TCONS_00017569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017569
Unique NameTCONS_00017569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017569 ID=TCONS_00017569|Name=TCONS_00017569|organism=Clytia hemisphaerica|type=transcript|length=491bp
GTATTATATTAGTCTAAAGAATTGTATATTATACTTTATTATAactttat
aacattttttttttgaaaatatagtattGCGAAAGCTACCTTTTTTTAcg
tttaaaagaacaattttgtactcttttgaagtatttcaacatttttagct
TAGATTTTTAAATAAgcattttttataataacaGAGGTCTAAAATTTAGA
TGACGCCTGAcagacatttttattttttcaaaaatcaaagaaagaaattg
tGTAAGCGCAttaaatatttgttttttaagAAGTTCGCATTACATAAAGT
CGCTTTTTTTAGGGCAAACCCAATCAAATAGTGATTAAAATGAATTGGTC
ATCTTGTTAATGCTCTCTTTTTAAGGTGTTACATTTTTCAGATTAGTATA
TTCATACATTTTACTTATGTCATTGATGTAACTAGTTTTTCTCAAATACc
gaattaacgaaaatttgaaataaaactgtcaaacaacgaat
Run BLAST on NCBI

transcript from alignment at sc0000269:206777..207267

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017569 ID=TCONS_00017569|Name=TCONS_00017569|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0000269:206777..207267 (Clytia hemisphaerica)
attcgttgtttgacagttttatttcaaattttcgttaattcgGTATTTGA
GAAAAACTAGTTACATCAATGACATAAGTAAAATGTATGAATATACTAAT
CTGAAAAATGTAACACCTTAAAAAGAGAGCATTAACAAGATGACCAATTC
ATTTTAATCACTATTTGATTGGGTTTGCCCTAAAAAAAGCGACTTTATGT
AATGCGAACTTcttaaaaaacaaatatttaaTGCGCTTACacaatttctt
tctttgatttttgaaaaaataaaaatgtctgTCAGGCGTCATCTAAATTT
TAGACCTCtgttattataaaaaatgcTTATTTAAAAATCTAagctaaaaa
tgttgaaatacttcaaaagagtacaaaattgttcttttaaacgTAAAAAA
AGGTAGCTTTCGCaatactatattttcaaaaaaaaaatgttataaagtTA
TAATAAAGTATAATATACAATTCTTTAGACTAATATAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009826XLOC_009826Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017569-exon-sc0000269-1491911889:206777..207267TCONS_00017569-exon-sc0000269-1491911889:206777..207267Clytia hemisphaericaexon
TCONS_00017569-exon-sc0000269-1510915933:206777..207267TCONS_00017569-exon-sc0000269-1510915933:206777..207267Clytia hemisphaericaexon
TCONS_00017569-exon-sc0000269-1575043694:206777..207267TCONS_00017569-exon-sc0000269-1575043694:206777..207267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:206777..207267 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.122682	0	0	0.339317	0	0.161746	0	0.530078	0.52527	0.6373	1.34059	0	0	0.142875	0.383318	0.377773	0	0.401209	0.839672	0.486552	0.889961	0.576994	0.262286	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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