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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017544 ID=TCONS_00017544|Name=TCONS_00017544|organism=Clytia hemisphaerica|type=transcript|length=1794bp
TGGCCTTCTActactaaagatgaaaattctcAGATTACTAATATACCCCA
AGTTTTAGTATCTAGATCCTGATTTGACCTGTATTATTAACAGAAAtaac
ttgcttataaaaatgatCATGTTTGTAATAGTGTAATgaataaaaatgca
aaaaaatgccaGATAAAAACCCAATAAACTTTGATGACCGTTTTGAAGGC
CTGGAAAAAGATCCAGTTTTTTTGCGGAAACGAAAAGCAACACTGATATG
TTTCTTCATTCGTATGTTCTTATTGGGAGCTGAATATGCGATCATATTAC
CTTCAATTTGGCTTTATTTGAAGAGATACCCTGACGTCAAAACATGGTTT
TTGGGTATTGTGGTTGCAATATACCCTACTTCAGCTGTGTTGTCTTTACC
TGTTGTTGGtcgaatttttgacaaaacaaAACGCTCAAAAGAATTAATCA
TCGTTTTGAATACCTTTGAAATAGTAGGTAATATCATCTATGccttacca
ttttcaaaatggcTCATCTTTGCTGGTCGTTTCTTTGCTGGACTTGGCGA
TGGATTTTATGCTTGTGCAACTTCAGAAATTGTTCATACATATCCTTTAT
CAAGTCGCACAGGGGCGCTGGCTCTGCTGGAACTGGGTAGAGTTTTAGGT
CTTACTTTTGGGCCAGCTCTGAACTTCTTTTTAGTAAAGGTTGATTTCAC
TATGGGAAAATGGACCATAGACAATGGAACAGCACCTGGTTTATTCATGG
CTATTTTATGGTTACTAGCTCAACTAATAAGTGTGTTCTACATCTCAAAC
CTCTCATTATTAATTGAAGAACGTGCAAAGTATCACCCTAACATGCAGTT
AGACAGAAGAGGAAATGTTCCTCCCACAGAGTATGAAATTGATTTCAAGA
GGGTCAGAGAAACTTCATTATGTGAATCTGTACTAGATGTGACCTATGGT
GACGAGAAACCATTAGTACCAAAGGAGTATCGTAAACATTTCAAATGTTA
TAAAGCAGCAAATGGTCGAACCTTCATTGATGATAATATTGTAACTGAGG
ATGATGAAGAATTTTACAATGACGATGAATCGCAAATGACAACAACTGAC
TATGGCGATTCAATCAAACTTGTTCAAAAGAAAAGCGCATTCCAACAAGC
TCTAGAGCTGATCACCACAATCGAAATTGTTGCTATATTTTATTCTGATT
TGATTTTGTCTTTAATTCAAACTGAATTTGAAGTTTTCTTGCCCTTGATT
ACACAAGAAGGTTATGGTTGGAAAGAAACCGAAACAAGTGGTGTTTATAT
GGTTGGTGGTGTTTGGCTAATGTTTGTCTTTTTCCTAATGTATAAATTTT
CAGGAAAGTCCAAAATCAAAGACCAGCATTATATCATAATCTCCTTAATT
TTGACCAGTCTGGCTCTTCTGCTACTGATGGTTGAAGTTGTTGTACCCAA
ACATGCTCGAGTGGCAGTATTTGTTATTATATGTGTATTTGTTTTTTCGG
CCATCCCGCTTAACCTTGTGGCTGGCAAATCCTTGACCACAAAACTGACA
CCGAGAGAGACTCAAGGATTCACTCAAGCTGTATATTCATCAATCAGTCG
TGTTTCATTGATTCTAGGACCCATCATAGCTGCAGCAGCTTTTGAGCATC
GTTTGCAGTTCTCAGCTAGTATGTTATGTTTTTGTATCGTTGGATTGATT
GCGATGGTTATGTTGTTAGGCAAAATCCGAcgtaaaattatcaaaataca
aGGATCAGATGGCTGAAAGTATTTCTCAGTAGATAAAAGTTTCC Run BLAST on NCBI protein sequence of TCONS_00017544-protein >TCONS_00017544-protein ID=TCONS_00017544-protein|Name=TCONS_00017544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp
MPDKNPINFDDRFEGLEKDPVFLRKRKATLICFFIRMFLLGAEYAIILPS
