TCONS_00017487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017487
Unique NameTCONS_00017487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017487 ID=TCONS_00017487|Name=TCONS_00017487|organism=Clytia hemisphaerica|type=transcript|length=1796bp
aatttttttatttcaaaacgaggcaagtgttgttcgtgacgtaatttatg
aaaaggtctatacccAAACAAAATTGGTTGATTGTAGCGAAATTTATTGG
TTGAATGTTTTTGCATATGAGATAATGTCGTATTTGTGGAAATCGAAGTA
TTTTGTAATGGCAGTGAATAAATTGTTCCTGTGTTAATCCCAATTTACTG
ACAGTAATCACAATATTACCAAACCTTTATATTGTTCAATAGTATCCTCT
TTCAACGAGGTTTATATCCTATGGAATCGTTCGATCGCAAGATTGCTTAC
GATGTGCCCGTTTTCGTTTCTACCAACACTGATTTGAATGATTATCTACA
CAAGTTCATCGAACAAATGAAAGATTGGTTAGTAAAGAAGACGATTCAAA
GGATTGTATTGGTGATCACTTCAGTTGCCAAGAAAGTGGACGTTGAACGG
TGGACATTCAACATCGAATGTGATAAAACTGCTAATGAAACCACGGAACA
GACGACAAAACCAGTAAAAGAGGTTCGTAAAGAAATGCAAGCAGTCATCA
AACAAATTGTGTCAACAGTCACCTTTCTACCTTATCTCGATGAAAGATGC
ACGTTCGACTTGTTAGTGTACACAGATGCGGACAGCGAAGTACCAGCTCT
TTGGGAAGACGGAGAGGAACATTACATTTCGAACGCCGAAGAAGTCAAAC
TAAAATCCTTCTCAACTTTGCTTCATAAAGTTGACATGGCTGTATGCTAC
AAAGTCTCATAATAATGAACAATTTTTTgttattctcatttttgattaga
AGCATCAACTTATCAAAATTATGTTTGAGAGTTCTAAACGACTGTTCAAA
AGTGCCTGTGTAGTTCTTTGATACAATggcaaatcattttcaaaaacttt
taacaacGACTTTGAATTCTCTCATATGATACACTCTAAGAATATTATGT
GGCTTTCATTACATATAGCAAAGAATAGACTGAGACGAGCAATTTAAAAA
ATGAGCATAatggaggagtgtactttccattcatgtttcaatgaatagga
tctcctccacagatcacattttacaaactactcgtctcaggcgatttttc
cgtctcagtataaatggaacttttccaaaaaaattgatgaaacttTTAAC
TAACAGGTTGTTGTTGCAAGTAATCGCTCAAACGGTAAGACTATAATTAG
ATTGtcaacattgagtttcaagccagaagggctagaggcgagactcctat
atgggaaatgaaaccacttatttcccatccagaacgcccgcgcgtagttt
ttacacaaacgccggcaactaaaatctatcgctagaatttaaaaaaatgt
agtcctccaaaacaaaggaatcgctagatACAATCCCCCGTCgagattac
ggcgcgttctatgcgtgttttggatgggaaataagtggcttcaatttctc
ttgccttaGAAGGGTTCAAGTTtcgcccttcgggcttgaaactcaacgAT
TGTCAAGCTTTTAGCCTAGGGAGATTTTCTAGCATCGGTTATTTTTAAAC
TCTGAGGTTATGGACTTACATGGCATTATTGTATGATGTCATTTTAAAAG
ATATCCTTTTCTGACTTGtcaaactattttttatttgtcTTCAAAGTTAA
TGTTTATTTGAAGAAGcaagttttttatgaatttattttattgtaCATAT
TTAAAAGTAGGTAGTAcgttacaaaaaaaaacatttacatcTTTGAAATC
AAGACTGACGAGCATATACTTGTTTTGCTTTAAAATAACAATCGAC
Run BLAST on NCBI

transcript from alignment at sc0000269:46112..49054+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017487 ID=TCONS_00017487|Name=TCONS_00017487|organism=Clytia hemisphaerica|type=transcript|length=2943bp|location=Sequence derived from alignment at sc0000269:46112..49054+ (Clytia hemisphaerica)
aatttttttatttcaaaacgaggcaagtgttgttcgtgacgtaatttatg
aaaaggtctatacccAAACAAAATTGGTTGATTGTAGCGAAATTTATTGG
TTGAATGTTTTTGCATATGAGATAATGTCGTATTTGTGGAAATCGAAGTA
TTTTGTAATGGCAGTGAATAAATTGTTCCTGTGTTAATCCCAATTTACTG
ACAGTAATCACAATATTACCAAACCTTTATATTGTTCAATAGTATCCTCT
TTCAACGAGGTTTATATCCTATGGAATCGTTCGATCGCAAGATTGCTTAC
GATGTGCCCGTTTTCGTTTCTACCAACACTGATTTGAATGATTATCTACA
CAAGTTCATCGAACAAATGAAAGGTTTGTTGGtactttcttattttgatt
