TCONS_00017498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017498
Unique NameTCONS_00017498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017498 ID=TCONS_00017498|Name=TCONS_00017498|organism=Clytia hemisphaerica|type=transcript|length=2389bp
CGAATTTGGAAGCCGGTTTACCGGACAAAACCTTATAAACGCCATAAATC
GTGTGCCGGTAAATTTGAAACCTTGCAAGTGATCTTGCCCGCCAATATGG
CGTCAAAGTTGAACACGATtttcaaaagaatcttcaaagATCACTGATAT
TCTGGCTtcttttggttgttttctttattGCATGGTTTGTCCTTATTATT
TTTCACTCTTTGATTACTATGGCTGGTTTTGAAGAGTCCGGTTTACCTGG
GGAAAAGTCGATTTGCGAAGGATTTCAAGGAGCATCTGAACCCGAAAGTT
TTATTACACAGTTTCAACaagaaaattgtattttgttGACTTCATTGGCT
CCTGCACTTCATCTCCTGGACTTACAAGATGTCAAAAGAGTTACATTCCA
CCAAACTGTAGTGAACGATTTGtttgaaaagctgaagaaaCGAATTGGTG
AGCTAAACAACAATGATGAAGAAAAACTTTCTGAACTTTTGGatcatatt
tttcattttattcatgTTGATGTATTACGACCCATTGTTATGGATACTAT
GAAAAAGACTAAAAATATCAAACCAGAGTATATTGAGCAAATAGCGAGCC
ATGAAAAGATATATAAAGATTGCCCAATTGAAGTTAAAAGAAGGGTTTGG
ATGAACAACCATCCAATGTTTGGGGATGCTGTTGGGCCAATCCTTAATAA
ATATATTGAAGAAAAGAATAAGATATTGTTTGATATTGAAACAGtgaaaa
tcaaatcattttATAATATACCACCACGTCAAAGGAGGCAGAAAGCTGTC
ATAAAAGAACTTGTTGATATGATTGGTGGATCTATCGAACTTTATAATTT
AGTGTTACAATTTCTAAGAACTCTATATTTGCGAACAAAAGAAGAGCACT
ATTGCTCTCTACGTGGTGAACTGTTAATGGCTTTTCATGACGCTGACATA
AAAGAGATTCGTCAAGTAGACCCTTGTCACAAGTTTGCATGGCTTCTAGA
TGCCTGTATTAGGGATAAGAGTATTGATACCAAACGTTTAAAAGAACTTC
AATCATTCTTGGATAGCATGAAAAAGACTCAAGAAGAAATTTTAGGGGAT
ATTGGTATGATCTTGTGTGATCCATATGCAACTTACACAATCGTACAAAG
TATTATTCAGCATATTGACAGACTCATGAAAGCAGAACAACTACCGCGTt
cGTCAAATGATCTAGCATTTCTGGTGAGGTTACTACTCTTGAGTGTTCAT
TCCTGGAATATGTTAAAAAATCAAGACTTCAAGGAAGATCCAATCAACAT
TGATATTAtcacaaaatttcttccaatgATTATCTCCTTGATGCTGGACA
ACACTTCATCCATACAAACTATCACATCTGATGCCATCAAGTTGCCAGAT
TCTTTGTGGAAAATGGTGGAAACAAACCAAGCTTGCCAAtgcattttttc
tttctttgtcaACCAACTCATCATGCATAATAAAAAGTATATTCTATCAG
GTGTTTTACCTGGGTTTGCAACCGCTTTGAAAAACCAGCCAATCAGTGCA
ACGGTTGGCAACTTGTTTGTTCATTCCCTCTTACGACATCAAGAAGCTTT
CACGGACACATCACACTGTAAACTAATATTCGATCAGTTTCTAATGACTT
GGGTGCAATATGAGGAAGTTCTTCATCACATTCTACGGCTTTTATGGTGT
GCTTATGAAAAGATTGATAGTCAGCTGTTGGTGGCCATTCTAACTGCCGC
ACAGCCTGCACTACAGCATTCGGATGCAGTGCACGATGTCCATGCCAGGT
TGGTGGATATGATAGCATCATGGAAAGTGAATACACCTTCTGGATCAAGC
AATACTTCATCCCCTGCCCTCTCTATTTCTCCTGTCGTCTCGCCTGGTCT
CACTGTCCCATGATACACTCAAACTAATCTTTTAAAGaaccttttttttt
aagtttaagaGTTTCATTCAATTTGGGGTTTTTGCTATATCACACACTCG
TGGATCCTTTGTGTAGGTAGTTTTTTCAATGGATCTTGGTCTCAGTGGTT
TTTTGAGCTCTCAGCAGTCCACTAAAACTTACTTGTCAGGGATAGGCAAG
TCAATGTTCCAAAATCTATCTCGTGAAATCCTGGGTTTGGTTTTATAATG
CAGTGTTAGGTTTTAGGTTccaattttaaagaatttatgAAATTAGGGAA
GGAATTTATATTAAATTTGACTTCGTAAACATATTAGGATAGATattttt
atggaatttttatGAAGGCTTTATAGTTTTGCTTGTttattcaaaacatt