IWLYLKRYPDVKTWFLGIVVAIYPTSAVLSLPVVGRIFDKTKRSKELIIV
LNTFEIVGNIIYALPFSKWLIFAGRFFAGLGDGFYACATSEIVHTYPLSS
RTGALALLELGRVLGLTFGPALNFFLVKVDFTMGKWTIDNGTAPGLFMAI
LWLLAQLISVFYISNLSLLIEERAKYHPNMQLDRRGNVPPTEYEIDFKRV
RETSLCESVLDVTYGDEKPLVPKEYRKHFKCYKAANGRTFIDDNIVTEDD
EEFYNDDESQMTTTDYGDSIKLVQKKSAFQQALELITTIEIVAIFYSDLI
LSLIQTEFEVFLPLITQEGYGWKETETSGVYMVGGVWLMFVFFLMYKFSG
KSKIKDQHYIIISLILTSLALLLLMVEVVVPKHARVAVFVIICVFVFSAI
PLNLVAGKSLTTKLTPRETQGFTQAVYSSISRVSLILGPIIAAAAFEHRL
QFSASMLCFCIVGLIAMVMLLGKIRRKIIKIQGSDG Run BLAST on NCBI transcript from alignment at sc0000269:115838..119452- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017544 ID=TCONS_00017544|Name=TCONS_00017544|organism=Clytia hemisphaerica|type=transcript|length=3615bp|location=Sequence derived from alignment at sc0000269:115838..119452- (Clytia hemisphaerica)
TGGCCTTCTACTACTAAAGATGAAAATTCTCAGATTACTAATATACCCCA
AGTTTTAGTATCTAGATCCTGATTTGACCTGTATTATTAACAGAAATAAC
TTGCTTATAAAAATGATCATGTTTGTAATAGTGTAATGAATAAAAATGCA
AAAAAATGCCAGATAAAAACCCAATAAACTTTGATGACCGTTTTGAAGGC
CTGGAAAAAGATCCAGTTTTTTTGCGGAAACGAAAAGCAACACTGATATG
TTTCTTCATTCGTATGTTCTTATTGGGAGCTGAATATGCGATCATATTAC
CTTCAATTTGGCTTTATTTGAAGAGATACCCTGACGTCAAAACATGGTTT
TTGGGTATTGTGGTTGCAATATACCCTACTTCAGCTGTGTTGTCTTTACC
TGTTGTTGGTCGAATTTTTGACAAAACAAAACGCTCAAAAGAATTAATCA
TCGTTTTGAATACCTTTGAAATAGTAGGTAATATCATCTATGCCTTACCA
TTTTCAAAATGGCTCATCTTTGCTGGTCGTTTCTTTGCTGGACTTGGCGA
TGGATTTTATGCTTGTGCAACTTCAGAAATTGTTCATACATATCCTTTAT
CAAGTCGCACAGGGGCGCTGGCTCTGCTGGAACTGGGTAGAGTTTTAGGT
CTTACTTTTGGGCCAGCTCTGAACTTCTTTTTAGTAAAGGTTGATTTCAC
TATGGGAAAATGGACCATAGACAATGGAACAGCACCTGGTTTATTCATGG
CTATTTTATGGTTACTAGCTCAACTAATAAGTGTGTTCTACATCTCAAAC
CTCTCATTATTAATTGAAGAACGTGCAAAGTATCACCCTAACATGCAGTT
AGACAGAAGAGGAAATGTTCCTCCCACAGAGTATGAAATTGATTTCAAGA
GGGTCAGAGAAACTTCATTATGTGAATCTGTACTAGATGTGACCTATGGT
GACGAGAAACCATTAGTACCAAAGGAGTATCGTAAACATTTCAAATGTTA
TAAAGCAGCAAATGGTCGAACCTTCATTGATGATAATATTGTAACTGAGG
ATGATGAAGAATTTTACAATGACGATGAATCGCAAATGACAACAACTGAC
TATGGCGATTCAATCAAACTTGTTCAAAAGAAAAGCGCATTCCAACAAGC
TCTAGAGCTGATCACCACAATCGAAATTGTTGCTATATTTTATTCTGATT
TGATTTTGTCTTTAATTCAAACTGAATTTGAAGTTTTCTTGCCCTTGATT
ACACAAGAAGGTTATGGTTGGAAAGAAACCGAAACAAGTGGTGTTTATAT
GGTTGGTGGTGTTTGGCTAATGTTTGTCTTTTTCCTAATGTATAAATTTT
CAGGAAAGTCCAAAATCAAAGACCAGCATTATATCATAATCTCCTTAATT
TTGACCAGTCTGGCTCTTCTGCTACTGATGGTTGAAGTTGTTGTACCCAA
