TCONS_00017518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017518
Unique NameTCONS_00017518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017518 ID=TCONS_00017518|Name=TCONS_00017518|organism=Clytia hemisphaerica|type=transcript|length=1029bp
ACGAAGTGTGATTTAATTCAACTCGCCCTTTATTCACAGAGAACTAAATC
AATGAGAATTGTTTAAAAGACCATTGAAGATGTAGGATCTATTATTCATG
AGGTTGCCCCTTCTCAAAACCAAATGAACTTTTCATCGATTAATTATGAA
ATGACATTTTATACTTCAAgcagattgttttgtttttttctgactgtGAA
AAGGCTAACGGATAATATGAAGTGAATTTTGAGCAATAGCGAAAGGGGAG
AACAAAGCTAGctgaaaatgattaaatttgtcagtcaaaattgattttgc
tttgtatgaatttgataattttatttaaattgtTGGTTTATAATTTTGGA
AGGTTTTCACAGCCCAAAAAGattttaaaatgaCTGACGGTGATGCTCGT
GGATTTCTTATTCTTTGTGACACAAACCTGGAACGAAAGGTTGGTAATCT
GGTCAGTGATTTGAGTGAAGCAGAagaaattattatcaaaacaATCGAAG
ACGTCCCTAGCGCTCGAGGTGGCCCTGATTTCGGTAAACAATTGCAAACC
TTACTAAGTTGGGCACACGGAGTTATAATTGTGTCATCACAAAACTTGTC
CtcatttattgacaaaaagaagACCGACAACCTTCCCGCTTTATTGAAAA
CGAACTCTAAAGGAAGTCAAAAGGTGTTGGAAAAATTTCTTAAAGAGGAG
AGTAAGAAAGTTTTGCATAAACTAATCATCATTTCCGTTGATGGAGATAA
AACTTTACCAAAACATTTAGTTGGAAAAGTTGAAATTATCGAGAAAGGCG
GAGATGATAAGACAAAGTCAGATATATTTGTCAACAAAATTAAAAGCCAA
CTTGCCAAAAATATGAACAACATATGAGCTTAAATTTGCTAGTTATTGTT
AAAATGGATTTTGTTTATAGTGTAGTATAtctaaattttaatattttcat
cagtattttatttttattttcactaaatttaatAGCATCCACTTTTCTCT
TTTAATCAAGTGATTGTTCATTTCTCTCG
Run BLAST on NCBI

protein sequence of TCONS_00017518-protein

>TCONS_00017518-protein ID=TCONS_00017518-protein|Name=TCONS_00017518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MTDGDARGFLILCDTNLERKVGNLVSDLSEAEEIIIKTIEDVPSARGGPD
FGKQLQTLLSWAHGVIIVSSQNLSSFIDKKKTDNLPALLKTNSKGSQKVL
EKFLKEESKKVLHKLIIISVDGDKTLPKHLVGKVEIIEKGGDDKTKSDIF
VNKIKSQLAKNMNNI
Run BLAST on NCBI