cgaattttgtccacttttttgattcatttttgtaaatatttcaaaagtca
atGTTGTGAATAAATGAACGCCGTTTATGTTTTCTTGAT
Run BLAST on NCBI

transcript from alignment at sc0000269:192489..204825+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017498 ID=TCONS_00017498|Name=TCONS_00017498|organism=Clytia hemisphaerica|type=transcript|length=12337bp|location=Sequence derived from alignment at sc0000269:192489..204825+ (Clytia hemisphaerica)
CGAATTTGGAAGCCGGTTTACCGGACAAAACCTTATAAACGCCATAAATC
GTGTGCCGGTAAATTTGAAACCTTGCAAGTGATCTTGCCCGCCAATATGG
CGTCAAAGTTGAACACGATtttcaaaagaatcttcaaagATCACTGATAT
TCTGGCTtcttttggttgttttctttattGCATGGTTTGTCCTTATTATT
TTTCACTCTTTGATTACTATGGCTGGTTTTGAAGAGTCCGGTTTACCTGG
GGAAAAGTCGATTTGCGAAGGATTTCAAGGAGCATCTGAACCCGAAAGTT
TTATTACACAGTTTCAACaagaaaattgtattttgttGACTTCATTGGCT
CCTGCACTTCATCTCCTGGACTTACAAGATGTCAAAAGAGTTACATTCCA
CCAAACTGTAGTGAACGATTTGtttgaaaagctgaagaaaCGAATTGGTG
AGCTAAACAACAATGATGAAGAAAAACTTTCTGAACTTTTGGatcatatt
tttcattttattcatgTTGATGTATTACGACCCATTGTTATGGATACTAT
GAAAAAGACTAAAAATATCAAACCAGAGTATATTGAGCAAATAGCGAGCC
ATGAAAAGATATATAAAGATTGCCCAATTGAAGTTAAAAGAAGGGTTTGG
ATGAACAACCATCCAATGTTTGGGGATGCTGTTGGGCCAATCCTTAATAA
ATATATTGAAGAAAAGAATAAGATATTGTTTGATATTGAAACAGtgaaaa
tcaaatcattttATAATATACCACCACGTCAAAGGAGGCAGAAAGCTGTC
ATAAAAGAACTTGTTGATATGATTGGTGGATCTATCGAACTTTATAATTT
AGTGTTACAATTTCTAAGAACTCTATATTTGCGAACAAAAGAAGAGCACT
ATTGCTCTCTACGTGGTGAACTGTTAATGGCTTTTCATGACGCTGACATA
AAAGAGATTCGTCAAGTAGACCCTTGTCACAAGTTTGCATGGCTTCTAGA
TGCCTGTATTAGGGATAAGAGTATTGATACCAAACGTTTAAAAGAACTTC
AATCATTCTTGGATAGCATGAAAAAGACTCAAGAAGAAATTTTAGGGTAA
AAATGCTTCCCCAGTTTTTTACAATATATTTCAAAGCCTGGAAGCCATCT
ACAACTACCATAACTTGGTTTAATGTCGACAATTATGATACCTCNGTCCG
GTTTACCTGGGGAAAAGTCGATTTGTGAAGGATTCCAAGGAGCATCTGAA
CCCGAAAGTTTTATTACACAGTTTCAACaagaaaattgtattttgttGAC
TTCATTGGCTCCTGCACTTCATCTCCTGGACTTACAAGATGTCAAAAGAG
TTACATTTCACCAAACTGTAGTGAATGATTTGtttgaaaagctgaagaaa
CGAATTGGTGAGCTAAACAACAATGATGAAGAAAAACTTTCTGAACTTTT
GGatcatatttttcattttattcatgTTGATGTATTACGACCCATTGTTA
TGGATACTATGAAAAAGACTAAAAATATCAAACCAGAGTATATTGAGCAA
ATAGCGAGCCATGAAAAGATATATAAAGATTGCCCAATTGAAGTTAAAAG
AAGGGTTTGGATGAACAACCATCCAATGTTTGGGGATGCTGTTGGGCCAA
TCCTTAATAAATATATTGAAGAAAAGAATAAGATATTGTTTGATATTGAA
ACAGtgaaaatcaaatcattttATAATATACCACCACGTCAAAGGAGGCA
GAAAGCTGTCATAAAAGAACTTGTTGATATGATTGGTGGATCTATCGAAC
TTTATAATTTAGTGTTACAATTTCTAAGAACTCTATATTTGCGAACAAAA
GAAGAGCACTATTGCTCTCTACGTGGTGAACTGTTAATGGCTTTTCATGA
CGCTGACATAAAAGAGATTCGTCAAGTAGACCCTTGTCACAAGTTTGCAT
GGCTTCTAGATGCCTGTATTAGGGATAAGAGTATTGATACCAAACGTTTA
AAAGAACTTCAATCATTCTTGGATAGCATGAAAAAGACTCAAGAAGAAAT
TTTAGGGTAAAAATGCTTCCCCAGTTTTTTACAATATATTTCAAAGCCTG
