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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017444 ID=TCONS_00017444|Name=TCONS_00017444|organism=Clytia hemisphaerica|type=transcript|length=5146bpRun BLAST on NCBI protein sequence of TCONS_00017444-protein >TCONS_00017444-protein ID=TCONS_00017444-protein|Name=TCONS_00017444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=721bp MFKFFHNSNSSSSSSVQNSTAGGGGDSNNSNMGSLRQLEQALLQKDNEIKRun BLAST on NCBI transcript from alignment at sc0000267:216356..231045- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017444 ID=TCONS_00017444|Name=TCONS_00017444|organism=Clytia hemisphaerica|type=transcript|length=14690bp|location=Sequence derived from alignment at sc0000267:216356..231045- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000267:216356..231045- >TCONS_00017444 ID=TCONS_00017444|Name=TCONS_00017444|organism=Clytia hemisphaerica|type=CDS|length=32490bp|location=Sequence derived from alignment at sc0000267:216356..231045- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017444 vs. Swiss-Prot (Human)
Match: KGP1 (cGMP-dependent protein kinase 1 OS=Homo sapiens GN=PRKG1 PE=1 SV=3) HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0 Identity = 429/672 (63.84%), Postives = 516/672 (76.79%), Query Frame = 1
Query: 451 RDSRIAILEQELKKKDETIRNLNRELDKYRSVLN-PGQKDGAVAASKTRQRMQGISAEPQSLSKTQALAAAPLKRHSKSSKAKEVIRAAIKDNDFLKNLESQQVSELVEVMYQKEFKKGEYIIREGEPGSHLYVIEDGQCEVTKDGKQLGTMGAKKAFGELAILYNCTRTATVRATSTGKLWSIDRQNFQTIMMNTGIKRQQEHMDFLLSVPVLKDIPEDSLSKIADVLEETFYEEGEYIIRQGARGDTFFILKKGTVDVTQRASVHSDPQFVRSLGKGAYFGEKALLGEDLRTANVIAGKGGCTCLVVDREGFSMFIESDIXXXXXXYSDQPKKLSTGPKSPTAIAKEADEFADVKLTDLNVIATLGVGGFGRVELVQFSKDNKRTFALKQLKKKHIVETRQQDHIMSEKKIMYESHCQFIVRLYKTFKDRKYLYMLLEVCLGGELWTILRDRGSFDDNTTRFNVACVIEAFSYLHSKGIVYRDLKPENLLLDEKGYCKLVDFGFAKKIGFGRKTWTFCGTPEYVAPEIILNKGHDFAADYWSLGILMYELLTGSPPFSGSDPMKTYNIILKGIDMIEFPRKITRNAHNLIKKLCKDNPSERLGYQKNGLKDIQKHKWFDGFNWDGLRNRKLQPPIIPKIKSNTDASNFDDYPKD-DEIPPDDHTGWDKDF 2460
++ RI LE+ L +K+E I+ L R+L K +SVL P G R QGISAEPQ+ L A ++ +KS ++K++I+ AI DNDF+KNLE Q+ E+V+ MY E+ K II+EG+ GS +YV+EDG+ EVTK+G +L TMG K FGELAILYNCTRTATV+ KLW+IDRQ FQTIMM TG+ + E+M+FL SVP + +PE+ LSK+ADVLEET YE GEYIIRQGARGDTFFI+ KGTV+VT+ S DP F+R+LGKG +FGEKAL GED+RTANVIA + TCLV+DR+ F I + Y D ++ EA FA++KL+D N+I TLGVGGFGRVELVQ + +TFA+K LKK+HIV+TRQQ+HI SEK+IM +H FIVRLY+TFKD KYLYML+E CLGGELWTILRDRGSF+D+TTRF ACV+EAF+YLHSKGI+YRDLKPENL+LD +GY KLVDFGFAKKIGFG+KTWTFCGTPEYVAPEIILNKGHD +ADYWSLGILMYELLTGSPPFSG DPMKTYNIIL+GIDMIEFP+KI +NA NLIKKLC+DNPSERLG KNG+KDIQKHKWF+GFNW+GLR L PPIIP + S TD SNFD +P+D DE PPDD++GWD DF
Sbjct: 15 KEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVPSTHIGPRTT-----RAQGISAEPQTYRSFHDLRQA-FRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDSPSEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEA-VTCLVIDRDSFKHLIGGLDDVSNKAYEDA--------EAKAKYEAEAAFFANLKLSDFNIIDTLGVGGFGRVELVQLKSEESKTFAMKILKKRHIVDTRQQEHIRSEKQIMQGAHSDFIVRLYRTFKDSKYLYMLMEACLGGELWTILRDRGSFEDSTTRFYTACVVEAFAYLHSKGIIYRDLKPENLILDHRGYAKLVDFGFAKKIGFGKKTWTFCGTPEYVAPEIILNKGHDISADYWSLGILMYELLTGSPPFSGPDPMKTYNIILRGIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDIQKHKWFEGFNWEGLRKGTLTPPIIPSVASPTDTSNFDSFPEDNDEPPPDDNSGWDIDF 671 The following BLAST results are available for this feature:
BLAST of TCONS_00017444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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