transcript from alignment at sc0000269:261322..263338+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017518 ID=TCONS_00017518|Name=TCONS_00017518|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0000269:261322..263338+ (Clytia hemisphaerica)
ACGAAGTGTGATTTAATTCAACTCGCCCTTTATTCACAGAGAACTAAATC
AATGAGAATTGTTTAAAAGACCATTGAAGATGTAGGATCTATTATTCATG
AGGTTGCCCCTTCTCAAAACCAAATGAACTTTTCATCGATTAATTATGAA
ATGACATTTTATACTTCAAgcagattgttttgtttttttctgactgtGAA
AAGGCTAACGGATAATATGAAGTGAATTTTGAGCAATAGCGAAAGGGGAG
AACAAAGCTAGctgaaaatgattaaatttgtcagtcaaaattgattttgc
tttgtatgaatttgataattttatttaaattgtTGGTTTATAATTTTGGA
AGGTTTTCACAGCCCAAAAAGGTGAGAATTTGTTCTTGCAGTCTTCTTTA
GCTTACTTTGACCGGAGCAATAAGGCCAAAAAACATATCATAATTTGTTA
GTCAATATTCTGTTGATATGATTCACTTTATATTACAAAATGCCGTGCTC
TTTTCATATTACTGTTTATCTATAGCTGGTATTGAAGCTTAGTCTACTAA
CATTGCCAGTTTATATATATACAGTCTATCAACTTTCAGAATATGGGTCC
TGAATAGTTTCTCACACCTCTTATTATAATTATAagtaattttgaaattc
tttctaTCACCGAATTAACTTTTAGCCGTTCTTGTAGCTTAGTCTAAGTC
TGAACTGAACAGTAATTTTTGGAATCCTGGATTCGACTGCACAATTTTTT
GGTCCTAACCAATCCCTTGGCTATCGTTGGTCACTGATTCAGTGACGATG
TCATGTCAAGTTATTGTTATTTATGCATTATTTTTCCACAAGGTGAAAGA
TATTCGAATTTCAGCTCGATTAGACTAagagctttttaaaaaatattttt
caagtctcTTGATCTGCAcgataattattttttatgataaGGTTTTTGTC
GATTATACTATTAcggctttagaaaaaattatagcttaaaaacaaattaa
aatttccttgcaaaataaataatttatcGAATTTCAGACAGTTTTAACAA
AAGTTAAaggaaagaaggaaaaaaactgTAAATTTATCAGATAAGAAGAT
GCGACATATGTGACTTCCTAAATCaatcatttaaaaattcaaaacttaaa
attcaaaatttatttctcgAATGCTACCAGATGTGCAATTTATAATCTGC
TCGAAAAAGACTTTCTACAGGTACAACTACAAGCAATTTTTAGCTTTGTT
CACTCTTACACCTTTCGTGGTCCGAGTGAGTGGGTTTTCTTAATGTCCAG
GTTAAGCAAGCTCTTGATAAACTTGACTGGAtttaagttttcaatttctt
aattttcagattttaaaatgaCTGACGGTGATGCTCGTGGATTTCTTATT
CTTTGTGACACAAACCTGGAACGAAAGGTTGGTAATCTGGTCAGTGATTT
GAGTGAAGCAGAagaaattattatcaaaacaATCGAAGACGTCCCTAGCG
CTCGAGGTGGCCCTGATTTCGGTAAACAATTGCAAACCTTACTAAGTTGG
GCACACGGAGTTATAATTGTGTCATCACAAAACTTGTCCtcatttattga
caaaaagaagACCGACAACCTTCCCGCTTTATTGAAAACGAACTCTAAAG
GAAGTCAAAAGGTGTTGGAAAAATTTCTTAAAGAGGAGAGTAAGAAAGTT
TTGCATAAACTAATCATCATTTCCGTTGATGGAGATAAAACTTTACCAAA
ACATTTAGTTGGAAAAGTTGAAATTATCGAGAAAGGCGGAGATGATAAGA
CAAAGTCAGATATATTTGTCAACAAAATTAAAAGCCAACTTGCCAAAAAT
ATGAACAACATATGAGCTTAAATTTGCTAGTTATTGTTAAAATGGATTTT
GTTTATAGTGTAGTATAtctaaattttaatattttcatcagtattttatt
tttattttcactaaatttaatAGCATCCACTTTTCTCTTTTAATCAAGTG
ATTGTTCATTTCTCTCG

Coding sequence (CDS) from alignment at sc0000269:261322..263338+

>TCONS_00017518 ID=TCONS_00017518|Name=TCONS_00017518|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000269:261322..263338+ (Clytia hemisphaerica)
atgaCTGACGGTGATGCTCGTGGATTTCTTATTCTTTGTGACACAAACCT
GGAACGAAAGGTTGGTAATCTGGTCAGTGATTTGAGTGAAGCAGAagaaa
ttattatcaaaacaATCGAAGACGTCCCTAGCGCTCGAGGTGGCCCTGAT
TTCGGTAAACAATTGCAAACCTTACTAAGTTGGGCACACGGAGTTATAAT
TGTGTCATCACAAAACTTGTCCtcatttattgacaaaaagaagACCGACA
ACCTTCCCGCTTTATTGAAAACGAACTCTAAAGGAAGTCAAAAGGTGTTG
GAAAAATTTCTTAAAGAGGAGAGTAAGAAAGTTTTGCATAAACTAATCAT
CATTTCCGTTGATGGAGATAAAACTTTACCAAAACATTTAGTTGGAAAAG
TTGAAATTATCGAGAAAGGCGGAGATGATAAGACAAAGTCAGATATATTT
GTCAACAAAATTAAAAGCCAACTTGCCAAAAATATGAACAACATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009796XLOC_009796Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017518-proteinTCONS_00017518-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017518-exon-sc0000269-1491911889:261322..261692TCONS_00017518-exon-sc0000269-1491911889:261322..261692Clytia hemisphaericaexon
TCONS_00017518-exon-sc0000269-1510915933:261322..261692TCONS_00017518-exon-sc0000269-1510915933:261322..261692Clytia hemisphaericaexon
TCONS_00017518-exon-sc0000269-1575043694:261322..261692TCONS_00017518-exon-sc0000269-1575043694:261322..261692Clytia hemisphaericaexon
TCONS_00017518-exon-sc0000269-1491911889:262681..263338TCONS_00017518-exon-sc0000269-1491911889:262681..263338Clytia hemisphaericaexon
TCONS_00017518-exon-sc0000269-1510915933:262681..263338TCONS_00017518-exon-sc0000269-1510915933:262681..263338Clytia hemisphaericaexon
TCONS_00017518-exon-sc0000269-1575043694:262681..263338TCONS_00017518-exon-sc0000269-1575043694:262681..263338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:261322..263338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0865311	0.0421907	0.0489875	0.0958532	2.21715	1.89034	7.39808	8.95693	9.00538	8.85144	8.37225	7.54943	12.3731	8.36714	10.7606	12.4706	19.4551	16.9447	11.4061	11.9356	8.99379	8.93694	14.3862	15.9655	15.0041	14.9247	56.3594	43.56	3.84171	2.49524
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000157TIR_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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