TCONS_00017583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017583
Unique NameTCONS_00017583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017583 ID=TCONS_00017583|Name=TCONS_00017583|organism=Clytia hemisphaerica|type=transcript|length=1179bp
ATAAGCTTAGTTCAACGTTGACAGACGAGATTGTCTCGTGTGTGAGAAAG
AGGGAAGATTCTGTCAAGATACAGCATGAAGTTACAGAGCATGTTGGCCA
TTGCCTTTACGTTGGTTGTTTTTGCAGAGGCTTATAATTTCAATCATGAT
ATGGGCGCTAAATTAGATGGGCGTATTATCCACGTGGAGTCGTTGAGATA
TAGAGGTCATTGGTTGAAATCATCGTTTCACAACGGTGGTAAATGGATTG
CTGTTTATGGATTGGCTCAAAGAGATACCTATTATACACAATGGTCGCAA
TTTAAGGTCAAACACGTGGGAGGTGGTAAGGTGACGATCGAATCAATGAC
CTATCCACACCACTACTTTGACTCTCATTACTCTGGATGGGTTGGGACTA
CTTACTCCACATACCCTGATAATCAGGCTTGGGCTCAATGGAAAATTTAT
TGCACCAGTCAATCAATGGATGTTTGTCGTTTTGAATCGATGAGATATCG
AGGACATTACTTCGACTCCAGTCACACCGGAGGTCTTGGAGTTGCAAGAT
ATGGCAATGGTTGGTCAAGGTTCCGAATTTTAGCACCAAACGCTGAAGAT
TACTATGTGACAATCCTTTCTACAGAGAATCACAGCAGTGCTTCATCCAA
GAAAACATTAACAGTTGAAGAAGGGGTGATTGACTCAACAACCACCGAAA
ATACCATCACCACCTCTGTCTCTGTTGAAGTTCAAAAAGCTTTCGTCACT
GCATCAGCCTCCGTTACTCATGAATGGAAGCAAACTGAATCGAAGACATT
CGAGAAACGAACCTCATTCACATACGAAGTTCCCATCCCTGCTCGTTCAA
AGATCGAGGTCAAACAACTAACCGGTGAATACGGTCCTTTCCGAATCAAA
GTCAACAAATTCATCATTAAAGAAACGAAACTCGATGGACGCAAACGTGG
ACTTATCGAAGAATTTGACGGATACTTGATTGACTACTAAAAAGGAAATT
CTCCACCCAATTTGATATGAAATCGTAAACTCATTTCAGAGGAGCTGTAT
TTCGAATTATATATCTTTCTTGACTTGTAATATTTGTTAGCGTTCTACTT
TGCTAAAATATGACTTTTAGATAATGGACATGCTCATTTATTTGATTGAC
CTTTCCCTGTTTTTAAGAGTTTCCATCAC
Run BLAST on NCBI

transcript from alignment at sc0000271:48566..53406+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017583 ID=TCONS_00017583|Name=TCONS_00017583|organism=Clytia hemisphaerica|type=transcript|length=4841bp|location=Sequence derived from alignment at sc0000271:48566..53406+ (Clytia hemisphaerica)
ATAAGCTTAGTTCAACGTTGACAGACGAGATTGTCTCGTGTGTGAGAAAG
AGGTGGATGTGTTTTATTTAAAGTagcattttacattttttgttttccgA
CTTCTTGTTGGTTTAATTCGATAATTTTTAATCTCTGGAATGGTATTTAA
CAGATTTCAGTCCTTTTTGACGACTGACCATATATTCATAAATTGGATAA
CGAACTATAAATATCTTTCAGGGAAGATTCTGTCAAGATACAGCATGAAG
TTACAGAGCATGTTGGCCATTGCCTTTACGTTGTAAGTAGATATTCAGTA
AAAATGTTTTCCTGTTTATTCACCGGATTTTAGACTCTACTGTAATCCCC
AAAAACTTTCAGACACTATAGAGACTTTATGTTGTATTTTCGCCGTCTAA
GTCAGGGAGGAATATTTCACTATTTTTTAATCCATCCAAAAACGTTTGGC
TTTCTGTTCCTTTAAGCCAACATTATTTGAAGGCACTGCTCTTGATTTTC
TCTGTGCAGGGTTGTTTTTGCAGAGGCTTATAATTTCAATCATGATATGG
GCGCTAAATTAGATGGGCGTATTATCCACGTGGAGTCGTTGAGATATAGA
GGTCATTGGTTGAAATCATCGTTTCACAACGGTGGTAAATGGATTGCTGT
TTATGGATTGGCTCAAAGAGATACCTATTATACACAATGGTCGCAATTTA