ACATGCTCGAGTGGCAGTATTTGTTATTATATGTGTATTTGTTTTTTCGG
CCATCCCGCTTAACCTTGTGGCTGGCAAATCCTTGACCACAAAACTGACA
CCGAGAGAGACTCAAGGATTCACTCAAGCTGTATATTCATCAATCAGTCG
TGTTTCATTGATTCTAGGACCCATCATAGCTGCAGCAGCTTTTGAGCATC
GTTTGCAGTTCTCAGCTAGTATGTTATGTTTTTGTATCGTTGGATTGATT
GCGATGGTTATGTTGTTAGGCAAAATCCGACGTAAAATTATCAAAATACA
AGGTTGAGACGGCTGAAAGTATTTCTCAGTAGATAAAAGTTTCCCCTTTT
TGACTGGCTAATTTTCAGATTTTTTTCTTCGTTTTTTAAAACTTTCACTA
ACTTGTGTTTCTATTTCTTTGTTTTATAGAGTGTTACTTATCTGTATTTT
AGAGTGTCTAATCCAGTCTATTTTCTTAGAAAAAAATCACATAATCTAAA
GAGGGAAATAGTTCAGGATATTCTTCATATGCTTGGATCAGCTTTTGTAG
CTATGGTTTGAACTTTATTTCTTTTTGACCTTTTTTAATACTTACATTCA
CTATTTATACTTATAATACAATGCAACAAAATAATTTCATATTTTTTACA
AATTTTATACTTTACTTTTACGGTCTTGATAACATACACTTTATACAATG
TTCTCAACCAATTGGTAAAATTGTGGAAAGTTCGAAGTATTCCTCCGTTC
TTTTGTCCCCGATAATAATTTCACTACTTCGACATAAGCTATATTTCTTC
ATTGAAAAGACATATATTTTTCTCTTTCTTTTTTTTAAATAGTGATCTAT
TATCAACTATACTGTAGGGCTGGTCTGATAGGTTAATTTTATAGTATAAT
AATTTAGTCTTAAGCAGTCTTAAGGATTATAGATTTTATGATTTTTAGAA
ATGATTTTATTGACTTAATTGTGACAGAAACCTATAGCTATAGACATGCA
CTCATAGAATCGTTTAAAAATAGAAAATTTTTNCCAGCTCTGAACTTCTT
TTTAGTAAAGGTTGATTTCACTATGGGAAAATGGACCATAGACAATGGAA
CAGCACCTGGTTTATTCATGGCTATTTTATGGTTACTAGCTCAACTAATA
AGTGTGTTCTACATCTCAAACCTCTCATTATTAATTGAAGAACGTGCAAA
GTATCACCCTAACATGCAGTTAGATAGAAGAGGAAATGTTCCTCCCACAG
AGTATGAAATTGATTTCAAGAGGGTCAGAGAAACTTCATTATGTGAATCT
GTACTAGATGTGACCTATGGTGACGAGAAACCATTAGTACCAAAGGAGTA
TCGTAAACATTTCAAATGTTATAAAGCAGCAAATGGTCGAACCTTCATTG
ATGATAATATTGTAACTGAGGATGATGAAGAATTTTACAATGACGATGAA
TCGCAAATGACAACAACTGACTATGGCGATTCAATCAAACTTGTTCAAAA
GAAAAGCGCATTCCAACAAGCTCTAGAGCTGATCACCACAATCGAAATTG
TTGCTATATTTTATTCTGATTTGATTTTGTCTTTAATTCAAACTGAATTT
GAAGTTTTCTTGCCCTTGATTACACAAGAAGGTTATGGTTGGAAAGAAAC
CGAAACAAGTGGTGTTTATATGGTTGGTGGTGTTTGGCTAATGTTTGTCT
TTTTCCTAATGTATAAATTTTCAGGAAAGTCCAAAATCAAAGACCAGCAT
TATATCATAATCTCCTTAATTTTGACCAGTCTGGCTCTTCTGCTACTGAT
GGTTGAAGTTGTTGTACCCAAACATGCTCGAGTGGCAGTATTTGTTATTA
TATGTGTATTTGTTTTTTCGGCCATCCCGCTTAACCTTGTGGCTGGCAAA
TCCTTGACCACAAAACTGACACCGAGAGAGACTCAAGGATTCACTCAAGC
TGTATATTCATCAATCAGTCGTGTTTCATTGATTCTAGGACCCATCATAG
CTGCAGCAGCTTTTGAGCATCGTTTGCAGTTCTCAGCTAGTATGTTATGT
TTTTGTATCGTTGGATTGATTGCGATGGTTATGCTGTTAGGCAAAATCCG
ACGTAAAATTATCAAAATACAAGGATCAGATGGCTGAAAGTATTTCTCAG