GAAGCCATCTACAACTACCATAACTTGGTTTAATGTCGACAATTATGATA
CCTCcataccttttttcaaagaggccaccctgttgaataattatgtagtc
cagcagaaaaacaatgataaaaccatgcataattattacaatatgcatga
tacagtaattatgcatggctctatcattgtttttatggctggactacata
attattcaagaGGACGtcctatttgaaaaaaaggtctatttctatttcta
tccatttatttgcataagcccagacgatgtcaatcgaacaaatcgaatgc
cgaatcaattgaacgcaattgaacacaatcgaataattgcaattcgattg
tcgaacgcaatcgaactgtaatcgaatattacctaggatttgccgttcga
ttgcttcgattacgttcgattgtattcaatTATGTTTNCATTTTATTCAT
GTTGATGTATTACGACCCATTGTTATGGATACTATGAAAAAGACTAAAAA
TATCAAACCAGAGTATATTGAGCAAATAGCAAGCCATGAAAAGATATATA
AAGATTGCCCGATTGAAGTTAAAAGAAGGGTTTGGATGAACAACCATCCA
ATGTTTGGGGATGCTGTTGGGCCAATCCTTAATAAATATATTGAAGAAAA
GAATAAGATATTGTTTGATATTGAAACAGtgaaaatcaaatcattttATA
ATATACCACCACGTCAAAGGAGGCAGAAAGCTGTCATAAAAGAACTTGTT
GATATGATTGGTGGATCTATCGAACTTTATAATTTAGTGTTACAATTTCT
AAGAACTCTATATTTGCGAACAAAAGAAGAGCACTATTGCTCTCTACGTG
GTGAACTGTTAATGGCTTTTCATGACGCTGACATAAAAGAGATTCGTCAA
GTAGACCCTTGTCACAAGTTTGCATGGCTTCTAGATGCCTGTATTAGGGA
TAAGAGTATTGATACCAAACGTTTAAAAGAACTTCAATCATTCTTGGATA
GCATGAAAAAGACTCAAGAAGAAATTTTAGGGTAAAAATGCTTCCCCAGT
TTTTTACAATATATTTCAAAGCCTGGAAGCCATCTACAACTACCATAACT
TGGTTTAATGTCGACAATTATGATACCTCcataccttttttcaaagaggc
caccctgttgaataattatgtagtccagNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaacgcaatcgaacacaatcgaata
ttacccaggaattggccgttcgattgagattcgattacgttcgacaatcg
aatcgcaattattcgattgtgttcgattacgttcgattggtttgattgcg
atttttgttcgaagttgttcgattgacaccgtctgaataagcctaaaaaa
gctaacactgcaaatatttaacaaaagacttgtttatgaaaataaaaagt
tttggacCCATACTTCAGTGGATGCAAATAAAAAAACCAGGGGGAAATAA
GATATTACCTTTAAATAAGCTTTGTTTAAATTGACACGCTAACATTCTCC
CTAATTAGCACCAATAACACTGCAAATCTTCTGCAAAACGTGCTATAAAG
TATTAGGGTTTTGTTTTCGTGATACAAAGCATATAATTTCCGGCCCAAAT
GGCTGGAGTAGTTTAATATATATGGAGCAGAGTGGACTGAGTCAATAGGT
CATTGCGTTCTCCCAAATGATTACAGCAAGAGATCTCTCTGATAGCAAAG
AATTATAATttctatcagtgattctgactGCTCTATCATCCCCAACTCTA
AAGAAGGTTGTTGAATTTAGATGAAGGATGTCGACAATTGGCCCAATTCA
GTACAGTCTAGACTTTTCTACTTCAGATTGGACTCTTCCAAAAAAGGGTT
AATTTAGGGGTTTTGACAAGAATTTTCACATTCCCTACATGGAAATTTCG
AACAACAAATTATCCATTGGAAATCTAGGACAAGACCCCTGGAATTTCAA
ATTGTGTGAAAAAGAGGCCTAAAAATAACTACTGTATATACTGATCTCAG
CTTTTGAGAAGAGAACACAACCCTGGAAACCTACAATAACCCCTTTGGAA
ATCAAAGATTTGACCCTTGGAAAAGTTTATTTATACCCCTGTATGGTTGG
GAATGGATTGGAATGGCCCATTTTATAAAGGAAAGTAAGCCTGAACAGGT
CTCTTATTGTTAAAATGTAAACTGAAGCACaactaaaaattaaaactagt
caaaattcttgaaatcctaattttttggaaaaactgcCCAAAGTACTGAA
TGTCTCAAAATCatcgggtgcatgtcactagtccgacactttctagtccg
acagtaaaatagtccgaatctataaaataatttagaatttagaagtcttt
ttttccgatgtcACTTTTGTccaaaaacgaaagattttacagtgtcgaat
gttgaataagggtttttttactgagataatattaataaaagttcattttg
gcattttgacataattagaaataaaggaccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAATTAtgaagcttcccaaaa
tttaagaaaagttgggtttaggggcccaacctcaaagtcggaactttgga
tttttataagcacgtggctgcttataaaagatgtgcctccttttcggcga
ttcatatttcgttttacatgttttttttttactcgttacgttgtcggaca
aaattgttgtcggaatactgacgcattcgtcaaatccaacgtcggacatt
tttactgtcggactagaaagtgtcggactactgacgacctcccaaaTCAT
CTGCCTTGGGGTGTAGTAGGgcgaaatttgttcgttttttttttaggtcg
ctcgatttttttagtcaaagcagtTGTTAtacaagtataggtgatttctg
tacctaactcgagNtcattttgatatggataccaactttctgaatcatat
tatttaaaaaaaggggtacccaccccctattttggtatcaataccaactg
ggGATagctctttttttctaaaaaaagggggacccacccccatcaatacc
aacttgacttttcagacttttaaaggaaaaaaagacaccaccaccccgct
atgggtctggtatctggatgttgacccccccctgNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcaaactatt
gaaaatagtttgtttacattttctctccgtcatataagacatttcccggg
atttaaaggcgtctttaaggcggtagggcggcttttcttaaGACCGCacg
aaaaacgtatatttacggcttcggctatatattagaacgtaaatttacgg
cttcggcgtggtaaaggttaaccCTTAAAAACGGTGTTTTTCAGCAagaa
cagctgttttgtccagtttttgcgctttttggagctcaatatctcgactc
acaatatatctctaatcttaattttttgagagctttccaaaaatgtacaa
CAGGTCTCTATTTTctaaagctaaaattttcattaatttttgaccctata
atttttgcctgagaccatcATATTNataaattaaccgttgtatgttcgtt
cgttcgttcgttagttaccagcttttctcgagattggctcattagttttt
tctgattttttgcacaaagatgcataactatataaaccctcgaatgtgac
ggagcccgattttcgaaagaaaatttttttgggcaaatttgggccaaaaa
acggctaaaaatcggggttttttgactttgtgaaaaattggatcattaat
tttttctgattttttgtatgaaagtagggtaccatcataggtaaaagatg
gctcaagcagatttttgcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtttttggctcaaaaaacgcatgtttatcta
taagaatcactattaataagcatacatcaatgttcttagtcaaattactc
aattatttttatgagatagatgtattttttgctcatgagggcttactttt
gaagaatatatgtgtttagacatgaacctttggttgcttggcgtgttttt
gtagaaaaactggccaaattcaatatttttttataagcacattatcaatt
acttaggtattagcttttctcgagattgcctgtttcattctttattattt
tttgcacaaagatgcgcaactataaaccctcgaatgtgacggcgcccgat
tttcaaaaacaaatgtttttgggcaaatttgggccaaaaaatggctaaaa
aacgagttttttggactttaaaaaattgaatcattaaaaattttttctaa
ttttttaaatgaaaataggtaaaagatggctcaagcagatttttgtaaaa
aacgaatttttcagctcaaaaaacgcatctttatctataagaatcactat
taataaacatacatcaatgttcttagccaaattactcaatatttCGATGA
GATCGAtgttttgctcacgaagtcttgaatatgaaaaaatatttaaatag
agcatgaaattttggtttctaaacggtttttataagaaacaaacgactaa
ttttaatagatcatcactatttgtgttctgaatgattgtttaatggtcgg
TCACattcacgtagatatcaattatatatgtgttaaatgcataaccaggt
aggtccataaaagtatcacttgttaataagaacattcaaaacaaGCTTTT
GAATGCTTAattaaaaagtttcttaaaatgttcttattttcaccatgagt
attttttgccattttcccaaaaaatggGGCTGTTTAGAGTCCaacaagcc
ttaaaattttctttacgTGTTCTTAATAtcttggccattgaagccttatg
ttctttttggacctaccccggtggggtagaggtcctataaattaaccNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNActagtt
tttgctgattttttgctcaaagatgcgtattaacaatgcccaaatcattg
