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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017477 ID=TCONS_00017477|Name=TCONS_00017477|organism=Clytia hemisphaerica|type=transcript|length=1031bp
GCTGAAGAGAGTGATCAGTTGGTTTGAAGTGTTTAACCAACTGGGAATTA
ACATCGGTGCTGGATTACCAATTCTATTTACCGGGTTCCGAATCCGAATC
GGATATTTGAAACTAGACAAATACAATATGGTCAATCTTCTTATTGCtgt
aatttcttttgttctcgCCGTCGTTTCATATTACAAAGTCACCAATCTAT
CGAAAAGTCTGGCAATCATAGATTCGGAAAACCAAAAGATCCATTCTGAT
TCATCTGGTCAAAAGACAACTGCCGAGAAAGTGGATCAATCTTTGAATAT
TAAAGAGATCAGTTCAGCACACCAGAATAAGCATTGCCAAAGGAAGTCAC
CTACAAACACTAAACATCTAAATAATAAAACGAAGGCAGCTCCAGGAAGA
CCAGATCCATCATCAACAAGCCTGATGAAATATTCAGATCTTCTTCAATT
CGATATTATCACACTATGCTTGGCGTACGGTATGGCTCGGTATAGCGTCG
GCACCTTCATCTCAAACATGACCATCATCGCACCGTCCGAATATCATTGG
TCACTGAGCACACTTCTTATAGTCGTCATGACATCAAACTGGTTCACACT
AGCCGTCACCTTACTTCTTGTCAAACATGGTTTCTTCACCGATAACATGC
GTAATTTTTACTTATACGTAACCTCGTTAGCAGCAAGTTCAgccatgatg
acgtcattcatgCTAACAAACATTGGAGTGTTGGATACTCTCCCAAAACA
GATTCTACTGTTCGCCATGTTAAACATCACCAAAAATTTCATATACTTTC
AAGGACAGTTGACCAACACTTTTCTGATATTACAGACGGTCAATCCACAA
GATTCAAGCTTTATCACAGGCGTTCGTGGGGCGGTAGGGACTACCTTCAA
AGGGTTTGGTTACACACTAGCCTCCTTTTCATCTCATTACCCACAATACC
ACTCACCTGTGGTTGCTATGGTTACTTTGACATTTGCTGTTCTTATCTTA
TGGAGACGAAACCTTCACCTTCAGCGGAGCT Run BLAST on NCBI protein sequence of TCONS_00017477-protein >TCONS_00017477-protein ID=TCONS_00017477-protein|Name=TCONS_00017477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
LKRVISWFEVFNQLGINIGAGLPILFTGFRIRIGYLKLDKYNMVNLLIAV
ISFVLAVVSYYKVTNLSKSLAIIDSENQKIHSDSSGQKTTAEKVDQSLNI
KEISSAHQNKHCQRKSPTNTKHLNNKTKAAPGRPDPSSTSLMKYSDLLQF
DIITLCLAYGMARYSVGTFISNMTIIAPSEYHWSLSTLLIVVMTSNWFTL
AVTLLLVKHGFFTDNMRNFYLYVTSLAASSAMMTSFMLTNIGVLDTLPKQ
ILLFAMLNITKNFIYFQGQLTNTFLILQTVNPQDSSFITGVRGAVGTTFK
GFGYTLASFSSHYPQYHSPVVAMVTLTFAVLILWRRNLHLQRS Run BLAST on NCBI transcript from alignment at sc0000267:252728..253758 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017477 ID=TCONS_00017477|Name=TCONS_00017477|organism=Clytia hemisphaerica|type=transcript|length=1031bp|location=Sequence derived from alignment at sc0000267:252728..253758 (Clytia hemisphaerica)
AGCTCCGCTGAAGGTGAAGGTTTCGTCTCCATAAGATAAGAACAGCAAAT
GTCAAAGTAACCATAGCAACCACAGGTGAGTGGTATTGTGGGTAATGAGA
TGAAAAGGAGGCTAGTGTGTAACCAAACCCTTTGAAGGTAGTCCCTACCG
CCCCACGAACGCCTGTGATAAAGCTTGAATCTTGTGGATTGACCGTCTGT
AATATCAGAAAAGTGTTGGTCAACTGTCCTTGAAAGTATATGAAATTTTT
GGTGATGTTTAACATGGCGAACAGTAGAATCTGTTTTGGGAGAGTATCCA
ACACTCCAATGTTTGTTAGcatgaatgacgtcatcatggcTGAACTTGCT
GCTAACGAGGTTACGTATAAGTAAAAATTACGCATGTTATCGGTGAAGAA
