TCONS_00017562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017562
Unique NameTCONS_00017562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017562 ID=TCONS_00017562|Name=TCONS_00017562|organism=Clytia hemisphaerica|type=transcript|length=565bp
ATCACAAATAGGATTGTTTGTCTTTCTTAGAGAGAGAGGTTTAATACCCT
AAAAGTAACTCACTTCTNNNTGAATtacattttcacacgcatgtgatttt
ttgcaggatcacatgctcggaaattggttttcacacgcatgtgatttttt
gcaggatcacatgctcggaaattggttttcacacgcatgtgattcgcgga
ttttttcctgtgattaTTTTTAACATACTATGCatgtttacacaaagatt
ataAATCCAACAAAGTATCCAACCATTGCTTTTTCATTCCTGTTTTTCAC
TATATGTATGTGGTGAAATAAGCTATCGTGTCTTAACACCCCTTCAGGGC
TAACAATAAGGCTAGACTAGACTTACTTACAATGCTTCATTGGTTGACAC
ATAAAtgcattaacaaaaatattcccCaTGCAATGTTTAATAATAGAAAT
CTACAATAAAAACGAAATTGTTCTCTTCTACTGAGTGCTTCCATAATTTA
CATAATGATGAAGGCTTACCACTCTGGCCCTAATTGTTGGTGCCAATGGc
ttttcagtgccttgc
Run BLAST on NCBI

transcript from alignment at sc0000269:120208..120772

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017562 ID=TCONS_00017562|Name=TCONS_00017562|organism=Clytia hemisphaerica|type=transcript|length=565bp|location=Sequence derived from alignment at sc0000269:120208..120772 (Clytia hemisphaerica)
gcaaggcactgaaaagCCATTGGCACCAACAATTAGGGCCAGAGTGGTAA
GCCTTCATCATTATGTAAATTATGGAAGCACTCAGTAGAAGAGAACAATT
TCGTTTTTATTGTAGATTTCTATTATTAAACATTGCAtGgggaatatttt
tgttaatgcaTTTATGTGTCAACCAATGAAGCATTGTAAGTAAGTCTAGT
CTAGCCTTATTGTTAGCCCTGAAGGGGTGTTAAGACACGATAGCTTATTT
CACCACATACATATAGTGAAAAACAGGAATGAAAAAGCAATGGTTGGATA
CTTTGTTGGATTtataatctttgtgtaaacatGCATAGTATGTTAAAAAt
aatcacaggaaaaaatccgcgaatcacatgcgtgtgaaaaccaatttccg
agcatgtgatcctgcaaaaaatcacatgcgtgtgaaaaccaatttccgag
catgtgatcctgcaaaaaatcacatgcgtgtgaaaatgtaATTCANNNAG
AAGTGAGTTACTTTTAGGGTATTAAACCTCTCTCTCTAAGAAAGACAAAC
AATCCTATTTGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009819XLOC_009819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017562-exon-sc0000269-1491911889:120208..120772TCONS_00017562-exon-sc0000269-1491911889:120208..120772Clytia hemisphaericaexon
TCONS_00017562-exon-sc0000269-1510915933:120208..120772TCONS_00017562-exon-sc0000269-1510915933:120208..120772Clytia hemisphaericaexon
TCONS_00017562-exon-sc0000269-1575043694:120208..120772TCONS_00017562-exon-sc0000269-1575043694:120208..120772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:120208..120772 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95463	0.488812	0.836146	1.23118	0.403177	0.463379	0	0.449902	0.642417	0.581027	0.504827	0.0672306	0.397671	0.139422	0.255739	0.203547	0	0.246764	0.423749	0.359603	2.22345	1.42008	0.414493	0.12436	0.106997	0.477461	1.36503	0.945905	0.255444	0.466501
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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