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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017526 ID=TCONS_00017526|Name=TCONS_00017526|organism=Clytia hemisphaerica|type=transcript|length=1351bp
CTGTCatttacgtcatcaaaacatatcacagaaaaaatgctGAAACGCTG
ACActcctgaaaaaaaaacgcTGAAATTCCAAGAAATCTAAATTTGACTA
GCTTATACGTTTTTAGAAGACCAAATATGACGATGAATTCATTTCCATTG
TTCATTGTCACAGTATAAATAGAAACGCAAGAAGTGAACAGTATTAAGAA
GCTCACCATCAGACAGAGAAGATATACCACAAAAAACAGACAACAAAGTT
AACTCTTGGTATCATGATGAAaatcgtttttctttttctggtTTGTTTTG
TTCTTCAACAAACAAGTTCAAATGAGTTGAAGGAAGGAGaatctcACAGC
CGTGAACGCAGAGCAGTGTGTGGTTTTCAAAGATATAACCCGACATTTAG
AATGTGCTGCGGTGGCAGATTGGTTTTCAAAGGATCTAACAATGCGTGCT
GTGGACAGGCAGGTTATAACATTCGATTCAGGATGTGCTGCGGTGGCAGA
TTGGTTTTCAAAGGATCTAACAATGCGTGCTGTGGACAGGCAGGTTATAA
CATTCGATTCAGGATGTGCTGCGGTGGCAGATTGGTTTTCAAAGGATCTA
ACAATGCGTGCTGTGGACAGGCAGGTTATAACATTCGATTCAGGATGTGC
TGCGGTGGCAGATTGGTTTTCAAAGGATCTAACAATGCGTGCTGTGGACA
GGCAGGTTATAACATTCGATTCAGGATGTGCTGCGGTGGCAGATTGGTTT
TCAAAGGATCTAACAATGCGTGCTGCGGGCAGACAGGTTATAACATTCGA
TTCAGAAGTTGCTGCAATGGTCGACTATGTTAAAAGGATAACTTTATAGC
TACCGTTTTGAAGTTGTCAAAGGCGATTCTCCTTCCTCAGCTCGATCGCA
TTAACCATCGAGTTTAAAGTCCGAAGGGCTGGAGAGGAATTTTTTACCTC
TATCATGTAGAAATAAGTAAAGCCTTAAGCTTTGATTCGCTTTTAGAATG
AGAGATTACATCGAACATTGTTTACCTTCCTTCGGCATATTTTTCTAAAT
CCTTTCAATCTGGTGTTTGTGTGAAAAGCACGCTGGTCACGCGTTTCAGA
TGGGAAATAACTGGATTCTTTTCTTATCCAAGAGTCTCAACTCTAGCCCC
TCGGGGCCTTAAACTCAATGGTAATAGCCCTTATCAAGAATTCGTAGAAA
CAAAAGGAGCAAAATgatatcaaaaatataattttttattttgtattttt
gtagagcaatcttttgatgttttttcatatatttttcatatatataaata
aaattCTCAATATTAGTTCCTTAAAATACGGATTCCAATTGAGTTATAAC
c Run BLAST on NCBI transcript from alignment at sc0000269:356226..357828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017526 ID=TCONS_00017526|Name=TCONS_00017526|organism=Clytia hemisphaerica|type=transcript|length=1603bp|location=Sequence derived from alignment at sc0000269:356226..357828+ (Clytia hemisphaerica)
CTGTCatttacgtcatcaaaacatatcacagaaaaaatgctGAAACGCTG
ACActcctgaaaaaaaaacgcTGAAATTCCAAGAAATCTAAATTTGACTA
GCTTATACGTTTTTAGAAGACCAAATATGACGATGAATTCATTTCCATTG
TTCATTGTCACAGTATAAATAGAAACGCAAGAAGTGAACAGTATTAAGAA
GCTCACCATCAGACAGAGAAGATATACCACAAAAAACAGACAACAAAGTT
AACTCTTGGTATCATGATGAAaatcgtttttctttttctggtTTGTTTTG
TTCTTCAACAAACAAGTTCAAATGAGTTGAAGGAAGGAGGTAAATATGTA
ACATGTTCGAACCCAGTAACTCTAATGAAACATAAGGTTTCCTTTTCGAA
