TCONS_00017574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017574
Unique NameTCONS_00017574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017574 ID=TCONS_00017574|Name=TCONS_00017574|organism=Clytia hemisphaerica|type=transcript|length=362bp
CGAGGTCATCAGCATAGCCACACCATTCGAGAATTGATTTTCCAGCGAGC
TTTTTCCCTTGTTCTCTAAGAGCCGCTCTTTCATCTCTGGTGAACGATTT
CATATTGATACCGTatgttcaaaaaaatcaattctttcCTTTTTCCCCTT
TTCGATGAAGAGACGCATGACGAAGTCTATGTAAAGATTGAAAAGGAGAG
GACTCTCTGGGCCACCTTGTCTAACCCCTGACGAAGTCGTAAACGTATTT
TCCTCACACGTCAATGAAGTTTTCTCATAAAGAATGTTGagaatatttat
catttttggtAGTTGATTAGGTCTGAAACGCAATTGTATCGATTTGAATA
GCCATCTACGAG
Run BLAST on NCBI

transcript from alignment at sc0000269:331446..331807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017574 ID=TCONS_00017574|Name=TCONS_00017574|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at sc0000269:331446..331807 (Clytia hemisphaerica)
CTCGTAGATGGCTATTCAAATCGATACAATTGCGTTTCAGACCTAATCAA
CTaccaaaaatgataaatattctCAACATTCTTTATGAGAAAACTTCATT
GACGTGTGAGGAAAATACGTTTACGACTTCGTCAGGGGTTAGACAAGGTG
GCCCAGAGAGTCCTCTCCTTTTCAATCTTTACATAGACTTCGTCATGCGT
CTCTTCATCGAAAAGGGGAAAAAGgaaagaattgatttttttgaacatAC
GGTATCAATATGAAATCGTTCACCAGAGATGAAAGAGCGGCTCTTAGAGA
ACAAGGGAAAAAGCTCGCTGGAAAATCAATTCTCGAATGGTGTGGCTATG
CTGATGACCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009830XLOC_009830Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017574-exon-sc0000269-1491911889:331446..331807TCONS_00017574-exon-sc0000269-1491911889:331446..331807Clytia hemisphaericaexon
TCONS_00017574-exon-sc0000269-1510915933:331446..331807TCONS_00017574-exon-sc0000269-1510915933:331446..331807Clytia hemisphaericaexon
TCONS_00017574-exon-sc0000269-1575043694:331446..331807TCONS_00017574-exon-sc0000269-1575043694:331446..331807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:331446..331807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.927523	0.22612	1.05019	1.02745	2.18893	0.988412	0.596238	1.95367	1.95401	0.484072	1.17463	0.308862	0.771083	0.480466	0.395008	0.141302	0	0.178418	0.492988	0	0.672586	0	0	0.241714	4.9792	3.33286	0.317954	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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