AGGTGAGCAACTATTAATTTTCACATGTGTTTTCTCAGAAAGATGCCCCC
CCCCCGACAATGTCATCaaacttttcgaaatttaatCTAGTTACATTGTG
TCATCAATAATGTTATGACCTATTTTTGTGGTCTTTTCGCAAAAATACGG
GTGAAAGCAATTAAAGTCTGTCACAAAAATTGGAAGTTTGTGCTTTTGAG
CATTAACATAATGCACTTAGAATTATTTTTCCAACGAGGAATTTCTTTGA
ATTCCATCTTTTTTTCAGTTGAGagtaatctttaaaaaagattctttgaa
aCTGACTTGACGTTATAGTTTCCAGAGTGGAAAAACATACACTCTTTTTA
CTTTATACGCATCgcacttataagcatacgcAGGCTCAGATGAGGCAAAA
ATATAAGCGTATGCTAAgccttcattttcagattttgcctgtttttggct
gaattttatgtttttcgGTATTTCTCTAAAACATTGCCTATGATTTAAGC
AtctttgaaagctttttttACAGCCTTCTCAAGCCTTAAGCATCTCCAAa
cctttcaaatttttgtatgcttataaaaatacatTTATCCTTCGTGTTCA
GTCATTTGGTTTGTTCGACAGGCTAATGTGTGTTCCTTAAAATTATAATT
GActcttaacatttttgaaacGACCCATTTTATCAAAGTCACCTTTCGAA
ATTTACGATATTCATGCCGTATTTTTCACTAGTTTTgttgttaaaaaatt
caaaaatagtgGTAAAAACCTGGTCTTTTGGGGTGCTTCCCTCTGAAGCA
TTATGTCATAAATAACACGACATTATTTTCATACAGGTCAAACACGTGGG
AGGTGGTAAGGTGACGATCGAATCAATGACCTATCCACACCACTACTTTG
ACTCTCATTACTCTGGATGGGTTGGGACTACTTACTCCACATACCCTGAT
AATCAGGTTTGTTAGTGTTTTGACTAAATAACATGCACgtcccgaatagt
agggggTCAGAATAAAAGGAGGgtccaaatatttttttaaatcttataaA
CAGAGGGAGNAGCATTAACATAATGCACTTAGAATTATTTTTCCAACGAG
GAATTTCTTTGAATTCCATCTTTTTTTCAGTTGAGagtaatctttaaaaa
agtacTAATTCTTTGAAACAGACATGACGTTATAGTTTCCAGAGTGGAAA
AACATACACTCTTTTTACTTTATACGCATCgcacttataagcatacgcAG
GCTCAGATGAGGCAAAAATTTAAGCGTATGCTAAgccttcattttcagat
tttgcttgtttttggctgaattttatgtttttcgGTATTTCTCTAAAACA
TTGCCTATGATTTAAGCAtctttgaaagctttttttACAGCCTTCTCAAG
CCTTAAGCATCTCCAAacctttcaaatttttgtatgcttataaaaataca
tTTATCCTTCGTGTTCAGTCATTTGGTTTGTTCGACAGGCTAATGTGTGT
TCCTTAAAATTATAATTGActcttaacatttttgaaacGACCCATTTTAT
CAAAGTCACCTTTCGAAATTTACGATATTCATGCCGTATTTTTCACTAGT
TTTgttgttaaaaaattcaaaaatagtgGTAAAAACCTGGTCTTTTGGGG
TGCTTCCCTCTGAAGCATTATGTCATAAATAACACGACATTATTTTCATA
CAGGTCAAACACGTGGGAGGTGGTAAGGTGACGATCGAATCAATGACCTA
TCCACACCACTACTTTGACTCTCATTACTCTGGATGGGTTGGGACTACTT
ACTCCACATACCCTGATAATCAGGTTTGTTAGTGTTTTGACTAAATAACA
TGCACGTCTCGAATAGTAGGGGGTCAGAATAAAAGGAGGgtccaaatatt
tttttaaatcttataaACAGAGGGAGTTCGAAATTACACCCCAAAAActc
caaaataaggtaattataaGCTAAAAACAGGCTTAGAGCAATTTAGCCTG
TATTAACcgaaagtattttcaaaaatatataaacggggacctaaaaattt
tattgaaagttAATAACTAGGTGGGGACGTTTGTTCGGGACCTTAGAGCA
ATGTCATTACTCTGACTAGTACATTCCCGTGTTGTTGATACCCCTGTCTC
AGCCATCTTACAAAAATTTGATGCCAGTTGGAAGTTAAATACAGACGACG
ATAGAAAAGCATGTTTTAGTAAGGGGAATCTTCAGCTTTGTTTATACTAC
CGTGTAAATCATTGTATTTAAcatcttaaaaattattttgtatatAATGA
AAGGCTTGGGCTCAATGGAAAATTTATTGCACCAGTCAATCAATGGATGT
TTGTCGTTTTGAATCGATGAGATATCGAGGACATTACTTCGACTCCAGTC
ACACCGGAGGTCTTGGAGTTGCAAGATATGGCAATGGTTGGTCAAGGTTC
