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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017437 ID=TCONS_00017437|Name=TCONS_00017437|organism=Clytia hemisphaerica|type=transcript|length=1744bp
GACTCTTGTTAGGTTCAATAAAAATGGAGGCTTCACCTTCTAAACGAATT
CATAAAGAGGTGAGTCTTCAAACAAAATATATGGCGCTGTTGGAGCTTGA
AAGtggaaaaacaaacaaagaagttTGCTTAATGTTTGAAGTTCCCTCAA
ACACGATATCTACCTGGAAGAAGAAcaaatccaaaatctttgaagctcTC
AGAAATGGAAGTCCTGCAAGTAAGAGGCTCAGAGTTGACAAATTTGATCA
AATCAACAAAGCTGTTCTACAATGGTTTCACCAAATGCAACTAGATAATG
TTATAATTAACAGACCCATGGTCAGGGAAAAGGCTCTATCATTTGCAAAA
GAGATGggagttgaaaattttcatgctTCTAATGGTTGGCTTGAGAAATG
GAAGAAAAGATACAACGTCTCATTCAAAACTGCATCAGAGGCAGCAAAAG
CTGAAAGAGATGGAATGATGCCTCCAAGTATTGAAGCAACTCTACCAATG
CTCCTATCACGATATACTTTGAAAGACATTTTTAATGCTAAAGAATTTGG
CTTGTTTTACCAGTGTCTTCCTGGGACGATTAGCCATCTGGCAGAAGAGA
ACTGTGCAGACGGAAAACATAGTAGCTCTCGTTTGACAGTCGTTGCGGTT
GCTAATGCATTTGGTGAAAGAATGGAAATCTTTGTTATAGGTAAGCCTGC
CAATCCTAGTTCCTCAGAAGATGTTAAAAATATTCCATGTCGCTATCGAT
CTCAAAggaaaagttggatggattcaaGTTTATTTGAAGAGTGGGTTAGG
GAACTGGATACCAAGTTTGGCGAGTCAGGTAGAAAAGTTGCTTTGATTGT
TAGCGATTCTTCTGCTCACCCTGATATAGATGGTTTACAATGGGTTGAGC
TCATCTTTATTCCTCCAAAAACTGACTCAATGACACAGCCCATGGATCAA
GGTATTGTCAAAtatctcaaaacaaaattccgCTCACTTCAAGTCAAGAA
ACAGATCCTGGATTGTGAGAAATTCAATGAGCTTTCCAAACTTTCTATCC
CTGCTATTATGGCAATGCTTTTACAGGCTTGGCATTCTATtccttttcaa
acttttaccaGTTCATTCAAGAAGGCAGGTTTGCTAATTGAAGCTACAGA
GAGAATATCAAATGATCATGATGATGAGTTTGTTATAACCATCTTGAATG
AATTAGAAGCAAATCTCCTGTTATTAAAGGAGAAATTTGGATTGGATTAC
AAATTAACTGCTGAACAACTTATCAACATTGACTCCCAGGTATCTGTCAC
TGGAACCTTATCAGATGCTGACATCATTGCTGGAGTTTATGGCAACTCTG
TAGATTTGAGTGATGATGAACCTGACCAACCGCAACTggaggaaaaaatt
gttttaagaCCATCTAAAAATTCAGTGTCAAATGCAATTAAAACTTTAGA
GGATTATAGTGTGTTTTCCAAGTTTGGCACTGATATAATAACTGCCTTAA
AACAAATACAAAGAGCTGTTGATTTGGACAACCAACTTATTAATAGTGGC
TCCAAAAAAATCGAAGAGTAAAACCTGTGAGACAGTGACATGGTTGTCTC
ttatttgtaatatattttgtaGTCTATTTTAAAGGTAGATAAAAAAACAG
TCTTCTTTCTATCTGCTGAATGTTTCAACCATTATCTCAAGAAGATTGCA
ACAGGGCATTTTACTGCATTTAtgtgaaaattataaaatttaac Run BLAST on NCBI transcript from alignment at sc0000267:478135..480327+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017437 ID=TCONS_00017437|Name=TCONS_00017437|organism=Clytia hemisphaerica|type=transcript|length=2193bp|location=Sequence derived from alignment at sc0000267:478135..480327+ (Clytia hemisphaerica)
GACTCTTGTTAGGTTCAATAAAAATGGAGGCTTCACCTTCTAAACGAATT
CATAAAGAGGTGAGTCTTCAAACAAAATATATGGCGCTGTTGGAGCTTGA
AAGtggaaaaacaaacaaagaagttTGCTTAATGTTTGAAGTTCCCTCAA
ACACGATATCTACCTGGAAGAAGAAcaaatccaaaatctttgaagctcTC