ccgagtccgatttttgagaaaaagatttttccggccgaaaatgcccgaaa
tatgccggaaatcgccgtttttgcagatttgaattgggctttttccatac
atttctttgttttttcacttaaaaaaatgtttgataacaatgccaccatc
aagcatgattcaattgtcaataaaacttttgcaattttgcaaccggaact
ttctatttcttttttccctaaacccctcccccccatcaacaatcaatgNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgcattttcgctaag
cgctatattttcttaatgattttttttctccttattgctatctaagtttc
atcatcaggtaggtccattcagcatgttgcttgtatagtttgttcttagt
ACAAGAACAGCCAGCGGTGGTGGGCCAATGCCCAAAAATCTTATTTCTAT
TATAACATAAACGAATCTTTTTAACAGGGATATTGGTATGATCTTGTGTG
ATCCATATGCAACTTACACAATCGTACAAAGTATTATTCAGCATATTGAC
AGACTCATGAAAGCAGAACAACTACCGCGTGTAAGTAATATTTCTTGTTT
GATGTTTTTGGATTAgagcttttttgagttttatgatGTAAAACTGACCA
TATTGTTTTTTCTTGGCACGTCTGTTTATCGGAAAAAACAGTAGGAAAAG
TCCCCATTTTGTTCCCTTTTTGTCCCCAGTGGGCAATACTGTaccttgat
tttctaaattaagTCCAGCTTACCCAAATGTNTTTGTCCCCAGTGGGCAT
TACTGTACCttgtttttctaaattaaaGTCCAGCTTACgcaaatgtttgt
ttttttttcataaaaaatgaaaatctagaatTCTTCAATTTATATACAGT
ATCAAATGAATGAAACCATGTTAccattatttctttaaagtcGTCAAATG
ATCTAGCATTTCTGGTGAGGTTACTACTCTTGAGTGTTCATTCCTGGAAT
ATGTTAAAAAATCAAGACTTCAAGGAAGATCCAATCGTAAGTTTGCTTGA
TATTATATATACTATATTATTACTTTTGTCAGTGTTTTGGCTAAGAATAG
AAGAAGAAATCACTAAATTTGTAAATCTGTTTAAGAGTCTGTTGTATTAA
AGGAAGCAATATTTAAAGACCTATGAAAGGAAAATTTGGCCCCATATTGA
TCAACATTTCGAACTGTTTTACTTTCCCAACAGAACATTGATATTAtcac
aaaatttcttccaatgATTATCTCCTTGATGCTGGACAACACTTCATCCA
TACAAACTATCACATCTGATGCCATCAAGTTGCCAGATTCTTTGTGGAAA
ATGGTGGAAACAAACCAAGCTTGCCAAtgcattttttctttctttgtcaA
CCAACTCATCATGCATAATAAAAAGTAAGATACTAACTTTTAATATTTGC
TTTAACACGAATTGCATATTGTTCAAGTCCATTACATCTCCCCAAATCAA
GTTTCACATTattcatttcaaatcaaatttcgATAGATGATAAGGGTTGT
TGTTCGAAAATTACtgactttaaaatattttcaactcctcttttccaatt
tttttccctCTTTATAGGTATATTCTATCAGGTGTTTTACCTGGGTTTGC
AACCGCTTTGAAAAACCAGCCAATCAGTGCAACGGTTGGCAACTTGTTTG
TTCATTCCCTCTTACGACATCAAGAAGCTTTCACGGACACATCACACTGT
AAACTAATATTCGATCAGTTTCTAATGACTTGGGTGCAATATGAGGAAGT
TCTTCATCACATTCTACGGCTTTTATGGTGTGCTTATGAAAAGATTGATA
GTCAGCTGTTGGTGGCCATTCTAACTGCCGCACAGCCTGCACTACAGGTA
AATATTTCTCTTTAGATTTCAAAGAATTCATCTTCCATAGTTTTTCAAAT
ATATGTATGATTATTTGGTGATGgaattttgatataaaaagaAGAGACAA
ATCTTTATAATAATTATTATACCTCATACGTCaaccatttcaaaatttcc
taggAGATTCAAAATTGAATGACATAGCTTTATATTTCTCGAAACTTAAC
ATATAtctaaattacaccaaccctgaAATGACCtctaaaatttttcattt
aaccTTTTTTTCAGCATTCGGATGCAGTGCACGATGTCCATGCCAGGTTG
GTGGATATGATAGCATCATGGAAAGTGAATACACCTTCTGGATCAAGCAA
TACTTCATCCCCTGCCCTCTCTATTTCTCCTGTCGTCTCGCCTGGTCTCA
CTGTCCCATGATACACTCAAACTAATCTTTTAAAGaacctttttttttaa
gtttaagaGTTTCATTCAATTTGGGGTTTTTGCTATATCACACACTCGTG
GATCCTTTGTGTAGGTAGTTTTTTCAATGGATCTTGGTCTCAGTGGTTTT
TTGAGCTCTCAGCAGTCCACTAAAACTTACTTGTCAGGGATAGGCAAGTC
