TCONS_00017556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017556
Unique NameTCONS_00017556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017556 ID=TCONS_00017556|Name=TCONS_00017556|organism=Clytia hemisphaerica|type=transcript|length=140bp
gtaactcgaaaataaattttaaatttcatttttcgagaTACGTAACTCGA
AATTGTAGTACATTATTTGAACTTTCGAGTTATCTCTAGGTGAAACCAAG
TCGGCTAAAAATACTAGAATTCACCATTTTTTTTGAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000269:59105..59244

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017556 ID=TCONS_00017556|Name=TCONS_00017556|organism=Clytia hemisphaerica|type=transcript|length=140bp|location=Sequence derived from alignment at sc0000269:59105..59244 (Clytia hemisphaerica)
CTTCTCAAAAAAAATGGTGAATTCTAGTATTTTTAGCCGACTTGGTTTCA
CCTAGAGATAACTCGAAAGTTCAAATAATGTACTACAATTTCGAGTTACG
TAtctcgaaaaatgaaatttaaaatttattttcgagttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009813XLOC_009813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017556-exon-sc0000269-1491911889:59105..59244TCONS_00017556-exon-sc0000269-1491911889:59105..59244Clytia hemisphaericaexon
TCONS_00017556-exon-sc0000269-1510915933:59105..59244TCONS_00017556-exon-sc0000269-1510915933:59105..59244Clytia hemisphaericaexon
TCONS_00017556-exon-sc0000269-1575043694:59105..59244TCONS_00017556-exon-sc0000269-1575043694:59105..59244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:59105..59244 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top