AGAAATGGAAGTCCTGCAAGTAAGAGGCTCAGAGTTGACAAATTTGATCA
AATCAACAAAGCTGTTCTACAATGGTTTCACCAAATGCAACTAGATAATG
TTATAATTAACAGACCCATGGTCAGGGAAAAGGCTCTATCATTTGCAAAA
GAGATGggagttgaaaattttcatgctTCTAATGGTTGGCTTGAGAAATG
GAAGAAAAGGTAGATATCAAATTCCATTAGTCAATTTTTAAACGTTAGTC
ACATGAGAAGAGTATAATTGTTGCCAAAGAGCTGATTGGTGTCTTNATAT
AAAATTCCATTAGTCAATTTTTAAACGTTAGTCACATGCCAAGAGTATTA
TAATTGTTGCCAAAGAGCTGATTGATGTCTGTtgatctttgaaaatttat
tgtcaaaatcttctttgttgttgtttttactAAACTTTGTTTCAGATACA
ACGTCTCATTCAAAACTGCATCAGAGGCAGCAAAAGCTGAAAGAGATGGA
ATGATGCCTCCAAGTATTGAAGCAACTCTACCAATGCTCCTATCACGATA
TACTTTGAAAGACATTTTTAATGCTAAAGAATTTGGCTTGTTTTACCAGT
GTCTTCCTGGGACGATTAGCCATCTGGCAGAAGAGAACTGTGCAGACGGA
AAACATAGTAGCTCTCGTTTGACAGTCGTTGCGGTTGCTAATGCATTTGG
TGAAAGAATGGAAATCTTTGTTATAGGTAAGCCTGCCAATCCTAGTTCCT
CAGAAGATGTTAAAAATATTCCATGTCGCTATCGATCTCAAAggaaaagt
tggatggattcaaGTTTATTTGAAGAGTGGGTTAGGGAACTGGATACCAA
GTTTGGCGAGTCAGGTAGAAAAGTTGCTTTGATTGTTAGCGATTCTTCTG
CTCACCCTGATATAGATGGTTTACAATGGGTTGAGCTCATCTTTATTCCT
CCAAAAACTGACTCAATGACACAGCCCATGGATCAAGGTATTGTCAAAta
tctcaaaacaaaattccgCTCACTTCAAGTCAAGAAACAGATCCTGGATT
GTGAGAAATTCAATGAGCTTTCCAAACTTTCTATCCCTGCTATTATGGCA
ATGCTTTTACAGGCTTGGCATTCTATtccttttcaaacttttaccaGTTC
ATTCAAGAAGGCAGGTTTGGNTGACTCAATGACACAGCCCATGGATCAAG
GTATTGTCAAAtatctcaaaacaaaattccgCTCACTTCAAGTCAAGAAA
CAGATCCTGGATTGTGAGAAATTCAATGAGCTTTCCAAACTTTCTATCCC
TGCTATTATGGCAATGCTTTTACAGGCTTGGCATTCTATtccttttcaaa
cttttaccaGTTCTTTCAAGAAGGCAGGTTTGCTAATTGAAGCTACAGAG
AGAATATCAAATGATCATGATGATGAGTTTGTTATAACCATCTTGAATGA
ATTAGAAGCAAATCTCCTGTTATTAAAGGAGAAATTTGGATTGGATTACA
AATTAACTGCTGAACAACTTATCAACATTGACTCCCAGGTATCTGTCACT
GGAACCTTATCAGATGCTGACATCATTGCTGGAGTTTATGGCAACTCTGT
AGATTTGAGTGATGATGAACCTGACCAACCGCAACTggaggaaaaaattg
ttttaagaCCATCTAAAAATTCAGTGTCAAATGCAATTAAAACTTTAGAG
GATTATAGTGTGTTTTCCAAGTTTGGCACTGATATAATAACTGCCTTAAA
ACAAATACAAAGAGCTGTTGATTTGGACAACCAACTTATTAATAGTGGCT
CCAAAAAAATCGAAGAGTAAAACCTGTGAGACAGTGACATGGTTGTCTCt
tatttgtaatatattttgtaGTCTATTTTAAAGGTAGATAAAAAAACAGT
CTTCTTTCTATCTGCTGAATGTTTCAACCATTATCTCAAGAAGATTGCAA
CAGGGCATTTTACTGCATTTAtgtgaaaattataaaatttaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017437-exon-sc0000267-1491911889:478135..478543 | TCONS_00017437-exon-sc0000267-1491911889:478135..478543 | Clytia hemisphaerica | exon |
| TCONS_00017437-exon-sc0000267-1510915933:478135..478543 | TCONS_00017437-exon-sc0000267-1510915933:478135..478543 | Clytia hemisphaerica | exon |
| TCONS_00017437-exon-sc0000267-1575043694:478135..478543 | TCONS_00017437-exon-sc0000267-1575043694:478135..478543 | Clytia hemisphaerica | exon |
