sc0000271-1575043694:59818..60045 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1491911889:60632..60781 | TCONS_00017586-exon-sc0000271-1491911889:60632..60781 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1510915933:60632..60781 | TCONS_00017586-exon-sc0000271-1510915933:60632..60781 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1575043694:60632..60781 | TCONS_00017586-exon-sc0000271-1575043694:60632..60781 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1491911889:61645..62898 | TCONS_00017586-exon-sc0000271-1491911889:61645..62898 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1510915933:61645..62898 | TCONS_00017586-exon-sc0000271-1510915933:61645..62898 | Clytia hemisphaerica | exon |
| TCONS_00017586-exon-sc0000271-1575043694:61645..62898 | TCONS_00017586-exon-sc0000271-1575043694:61645..62898 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:55984..62898 + |
Blast
The following BLAST results are available for this feature:
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