TCONS_00017553 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017553
Unique Name	TCONS_00017553
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	765

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000269:370715..373462-

transcript sequence

>TCONS_00017553 ID=TCONS_00017553|Name=TCONS_00017553|organism=Clytia hemisphaerica|type=transcript|length=765bp
TTTTAGTACAATTGTTTCGCCACTTCAAAGAGCTACATTTGTTTTGGAGC
AAGTACTGGTAGTACTTATGTTTATGGTAGGAGTAATGGAGAACTGCTCC
GGTTCTTTGGCAATAAGGTTCATGGTATAGTAGGATTGTGTTTTTCTCCT
GATGAAAAGTATATTACAGCTGCTGACAGAACTGGAAATGTGACTTGTTG
GGAAATAACCTCTCAGAATTATGATTTCAAGATCATCAAAGAATTTATTG
AATTTGACGGGACAACTATCACATCAATGTGTTGGGATGAATactcttca
aaactttttgttgGTAATTCAAAAGGACTAATCATGGGTTTTGCTGTTGG
TTTTGCAGCATTTCATAAATTGGAAGTGATTCGAAAAGCTGGTGACCCAA
TTGTTCAGATGGATGTATGTAATGGTAAATTGGTTGTTTCAAGTACAACC
AAAGCAATCCTATGTTTACTTGAAAGGTCTCAATTTTGTCAGATTGGTAC
AAAACCAAGagatGGTCTGTATGGAACTTGTTTTCTTAAAGCCAGACCAG
AGAACCAACCAGTTATTTATTCTGCAAGACCTGGCTCAAGGCTTTGGGAg
GTTGATTTCAATGGTCAAGTCTTGGCAACTCATCAGTTCAAAGAATCACT
TAGTACTCCACCAACACCTCTTGTCACCAGCAGagaaTTGAAATTTCATC
CATCAAACACGGTCTGGAACTCACCTCAAGGCTTTAACTTTCCAAAACTA
TGTCCGCTCATGTAA

Run BLAST on NCBI

transcript from alignment at sc0000269:370715..373462-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017553 ID=TCONS_00017553|Name=TCONS_00017553|organism=Clytia hemisphaerica|type=transcript|length=2748bp|location=Sequence derived from alignment at sc0000269:370715..373462- (Clytia hemisphaerica)
TTTTAGTACAATTGTTTCGCCACTTCAAAGAGCTACATTTGTTTTGGAGC
AAGTACTGGTAGTACTTATGTTTATGGTAGGAGTAATGGAGAACTGCTCC
GGTTCTTTGGCAATAAGGTAAAGTTTTTAATTATTAAATGGATCCTCATT
TCTTGGTTGGTGTATTTAGAAGTGATCAGGTGCAGTGGGGTTTCCTCATC
GAATTTTAACATTTTCTGATGTCTTGAAGACAAAAAAATATGCTTAGCGC
TTTAATATTGAGATATTCTATATCCTAAGTTAAAATTTTACAGATTTAGA
ACCTCTAATGACCATATCTTTTTTGTTTTTATTTCTTATCAATCTCATTT
CAGGTTCATGGTATAGTAGGATTGTGTTTTTCTCCTGATGAAAAGTATAT
TACAGCTGCTGACAGGTTGATAAATTTACATTGTTAACAAACTTTGTTCT
TAAATACAAATTTTGTTGTTAGCACATCAATTGTGTCAAAGCTAATTGTG
TCAAAGCTTAGGATGAGCAAAAAAATGATCTTAGCAAGTGAACTTTTTTT
ATGATTTTAAAAGTTTTTTAGTCATTTATGATCTGATAGGTAAATGATGG
GCTACAAAATGTTTATTGTAAGCTGCAATTTTTATCATGGGTTATAGTAT
TGATTTATTTTTCCTAGAACTGGAAATGTGACTTGTTGGGAAATAACCTC
TCAGAATTATGATTTCAAGGTATAAATATTGGTGTTTTTTTTATCAATTA
CTGTTGCTGCTTTATTTGTGACAAAGGACTTTAAGTATAATAGAAACAAA
ATTCAAATTGACAGGATCAGAGCAATTTGTTTAGACTTCTGTATTTTGGA
ATATTTTGATACATTTCATTCGTACATTCCAGTCAGTCATTAATAAAAGC
TTTGTATAGAAATGTTCCAAATGTGTTTTGTCATCCTAGATCATCAAAGA
ATTTATTGAATTTGACGGGACAACTATCACATCAATGTGTTGGGATGAAT
ACTCTTCAAAACTTTTTGTTGGTAATTCAAAAGGACTAATCATGGGTTTT
GCTGTTGGTTTTGCAGTAAGAGTGATTTTTTTATCACATGGTTATTTACT
AGCTCCAGTTAAATATTTTAAATTGCTATTTTTCAACATTGAAATACTTA
ATGTTAGTCAGTATAAGTTACTTATTATGTTATTAAATTATATATTATTG
AGAATTGAGATGCTGGAGTTTCTTTCTTTAGGCATTTCATAAATTGGAAG
TGATTCGAAAAGCTGGTGACCCAATTGTTCAGATGGTAAGTTTGATGCAC
ATTCACATCTTCAAACTCAAACTCAAACTGCCTTCTTCTTTATGATCAAT
CCTGCTACAAGATCTTGATTTCAATACAGTATGTTTAAGGTTTATCTTTT
GCAATACTTTTTTTAAGTAAATGATTTATATATTTCTCTGTTTTTTTATC
TTTCAAGGATGTATGTAATGGTAAATTGGTTGTTTCAAGTACAACCAAAG
CAATCCTATGTTTACTTGAAAGGTTAGATATTCCTTCCTGATTTTAAATG
TCATCACCTTTCTCGTCCAAAGTTAAACTTTTACCAAAAATTTAGATATT
CAACCACGTAAAATAGAAAAAGAATAGGTAGAAACTGCTTTTTATTGTAC
ATCTCCAATATGCATCACACAATTTAAAATTTTTCAATCAGCTGTTATTA
TCTTTCATTTTAGGTCTCAATTTTGTCAGATTGGTACAAAACCAAGGTAA
ATTTTATAATTAAATTGCTATAGAATGTTTTTTATTGTGAGTCACTCTGT
TTTTAGTAATTACTTGCTGCACACCATCGTAGTAATAGTACCTATTTTTT
TAATTTTTAGAGATGGTCTGTATGGAACTTGTTTTCTTAAAGCCAGACCA
GAGAACCAACCAGTTATTTATTCTGCAAGACCTGGCTCAAGGCTTTGGGA
GGTATATATTTTATATTTTCACTAAGCTGCAGTATAATCAAAGTGTATCT
TCTTAATCATNATTCTGCAAGACCTGGCTCAAGGCTTTGGGAGGTATATA
TTTTATATTTTCACTAAGCTGCAGTATAATCAAAGTGTATCTTCTTAATC
ATCATATCCTAATCGTAAATTAAAAATGGGTTTACCTTTTTCTACCAATT
GTAGGATAGACCCAGATATGTAAAGTAATCCTTTTTTCATAACTCTATGA
AATATCTTTGTCATCGTTCAACGTATCTTACCATGTGCTTAGGCACCACT
GCGCAAGTACAAATTTGAGAAAATTATATTATAATAAAGACACACTTCTC
ATTATATCTAAGGTTGATTTCAATGGTCAAGTCTTGGCAACTCATCAGTT
CAAAGAATCACTTAGTACTCCACCAACACCTCTTGTCACCAGCAGGTTAG
TATGTTAGATATTAAAAGAATTTGACTGTTTTTATTATGAAGCCTAACTT
CAATAGCTTATTGAACTAGTGAACCACTGAACATTATTTAAAAAAAGTTA
TTTAGCACCAAATTTAAAGATCGATTTGTCTTTACAATGAATGAAGCAAA
AATTTATTAAAAGTTTCATTTTGTTTCAAGGTTTCGCATTCTTTCGGACA
GAATCACTCAAAGCCAGTCAATTAAAGCTCTTGCACCAACTTTAACTAAT
TATTTTTTTTCTTCAGAGAATTGAAATTTCATCCATCAAACACGGTCTGG
AACTCACCTCAAGGCTTTAACTTTCCAAAACTATGTCCGCTCATGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009810	XLOC_009810	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000269	supercontig	sc0000269:370715..373462 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.20141	2.30228	0.686353	0.494782	5.16299	3.67188	4.512	5.99052	3.52197	4.42913	3.65255	2.76226	5.09247	5.24451	5.23564	5.94915	4.5506	5.94075	3.86633	5.32346	5.36738	4.42355	6.21877	6.41869	6.78237	6.4811	3.49979	3.36156	6.62194	6.60239