TAGATAAAAGTTTCC Coding sequence (CDS) from alignment at sc0000269:115838..119452- >TCONS_00017544 ID=TCONS_00017544|Name=TCONS_00017544|organism=Clytia hemisphaerica|type=CDS|length=3222bp|location=Sequence derived from alignment at sc0000269:115838..119452- (Clytia hemisphaerica)
GATCAGATGGCTGAATGCCAGATAAAAACCCAATAAACTTTGATGACCGT
TTTGAAGGCCTGGAAAAAGATCCAGTTTTTTTGCGGAAACGAAAAGCAAC
ACTGATATGTTTCTTCATTCGTATGTTCTTATTGGGAGCTGAATATGCGA
TCATATTACCTTCAATTTGGCTTTATTTGAAGAGATACCCTGACGTCAAA
ACATGGTTTTTGGGTATTGTGGTTGCAATATACCCTACTTCAGCTGTGTT
GTCTTTACCTGTTGTTGGTCGAATTTTTGACAAAACAAAACGCTCAAAAG
AATTAATCATCGTTTTGAATACCTTTGAAATAGTAGGTAATATCATCTAT
GCCTTACCATTTTCAAAATGGCTCATCTTTGCTGGTCGTTTCTTTGCTGG
ACTTGGCGATGGATTTTATGCTTGTGCAACTTCAGAAATTGTTCATACAT
ATCCTTTATCAAGTCGCACAGGGGCGCTGGCTCTGCTGGAACTGGGTAGA
GTTTTAGGTCTTACTTTTGGGCCAGCTCTGAACTTCTTTTTAGTAAAGGT
TGATTTCACTATGGGAAAATGGACCATAGACAATGGAACAGCACCTGGTT
TATTCATGGCTATTTTATGGTTACTAGCTCAACTAATAAGTGTGTTCTAC
ATCTCAAACCTCTCATTATTAATTGAAGAACGTGCAAAGTATCACCCTAA
CATGCAGTTAGACAGAAGAGGAAATGTTCCTCCCACAGAGTATGAAATTG
ATTTCAAGAGGGTCAGAGAAACTTCATTATGTGAATCTGTACTAGATGTG
ACCTATGGTGACGAGAAACCATTAGTACCAAAGGAGTATCGTAAACATTT
CAAATGTTATAAAGCAGCAAATGGTCGAACCTTCATTGATGATAATATTG
TAACTGAGGATGATGAAGAATTTTACAATGACGATGAATCGCAAATGACA
ACAACTGACTATGGCGATTCAATCAAACTTGTTCAAAAGAAAAGCGCATT
CCAACAAGCTCTAGAGCTGATCACCACAATCGAAATTGTTGCTATATTTT
ATTCTGATTTGATTTTGTCTTTAATTCAAACTGAATTTGAAGTTTTCTTG
CCCTTGATTACACAAGAAGGTTATGGTTGGAAAGAAACCGAAACAAGTGG
TGTTTATATGGTTGGTGGTGTTTGGCTAATGTTTGTCTTTTTCCTAATGT
ATAAATTTTCAGGAAAGTCCAAAATCAAAGACCAGCATTATATCATAATC
TCCTTAATTTTGACCAGTCTGGCTCTTCTGCTACTGATGGTTGAAGTTGT
TGTACCCAAACATGCTCGAGTGGCAGTATTTGTTATTATATGTGTATTTG
TTTTTTCGGCCATCCCGCTTAACCTTGTGGCTGGCAAATCCTTGACCACA
AAACTGACACCGAGAGAGACTCAAGGATTCACTCAAGCTGTATATTCATC
AATCAGTCGTGTTTCATTGATTCTAGGACCCATCATAGCTGCAGCAGCTT
TTGAGCATCGTTTGCAGTTCTCAGCTAGTATGTTATGTTTTTGTATCGTT
GGATTGATTGCGATGGTTATGTTGTTAGGCAAAATCCGACGTAAAATTAT
CAAAATACAAGGATCAGATGGCTGAATGCCAGATAAAAACCCAATAAACT
TTGATGACCGTTTTGAAGGCCTGGAAAAAGATCCAGTTTTTTTGCGGAAA
CGAAAAGCAACACTGATATGTTTCTTCATTCGTATGTTCTTATTGGGAGC
TGAATATGCGATCATATTACCTTCAATTTGGCTTTATTTGAAGAGATACC
CTGACGTCAAAACATGGTTTTTGGGTATTGTGGTTGCAATATACCCTACT
TCAGCTGTGTTGTCTTTACCTGTTGTTGGTCGAATTTTTGACAAAACAAA
ACGCTCAAAAGAATTAATCATCGTTTTGAATACCTTTGAAATAGTAGGTA
ATATCATCTATGCCTTACCATTTTCAAAATGGCTCATCTTTGCTGGTCGT
TTCTTTGCTGGACTTGGCGATGGATTTTATGCTTGTGCAACTTCAGAAAT
