TCONS_00017554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017554
Unique NameTCONS_00017554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017554 ID=TCONS_00017554|Name=TCONS_00017554|organism=Clytia hemisphaerica|type=transcript|length=271bp
GAGGATGCGTACTTAATGTCAACTGGATGGAAAACAAGCCCGCCCCTGAC
GCAGTTCTCGAGTTTGCATCTTGCAAGTGCAAGAAAACTAAATGCTGTAA
CAAGCAATGTAAATGTAAATCGCTTGGACTCCCTTGCACCGATTTATGTG
AATGTGTGAACTGTGAGAACGAACCAATCGCCTCTGAAGAGCAGAAAGAC
GACGAAGTCGTCGGTGATGACGAGGGAATGGACGTTGACGTAATCGATTT
TGAAGATTTATTGGATGAAGG
Run BLAST on NCBI

transcript from alignment at sc0000269:36998..37268

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017554 ID=TCONS_00017554|Name=TCONS_00017554|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0000269:36998..37268 (Clytia hemisphaerica)
CCTTCATCCAATAAATCTTCAAAATCGATTACGTCAACGTCCATTCCCTC
GTCATCACCGACGACTTCGTCGTCTTTCTGCTCTTCAGAGGCGATTGGTT
CGTTCTCACAGTTCACACATTCACATAAATCGGTGCAAGGGAGTCCAAGC
GATTTACATTTACATTGCTTGTTACAGCATTTAGTTTTCTTGCACTTGCA
AGATGCAAACTCGAGAACTGCGTCAGGGGCGGGCTTGTTTTCCATCCAGT
TGACATTAAGTACGCATCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009811XLOC_009811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017554-exon-sc0000269-1491911889:36998..37268TCONS_00017554-exon-sc0000269-1491911889:36998..37268Clytia hemisphaericaexon
TCONS_00017554-exon-sc0000269-1510915933:36998..37268TCONS_00017554-exon-sc0000269-1510915933:36998..37268Clytia hemisphaericaexon
TCONS_00017554-exon-sc0000269-1575043694:36998..37268TCONS_00017554-exon-sc0000269-1575043694:36998..37268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:36998..37268 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.26531	0	0	0	0.718374	0.672533	0.470856	1.7497	0	1.86066	0	0.385925	0.317282	0	0.838918	0.859864	1.18795	0.621551	1.08048	0	0	0	15.1773	14.2957	0.766171	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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