Blast

[Close]

BLAST of TCONS_00017553 vs. Swiss-Prot (Human)
Match: HPS5 (Hermansky-Pudlak syndrome 5 protein OS=Homo sapiens GN=HPS5 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.865e-42
Identity = 91/264 (34.47%), Postives = 141/264 (53.41%), Query Frame = 1

Query:   16 FATSKSYICFGASTGSTYVYGRSNGELLRFFGNKVHGIVGL-CFSPDEKYITAADRTGNVTCWEITSQNYDFKIIKEFI--EFDGTTITSMCWDEYSSKLFVGNSKGLIMGF----------AVGFAAFHKLEVIRKAGDPIVQMDVCNGKLVVSSTTKAILCLLERSQFCQIGTKPRDGLYGTCFLKARPE--NQPVIYSARPGSRLWEVDFNGQVLATHQFKESLSTPPTPLVTSRELKFHPS-NTVWNSPQGFNFPKLCPL 759
             A S+ ++  G+S G  ++  +   +   F  ++   I  + C   D+ Y+  A   G V  WE+ +Q    K  + ++  E  G  +T++CWD    ++FVG+  G +             A  F  F  ++ I      +VQ+D  +G+L++SS T++ LC  ER +F +IG K RDG YG CF   R     QP+IY ARPGSR+WEV+F+G+V++THQFK+ LS PP P++T   L+  P  +    S Q  +FPKL  L
Sbjct:   40 IAVSRKWLALGSSGGGLHLIQKEGWKHRLFLSHREGAISQVACCLHDDDYVAVATSQGLVVVWEL-NQERRGKPEQMYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMF-PVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVIT---LRSEPQYDHTAGSSQSLSFPKLLHL 298

The following BLAST results are available for this feature:

BLAST of TCONS_00017553 vs. Swiss-Prot (Human)

BLAST of TCONS_00017553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HPS5	2.865e-42	34.47	Hermansky-Pudlak syndrome 5 protein OS=Homo sapien...	[more]

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TCONS_00017553 (transcript) - C. hemisphaerica