TGTTCATACATATCCTTTATCAAGTCGCACAGGGGCGCTGGCTCTGCTGG
AACTGGGTAGAGTTTTAGGTCTTACTTTTGGGCCAGCTCTGAACTTCTTT
TTAGTAAAGGTTGATTTCACTATGGGAAAATGGACCATAGACAATGGAAC
AGCACCTGGTTTATTCATGGCTATTTTATGGTTACTAGCTCAACTAATAA
GTGTGTTCTACATCTCAAACCTCTCATTATTAATTGAAGAACGTGCAAAG
TATCACCCTAACATGCAGTTAGACAGAAGAGGAAATGTTCCTCCCACAGA
GTATGAAATTGATTTCAAGAGGGTCAGAGAAACTTCATTATGTGAATCTG
TACTAGATGTGACCTATGGTGACGAGAAACCATTAGTACCAAAGGAGTAT
CGTAAACATTTCAAATGTTATAAAGCAGCAAATGGTCGAACCTTCATTGA
TGATAATATTGTAACTGAGGATGATGAAGAATTTTACAATGACGATGAAT
CGCAAATGACAACAACTGACTATGGCGATTCAATCAAACTTGTTCAAAAG
AAAAGCGCATTCCAACAAGCTCTAGAGCTGATCACCACAATCGAAATTGT
TGCTATATTTTATTCTGATTTGATTTTGTCTTTAATTCAAACTGAATTTG
AAGTTTTCTTGCCCTTGATTACACAAGAAGGTTATGGTTGGAAAGAAACC
GAAACAAGTGGTGTTTATATGGTTGGTGGTGTTTGGCTAATGTTTGTCTT
TTTCCTAATGTATAAATTTTCAGGAAAGTCCAAAATCAAAGACCAGCATT
ATATCATAATCTCCTTAATTTTGACCAGTCTGGCTCTTCTGCTACTGATG
GTTGAAGTTGTTGTACCCAAACATGCTCGAGTGGCAGTATTTGTTATTAT
ATGTGTATTTGTTTTTTCGGCCATCCCGCTTAACCTTGTGGCTGGCAAAT
CCTTGACCACAAAACTGACACCGAGAGAGACTCAAGGATTCACTCAAGCT
GTATATTCATCAATCAGTCGTGTTTCATTGATTCTAGGACCCATCATAGC
TGCAGCAGCTTTTGAGCATCGTTTGCAGTTCTCAGCTAGTATGTTATGTT
TTTGTATCGTTGGATTGATTGCGATGGTTATGTTGTTAGGCAAAATCCGA
CGTAAAATTATCAAAATACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017544-exon-sc0000269-1575043694:117701..119452 | TCONS_00017544-exon-sc0000269-1575043694:117701..119452 | Clytia hemisphaerica | exon |
| TCONS_00017544-exon-sc0000269-1575043694:115838..115879 | TCONS_00017544-exon-sc0000269-1575043694:115838..115879 | Clytia hemisphaerica | exon |
| TCONS_00017544-exon-sc0000269-1510915933:117701..119452 | TCONS_00017544-exon-sc0000269-1510915933:117701..119452 | Clytia hemisphaerica | exon |
| TCONS_00017544-exon-sc0000269-1510915933:115838..115879 | TCONS_00017544-exon-sc0000269-1510915933:115838..115879 | Clytia hemisphaerica | exon |
| TCONS_00017544-exon-sc0000269-1491911889:117701..119452 | TCONS_00017544-exon-sc0000269-1491911889:117701..119452 | Clytia hemisphaerica | exon |
| TCONS_00017544-exon-sc0000269-1491911889:115838..115879 | TCONS_00017544-exon-sc0000269-1491911889:115838..115879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:115838..119452 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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