AATGTTCCAAAATCTATCTCGTGAAATCCTGGGTTTGGTTTTATAATGCA
GTGTTAGGTTTTAGGTTccaattttaaagaatttatgAAATTAGGGAAGG
AATTTATATTAAATTTGACTTCGTAAACATATTAGGATAGATatttttat
ggaatttttatGAAGGCTTTATAGTTTTGCTTGTttattcaaaacattcg
aattttgtccacttttttgattcatttttgtaaatatttcaaaagtcaat
GTTGTGAATAAATGAACGCCGTTTATGTTTTCTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009793XLOC_009793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017498-exon-sc0000269-1491911889:192489..193584TCONS_00017498-exon-sc0000269-1491911889:192489..193584Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1510915933:192489..193584TCONS_00017498-exon-sc0000269-1510915933:192489..193584Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1575043694:192489..193584TCONS_00017498-exon-sc0000269-1575043694:192489..193584Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1491911889:202516..202618TCONS_00017498-exon-sc0000269-1491911889:202516..202618Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1510915933:202516..202618TCONS_00017498-exon-sc0000269-1510915933:202516..202618Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1575043694:202516..202618TCONS_00017498-exon-sc0000269-1575043694:202516..202618Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1491911889:202979..203074TCONS_00017498-exon-sc0000269-1491911889:202979..203074Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1510915933:202979..203074TCONS_00017498-exon-sc0000269-1510915933:202979..203074Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1575043694:202979..203074TCONS_00017498-exon-sc0000269-1575043694:202979..203074Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1491911889:203272..203462TCONS_00017498-exon-sc0000269-1491911889:203272..203462Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1510915933:203272..203462TCONS_00017498-exon-sc0000269-1510915933:203272..203462Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1575043694:203272..203462TCONS_00017498-exon-sc0000269-1575043694:203272..203462Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1491911889:203656..203935TCONS_00017498-exon-sc0000269-1491911889:203656..203935Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1510915933:203656..203935TCONS_00017498-exon-sc0000269-1510915933:203656..203935Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1575043694:203656..203935TCONS_00017498-exon-sc0000269-1575043694:203656..203935Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1491911889:204203..204825TCONS_00017498-exon-sc0000269-1491911889:204203..204825Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1510915933:204203..204825TCONS_00017498-exon-sc0000269-1510915933:204203..204825Clytia hemisphaericaexon