ACCATGTTTGACAAGAAGTAAGGTGACGGCTAGTGTGAACCAGTTTGATG
TCATGACGACTATAAGAAGTGTGCTCAGTGACCAATGATATTCGGACGGT
GCGATGATGGTCATGTTTGAGATGAAGGTGCCGACGCTATACCGAGCCAT
ACCGTACGCCAAGCATAGTGTGATAATATCGAATTGAAGAAGATCTGAAT
ATTTCATCAGGCTTGTTGATGATGGATCTGGTCTTCCTGGAGCTGCCTTC
GTTTTATTATTTAGATGTTTAGTGTTTGTAGGTGACTTCCTTTGGCAATG
CTTATTCTGGTGTGCTGAACTGATCTCTTTAATATTCAAAGATTGATCCA
CTTTCTCGGCAGTTGTCTTTTGACCAGATGAATCAGAATGGATCTTTTGG
TTTTCCGAATCTATGATTGCCAGACTTTTCGATAGATTGGTGACTTTGTA
ATATGAAACGACGGcgagaacaaaagaaattacaGCAATAAGAAGATTGA
CCATATTGTATTTGTCTAGTTTCAAATATCCGATTCGGATTCGGAACCCG
GTAAATAGAATTGGTAATCCAGCACCGATGTTAATTCCCAGTTGGTTAAA
CACTTCAAACCAACTGATCACTCTCTTCAGC Coding sequence (CDS) from alignment at sc0000267:252728..253758 >TCONS_00017477 ID=TCONS_00017477|Name=TCONS_00017477|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at sc0000267:252728..253758 (Clytia hemisphaerica)
GCTCCGCTGAAGGTGAAGGTTTCGTCTCCATAAGATAAGAACAGCAAATG
TCAAAGTAACCATAGCAACCACAGGTGAGTGGTATTGTGGGTAATGAGAT
GAAAAGGAGGCTAGTGTGTAACCAAACCCTTTGAAGGTAGTCCCTACCGC
CCCACGAACGCCTGTGATAAAGCTTGAATCTTGTGGATTGACCGTCTGTA
ATATCAGAAAAGTGTTGGTCAACTGTCCTTGAAAGTATATGAAATTTTTG
GTGATGTTTAACATGGCGAACAGTAGAATCTGTTTTGGGAGAGTATCCAA
CACTCCAATGTTTGTTAGcatgaatgacgtcatcatggcTGAACTTGCTG
CTAACGAGGTTACGTATAAGTAAAAATTACGCATGTTATCGGTGAAGAAA
CCATGTTTGACAAGAAGTAAGGTGACGGCTAGTGTGAACCAGTTTGATGT
CATGACGACTATAAGAAGTGTGCTCAGTGACCAATGATATTCGGACGGTG
CGATGATGGTCATGTTTGAGATGAAGGTGCCGACGCTATACCGAGCCATA
CCGTACGCCAAGCATAGTGTGATAATATCGAATTGAAGAAGATCTGAATA
TTTCATCAGGCTTGTTGATGATGGATCTGGTCTTCCTGGAGCTGCCTTCG
TTTTATTATTTAGATGTTTAGTGTTTGTAGGTGACTTCCTTTGGCAATGC
TTATTCTGGTGTGCTGAACTGATCTCTTTAATATTCAAAGATTGATCCAC
TTTCTCGGCAGTTGTCTTTTGACCAGATGAATCAGAATGGATCTTTTGGT
TTTCCGAATCTATGATTGCCAGACTTTTCGATAGATTGGTGACTTTGTAA
TATGAAACGACGGcgagaacaaaagaaattacaGCAATAAGAAGATTGAC
CATATTGTATTTGTCTAGTTTCAAATATCCGATTCGGATTCGGAACCCGG
TAAATAGAATTGGTAATCCAGCACCGATGTTAATTCCCAGTTGGTTAAAC
ACTTCAAACCAACTGATCACTCTCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017477-exon-sc0000267-1491911889:252728..253758 | TCONS_00017477-exon-sc0000267-1491911889:252728..253758 | Clytia hemisphaerica | exon |
| TCONS_00017477-exon-sc0000267-1510915933:252728..253758 | TCONS_00017477-exon-sc0000267-1510915933:252728..253758 | Clytia hemisphaerica | exon |
| TCONS_00017477-exon-sc0000267-1575043694:252728..253758 | TCONS_00017477-exon-sc0000267-1575043694:252728..253758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000267 | supercontig | sc0000267:252728..253758 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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