CGAATTTTAGCACCAAACGCTGAAGATTACTATGTGTGAGTTCTAGTTCT
TCTGTTTTATTCTCCTCAGCTTGGAAATATTTACTTACATAGCACCTCTA
ACCTTTCTCCCACTCCCATGTAAAGTGAGCAAAAATTTTAAGCAGTATCA
GAGGCACGCCTCCttttctatatcataaaaacCAACTATGTTCACTTAAA
AGTCCTATCTATACcgtttttgagagctttcgattgGTATAAGTGGTTTC
GGGTTTTATTGACCTTGAAATTTCTTCAAATGCctgtgacgtcagttttt
gGGTCCTAAAAAAATTCCCAGACGTAAGCAAACAACCCCCTTCGCGGAAA
TCCCTTTAGATTTCCATACATTGAAATGGACCAGGTTTGGTTGCGTAGCA
TAAAAGTTGGCACGGGTCCTAAGGGTTTGCCCCCTATTACCATAAGGACA
AACAAACAGACTGCGTTTGTTTCAGATGATGAATATCCGGCTGGTTTTTT
GTACTGCTCAAAATCATAACAATAGTTTTATCCCACGTTTGAGAATCTCC
AAGATAACCGCGTTCAGCTACAATACTACAAtatataaaacaattttttt
ttccttcgcAGGACAATCCTTTCTACAGAGAATCACAGCAGTGCTTCATC
CAAGAAAACATTAACAGTTGAAGAAGGGGTGATTGACTCAACAACCACCG
AAAATACCATCACCACCTCTGTCTCTGTTGAAGTTCAAAAAGCTTTCGTC
ACTGCATCAGCCTCCGTTACTCATGAATGGAAGGTGTGCTAAACGTTTTT
CACTGACCTTTTTTATAAAAGTCTAATTCCGGCCTAGGAAAATCTTtcaa
tcggattttttttttaaaaatgtaactACTGCATAATAGCGGTGCAACGC
TTCGAAAGCGGTAGATCTACTTTTCTATGCGAAATTGCGATGTTGCGCCA
TTTGATGTTTTAACACTCCAAtgggcttctttacgggtacctcTTTCATA
AAAATTCCGACCAAAGATGGCagaatataatttgtataaagGTTGGTGGA
TTTTCCCTATCAAGGTCTATTCATAAACTCTATTTTAGCCCTAATGTTAT
TTCCTCTACCTGGATCTCAAATCTCAAAGTTTATACAAACTGGttccttg
aaaaataaaagattattCGATTGGCCTTTAAATAAAGTGGCCTGGATGTT
TTAACCTTTAATCTTTTAAGGATTGGAAATTCAGATATCTACTTTTTTAG
GAGTTTAAGGGTTAATTCCACAACCTTTTCTTCATTTAACAGCAAACTGA
ATCGAAGACATTCGAGAAACGAACCTCATTCACATACGAAGTTCCCATCC
CTGCTCGTTCAAAGATCGAGGTCAAACAACTAACCGGTGAATACGGTCCT
TTCCGAATCAAAGTCAACAAATTCATCATTAAAGAAACGAAACTCGATGG
ACGCAAACGTGGACTTATCGAAGAATTTGACGGATACTTGATTGACTACT
AAAAAGGAAATTCTCCACCCAATTTGATATGAAATCGTAAACTCATTTCA
GAGGAGCTGTATTTCGAATTATATATCTTTCTTGACTTGTAATATTTGTT
AGCGTTCTACTTTGCTAAAATATGACTTTTAGATAATGGACATGCTCATT
TATTTGATTGACCTTTCCCTGTTTTTAAGAGTTTCCATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009834XLOC_009834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017583-exon-sc0000271-1491911889:48566..48617TCONS_00017583-exon-sc0000271-1491911889:48566..48617Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1510915933:48566..48617TCONS_00017583-exon-sc0000271-1510915933:48566..48617Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1575043694:48566..48617TCONS_00017583-exon-sc0000271-1575043694:48566..48617Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1491911889:48787..48847TCONS_00017583-exon-sc0000271-1491911889:48787..48847Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1510915933:48787..48847TCONS_00017583-exon-sc0000271-1510915933:48787..48847Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1575043694:48787..48847TCONS_00017583-exon-sc0000271-1575043694:48787..48847Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1491911889:49075..49267TCONS_00017583-exon-sc0000271-1491911889:49075..49267Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1510915933:49075..49267TCONS_00017583-exon-sc0000271-1510915933:49075..49267Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1575043694:49075..49267TCONS_00017583-exon-sc0000271-1575043694:49075..49267Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1491911889:50102..50221TCONS_00017583-exon-sc0000271-1491911889:50102..50221Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1510915933:50102..50221TCONS_00017583-exon-sc0000271-1510915933:50102..50221Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1575043694:50102..50221TCONS_00017583-exon-sc0000271-1575043694:50102..50221Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1491911889:51569..51750TCONS_00017583-exon-sc0000271-1491911889:51569..51750Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1510915933:51569..51750TCONS_00017583-exon-sc0000271-1510915933:51569..51750Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1575043694:51569..51750TCONS_00017583-exon-sc0000271-1575043694:51569..51750Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1491911889:52327..52498TCONS_00017583-exon-sc0000271-1491911889:52327..52498Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1510915933:52327..52498TCONS_00017583-exon-sc0000271-1510915933:52327..52498Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1575043694:52327..52498TCONS_00017583-exon-sc0000271-1575043694:52327..52498Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1491911889:53008..53406TCONS_00017583-exon-sc0000271-1491911889:53008..53406Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1510915933:53008..53406TCONS_00017583-exon-sc0000271-1510915933:53008..53406Clytia hemisphaericaexon
TCONS_00017583-exon-sc0000271-1575043694:53008..53406TCONS_00017583-exon-sc0000271-1575043694:53008..53406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:48566..53406 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
402.132	398.801	463.002	298.677	0	0	1.51848e-07	0	2.70867	8.44507	0.0358913	1.11767	0	0	5.2048e-05	0.000127637	0	0	0	0.000324546	0	0	127.514	74.3207	0.000137476	0	9.08305	5.74084	58.3693	34.792
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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