| TCONS_00017437-exon-sc0000267-1491911889:478780..479494 | TCONS_00017437-exon-sc0000267-1491911889:478780..479494 | Clytia hemisphaerica | exon |
| TCONS_00017437-exon-sc0000267-1510915933:478780..479494 | TCONS_00017437-exon-sc0000267-1510915933:478780..479494 | Clytia hemisphaerica | exon |
| TCONS_00017437-exon-sc0000267-1575043694:478780..479494 | TCONS_00017437-exon-sc0000267-1575043694:478780..479494 | Clytia hemisphaerica | exon |
| TCONS_00017437-exon-sc0000267-1491911889:479708..480327 | TCONS_00017437-exon-sc0000267-1491911889:479708..480327 | Clytia hemisphaerica | exon |
| TCONS_00017437-exon-sc0000267-1510915933:479708..480327 | TCONS_00017437-exon-sc0000267-1510915933:479708..480327 | Clytia hemisphaerica | exon |
| TCONS_00017437-exon-sc0000267-1575043694:479708..480327 | TCONS_00017437-exon-sc0000267-1575043694:479708..480327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000267 | supercontig | sc0000267:478135..480327 + |
Blast
BLAST of TCONS_00017437 vs. Swiss-Prot (Human)
Match: TIGD4 (Tigger transposable element-derived protein 4 OS=Homo sapiens GN=TIGD4 PE=2 SV=2) HSP 1 Score: 218.394 bits (555), Expect = 6.283e-63 Identity = 128/382 (33.51%), Postives = 206/382 (53.93%), Query Frame = 3
Query: 54 KEVSLQTKYMALLELESGKTNKEVCLMFEVPSNTISTWKKNKSKIFEALRN--GSPASKRLRVDKFDQINKAVLQWFHQMQLDNVIINRPMVREKALSFAKEMGVENFHASNGWLEKWKKRYNVSFKTASEAAKAERDGM-MPPSI---EATLPMLLSRYTLKDIFNAKEFGLFYQCLPGTISHLAEENCADGKHSSSRLTVVAVANAFG-ERMEIFVIGKPANPSSSEDVKNIPCRYRSQRKSWMDSSLFEEWVRELDTKFGESGRKVALIVSDSSAHPDIDGLQWVELIFIPPKTDSMTQPMDQGIVKYLKTKFRSLQVKKQILDCEKFNELSKLSIPAIMAMLLQAWHSIPFQTFTSSFKKAGLLIEATER-ISNDHDD 1175
K +S++ K + +ESGK E+ + + N++S+ KNK K+ EA + P KRLR + + +A+++W+ Q NV +N PM+R KA FA+++G +F SNGWL+++K RY + F+ A E G+ + PS + LP L+ Y K++FN KE GL Y+ LP E C+ GK R+T+V N G E++ + VIGK P + +K++P Y + R +WM S +FE+W+R+LD +F R+V + V AHP++ L+ +EL F P S M QG++K LK K+R +KK + E E + + A+ + L W ++ +T S+++AG + E I+N D
Sbjct: 19 KSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEAFESLRFDPKRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLGHNDFKCSNGWLDRFKSRYGLVFR----AQPVEATGVPVDPSTVWYQNVLPYYLNDYHPKNVFNIKETGLLYRMLPTNTFAFKGETCSVGKLCKDRITLVVGTNMDGSEKLPLLVIGKKRTPHCFKGLKSLPVCYEANRMAWMTSDVFEQWMRKLDEEFQAQQRRVVIFVESFPAHPEVKNLKSIELAFFPSCLSSKCIAMKQGVIKSLKIKYRHCLIKKFLSSVEGSKEFTFSLLDAVDTLHL-CWRAVTPETIVKSYEEAGFKSQKGESDITNAEKD 395
The following BLAST results are available for this feature:
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