tcaattctttgacAGTTTTATTCTTAGAAAAATGAACTTCATGGTCTTAC
CTGGAGATCTACTTTGTCTGGTAGCGGGATGGGAGGGACGGGAATAGAGA
TAATATGGTTTTGCTGCTTCATTaccaggaaaaaaattttaaaaaatagg
CGAGCTAAAAACGAGTGcgttttttttagctgaaaaaaaattgtgaggTA
AAAAAGGGAAGAGCGCTAAAATTTACGATCTGAAGAGCTTTagaatttta
agaaatatatatcccattttttttttcattaccaGATTGGTTAGTAAAGA
AGACGATTCAAAGGATTGTATTGGTGATCACTTCAGTTGCCAAGAAAGTG
GACGTTGAACGGTGGACATTCAACATCGAATGTGATAAAACTGCTAATGA
AACCACGTAAGAATGATTTCGGACGTACAGGGGAACAATTATGATAAAGG
GgctttttaaaaacctaaatgTTATCGTAAATTAATTCACCAAGAGTGCT
CAATGATCGTGTATCAATAAAACGAGGGCGTAATCGAAAAGATTCGAGAA
AGAACAAATGACCCAATTAagaaaagttagtttttttagtttttatgacg
tttTTATAGTACccttcattttcagtcatttgtttggtcgttttctgtcg
gctaatgcgatctaaaattatggtaattttaagacatgccataacttacc
cgagtcaTCTTAGGCGTAAACGTTCAAAAACTTCATAATTATCActtata
aaattaattttcctgCCTTACCTCGCTGTCTTCTTAATGCTTGGAGTTTA
TAATTTCCCTGAAGCTTTTACCCTGAGTTTCCATCTCTTTGAGTTCCATG
CTATACTGTCAGAACCAACgttcttttatctttttttaataaggccctac
tttcttttcttctctAGGGAACAGACGACAAAACCAGTAAAAGAGGTTCG
TAAAGAAATGCAAGCAGTCATCAAACAAATTGTGTCAACAGTCACCTTTC
TACCTTATCTCGATGAAAGATGTATGTATTAACGTTTCGGACCTACCTGG
atgtcctttaaattaacccctctcgtttgttcgttcgttcgtatTAACTT
CTGTTGTCACAAACTTATGCCAAATTTGTTGTTTGGATTTGTACAACTCT
TCGATAACGTTGCAAATGACTCAACTAAAAACAGACTAATAATAAACATG
TTTAGCCCAGCTTTCACCCAGACGGGATAAGGGCTTATATTCAACTTTCG
CCGGTAAAAGCTCAAAACTACCTCTGCACTTTTAGGACTTACAAATCCAA
ACTCAAATATTTACAATACCTGAATCTCCACCTTCTTCTTATCAGGCACG
TTCGACTTGTTAGTGTACACAGATGCGGACAGCGAAGTACCAGCTCTTTG
GGAAGACGGAGAGGAACATTACATTTCGAACGCCGAAGAAGTCAAACTAA
AATCCTTCTCAACTTTGCTTCATAAAGTTGACATGGCTGTATGCTACAAA
GTCTCATAATAATGAACAATTTTTTgttattctcatttttgattagaAGC
ATCAACTTATCAAAATTATGTTTGAGAGTTCTAAACGACTGTTCAAAAGT
GCCTGTGTAGTTCTTTGATACAATggcaaatcattttcaaaaacttttaa
caacGACTTTGAATTCTCTCATATGATACACTCTAAGAATATTATGTGGC
TTTCATTACATATAGCAAAGAATAGACTGAGACGAGCAATTTAAAAAATG
AGCATAatggaggagtgtactttccattcatgtttcaatgaataggatct
cctccacagatcacattttacaaactactcgtctcaggcgatttttccgt
ctcagtataaatggaacttttccaaaaaaattgatgaaacttTTAACTAA
CAGGTTGTTGTTGCAAGTAATCGCTCAAACGGTAAGACTATAATTAGATT
Gtcaacattgagtttcaagccagaagggctagaggcgagactcctatatg
ggaaatgaaaccacttatttcccatccagaacgcccgcgcgtagttttta
cacaaacgccggcaactaaaatctatcgctagaatttaaaaaaatgtagt
cctccaaaacaaaggaatcgctagatACAATCCCCCGTCgagattacggc
gcgttctatgcgtgttttggatgggaaataagtggcttcaatttctcttg
ccttaGAAGGGTTCAAGTTtcgcccttcgggcttgaaactcaacgATTGT
CAAGCTTTTAGCCTAGGGAGATTTTCTAGCATCGGTTATTTTTAAACTCT
GAGGTTATGGACTTACATGGCATTATTGTATGATGTCATTTTAAAAGATA
TCCTTTTCTGACTTGtcaaactattttttatttgtcTTCAAAGTTAATGT
TTATTTGAAGAAGcaagttttttatgaatttattttattgtaCATATTTA
AAAGTAGGTAGTAcgttacaaaaaaaaacatttacatcTTTGAAATCAAG