AACTAGATTTTGCCTTTTTAGCAACCAGTGGAAAACTGGTTACAAAAAAC
AACTTCTTCTTCCCTTGTTCTTTTATCTTATCCTTTCGATCTATGAAAAG
GGATGGTAAAATTGGAACAGGAAACCTGACATTAAAAGATTCGCATTCAA
CGTATCAAAAACTTCAACAACATTCTCcgtttacctttcagaatctcACA
GCCGTGAACGCAGAGCAGTGTGTGGTTTTCAAAGATATAACCCGACATTT
AGAATGTGCTGCGGTGGCAGATTGGTTTTCAAAGGATCTAACAATGCGTG
CTGTGGACAGGCAGGTTATAACATTCGATTCAGGATGTGCTGCGGTGGCA
GATTGGTTTTCAAAGGATCTAACAATGCGTGCTGTGGACAGGCAGGTTAT
AACATTCGATTCAGGATGTGCTGCGGTGGCAGATTGGTTTTCAAAGGATC
TAACAATGCGTGCTGTGGACAGGCAGGTTATAACATTCGATTCAGGATGT
GCTGCGGTGGCAGATTGGTTTTCAAAGGATCTAACAATGCGTGCTGTGGA
CAGGCAGGTTATAACATTCGATTCAGGATGTGCTGCGGTGGCAGATTGGT
TTTCAAAGGATCTAACAATGCGTGCTGCGGGCAGACAGGTTATAACATTC
GATTCAGAAGTTGCTGCAATGGTCGACTATGTTAAAAGGATAACTTTATA
GCTACCGTTTTGAAGTTGTCAAAGGCGATTCTCCTTCCTCAGCTCGATCG
CATTAACCATCGAGTTTAAAGTCCGAAGGGCTGGAGAGGAATTTTTTACC
TCTATCATGTAGAAATAAGTAAAGCCTTAAGCTTTGATTCGCTTTTAGAA
TGAGAGATTACATCGAACATTGTTTACCTTCCTTCGGCATATTTTTCTAA
ATCCTTTCAATCTGGTGTTTGTGTGAAAAGCACGCTGGTCACGCGTTTCA
GATGGGAAATAACTGGATTCTTTTCTTATCCAAGAGTCTCAACTCTAGCC
CCTCGGGGCCTTAAACTCAATGGTAATAGCCCTTATCAAGAATTCGTAGA
AACAAAAGGAGCAAAATgatatcaaaaatataattttttattttgtattt
ttgtagagcaatcttttgatgttttttcatatatttttcatatatataaa
taaaattCTCAATATTAGTTCCTTAAAATACGGATTCCAATTGAGTTATA
ACc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017526-exon-sc0000269-1491911889:356226..356564 | TCONS_00017526-exon-sc0000269-1491911889:356226..356564 | Clytia hemisphaerica | exon |
| TCONS_00017526-exon-sc0000269-1510915933:356226..356564 | TCONS_00017526-exon-sc0000269-1510915933:356226..356564 | Clytia hemisphaerica | exon |
| TCONS_00017526-exon-sc0000269-1575043694:356226..356564 | TCONS_00017526-exon-sc0000269-1575043694:356226..356564 | Clytia hemisphaerica | exon |
| TCONS_00017526-exon-sc0000269-1491911889:356817..357828 | TCONS_00017526-exon-sc0000269-1491911889:356817..357828 | Clytia hemisphaerica | exon |
| TCONS_00017526-exon-sc0000269-1510915933:356817..357828 | TCONS_00017526-exon-sc0000269-1510915933:356817..357828 | Clytia hemisphaerica | exon |
| TCONS_00017526-exon-sc0000269-1575043694:356817..357828 | TCONS_00017526-exon-sc0000269-1575043694:356817..357828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:356226..357828 + |
Blast
The following BLAST results are available for this feature:
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