TCONS_00017498-exon-sc0000269-1575043694:204203..204825TCONS_00017498-exon-sc0000269-1575043694:204203..204825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:192489..204825 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3497	16.9396	6.78164	5.25766	45.8942	35.9893	38.8588	39.7326	31.1162	28.5394	26.9677	27.9813	23.4654	22.8601	28.172	33.0365	38.7815	34.5574	8.68061	12.6931	27.4634	28.4475	31.1936	34.8531	57.1435	65.008	19.8402	16.6263	21.0616	20.8485
Blast
[Close]
BLAST of TCONS_00017498 vs. Swiss-Prot (Human)
Match: NELFB (Negative elongation factor B OS=Homo sapiens GN=NELFB PE=1 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 3.434e-112
Identity = 206/549 (37.52%), Postives = 326/549 (59.38%), Query Frame = 3 
Query:  222 AGFEESGLPGEKSICEGFQGASEPESFITQFQQENCIXXXXXXXXXXXXXXQDVKRVTFHQTVVNDLFEKLKKRIGELNNNDE-----EKLSELLDHIFHFIHVDVLRPIVMDTMKKTKNIKPEYIEQIASHEKIYKDCPIEVKRRVWMNNHPMFGDAVGPILNKYIEEKNKILFDIETVKIKSFYNIPPRQRRQKAVIKELVDMIGGSIELYNLVLQFLRTLYLRTKEEHYCSLRGELLMAFHDADIKEIRQVDPCHKFAWLLDACIRDKSIDTKRLKELQSFLDSMKKTQEEILGDIGMILCDPYATYTIVQSIIQHIDRLMKAEQLPRSSNDXXXXXXXXXXSVHSWNMLKNQDFKEDPINIDIITKFLPMIISLMLDN---------TSSIQTITSDAIKLPDSLWKMV-ETNQACQCIFSFFVNQLIMHNKKYILSGVLPGFATALKNQPISATVGNLFVH------SLLRHQEAFTDTSHCKLIFDQFLMTWVQYEEVLH-HILRLLWCAYEKIDSQLLVAILTAAQPALQHSDAVHDVHARL 1802
            AG ++ G+   + + E     +EP   I QFQ EN +LL SL  AL  LDL    R+ FHQ+V ++L +KL +R+  + +  +     +KL +LL+  F  + +  L+P+VM  MK    +  + ++ + + +++Y+ C +EVKR++W +N  +FGD V P+L +YI EK   LF  E   + +F++  P+ RRQ  V++ L  M+G +++LY++VLQFLRTL+LRT+  HYC+LR ELLM+ HD D+ EI  VDPCHKF W LDACIR++ +D+KR +ELQ FLD +KK QE++LGD+ MILCDP+A  T+  S ++H+  L+  E LPR S DL  L+RLL L   +W+M+ +Q FKE  + +++IT+FLPM++S ++D+          +  +   S    LP+S  K + E   AC+    + ++     NK  +L  +LPG      +       G++F+H      +LL  + A  D   C  +FD F +T    +E +H H LRLL   + ++    L A+  A +P  Q  +AV +++++L
Sbjct:    3 AGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVGEICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLALSTVRHLQELVGQETLPRDSPDLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELITRFLPMLMSFLVDDYTFNVDQKLPAEEKAPVSYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLR-LLPGLVETFGD----LAFGDIFLHLLTGNLALLADEFALED--FCSSLFDGFFLTASPRKENVHRHALRLLIHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQL 544
The following BLAST results are available for this feature:
BLAST of TCONS_00017498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NELFB3.434e-11237.52Negative elongation factor B OS=Homo sapiens GN=NE... [more]
back to top