ACTGACGAGCATATACTTGTTTTGCTTTAAAATAACAATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009787XLOC_009787Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017487-exon-sc0000269-1491911889:46112..46484TCONS_00017487-exon-sc0000269-1491911889:46112..46484Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1510915933:46112..46484TCONS_00017487-exon-sc0000269-1510915933:46112..46484Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1575043694:46112..46484TCONS_00017487-exon-sc0000269-1575043694:46112..46484Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1491911889:46797..46917TCONS_00017487-exon-sc0000269-1491911889:46797..46917Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1510915933:46797..46917TCONS_00017487-exon-sc0000269-1510915933:46797..46917Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1575043694:46797..46917TCONS_00017487-exon-sc0000269-1575043694:46797..46917Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1491911889:47429..47532TCONS_00017487-exon-sc0000269-1491911889:47429..47532Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1510915933:47429..47532TCONS_00017487-exon-sc0000269-1510915933:47429..47532Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1575043694:47429..47532TCONS_00017487-exon-sc0000269-1575043694:47429..47532Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1491911889:47857..49054TCONS_00017487-exon-sc0000269-1491911889:47857..49054Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1510915933:47857..49054TCONS_00017487-exon-sc0000269-1510915933:47857..49054Clytia hemisphaericaexon
TCONS_00017487-exon-sc0000269-1575043694:47857..49054TCONS_00017487-exon-sc0000269-1575043694:47857..49054Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:46112..49054 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.97566	10.4819	33.1272	32.9338	6.84282	4.65772	7.62842	7.97834	4.26409	3.80815	3.78571	3.87062	2.47798	2.79643	5.45951	4.03972	6.36914	6.27629	0.901501	1.16134	3.66225	4.66972	10.1396	8.23903	9.55913	10.9523	3.22629	2.56148	4.44608	5.03793
Blast
[Close]
BLAST of TCONS_00017487 vs. Swiss-Prot (Human)
Match: MD2L1 (Mitotic spindle assembly checkpoint protein MAD2A OS=Homo sapiens GN=MAD2L1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.859e-52
Identity = 82/173 (47.40%), Postives = 125/173 (72.25%), Query Frame = 1 
Query:  238 NSILFQRGLYPMESFDRKIAYDVPVFVSTNTDLNDYLHKFIEQMKDWLVKKTIQRIVLVITSVAKKVDVERWTFNIECDKTANETTEQTTKPVKEVRKEMQAVIKQIVSTVTFLPYLDERCTFDLLVYTDADSEVPALWEDGEEHYISNAEEVKLKSFSTLLHKVDMAVCYKV 756
            NSIL+QRG+YP E+F R   Y + + V+T+ +L  YL+  +EQ+KDWL K ++Q++V+VI+++     +ERW F+IECDKTA + +    K  K ++ E+++VI+QI +TVTFLP L+  C+FDLL+YTD D  VP  WE+    +I+N+EEV+L+SF+T +HKV+  V YK+
Sbjct:   29 NSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKI 201
The following BLAST results are available for this feature:
BLAST of TCONS_00017487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MD2L13.859e-5247.40Mitotic spindle assembly checkpoint protein MAD2A ... [more]
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