TCONS_00017485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017485
Unique NameTCONS_00017485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017485 ID=TCONS_00017485|Name=TCONS_00017485|organism=Clytia hemisphaerica|type=transcript|length=237bp
GTTAGAGTTTGGCCTTCGGGCTAGCTTTAGAATGGAGAAGTAAGGCGACT
CCTTCCCTCCACTAGTCTGGGTGTTCACAGTTGGGCCTGTGTCCTTTGGT
AGCATGCTTTGCTTGCTATCCTACCAATAGCCCCCCTTGTCAGGGTACGA
CAACGGCAATCTTGGCATCATTTTTGGCACCGGCAGTTGTGTTTGTCAAC
TCGACATCGCTTCTGGCACCTGGCAGTAGTTCTTTGT
Run BLAST on NCBI

transcript from alignment at sc0000267:470904..471140

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017485 ID=TCONS_00017485|Name=TCONS_00017485|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at sc0000267:470904..471140 (Clytia hemisphaerica)
ACAAAGAACTACTGCCAGGTGCCAGAAGCGATGTCGAGTTGACAAACACA
ACTGCCGGTGCCAAAAATGATGCCAAGATTGCCGTTGTCGTACCCTGACA
AGGGGGGCTATTGGTAGGATAGCAAGCAAAGCATGCTACCAAAGGACACA
GGCCCAACTGTGAACACCCAGACTAGTGGAGGGAAGGAGTCGCCTTACTT
CTCCATTCTAAAGCTAGCCCGAAGGCCAAACTCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009785XLOC_009785Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017485-exon-sc0000267-1491911889:470904..471140TCONS_00017485-exon-sc0000267-1491911889:470904..471140Clytia hemisphaericaexon
TCONS_00017485-exon-sc0000267-1510915933:470904..471140TCONS_00017485-exon-sc0000267-1510915933:470904..471140Clytia hemisphaericaexon
TCONS_00017485-exon-sc0000267-1575043694:470904..471140TCONS_00017485-exon-sc0000267-1575043694:470904..471140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:470904..471140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.943946	0.920496	0	2.09128	0	1.00591	1.99171	0	4.77267	7.8823	4.58004	6.03816	4.95328	1.95589	1.07201	0.575214	0.708617	0	4.01374	4.20009	0	5.16043	4.07753	2.7701	0	0	3.45385	3.97497	1.8387	1.42508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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