TCONS_00017419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017419
Unique NameTCONS_00017419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017419 ID=TCONS_00017419|Name=TCONS_00017419|organism=Clytia hemisphaerica|type=transcript|length=4971bp
TTTTATAACGCAATACGTATCTCTGTTTTTATGATTGAGGAGATTACAAC
ATATAccatgagattgggtaacttgcatcagtggaggcaaacatgcatat
cCTTCAAATGACTGACCTTCCTggttattaaaatacaaagttaaatcaaa
acaaaaatggtagagtagatctgcaagcggagctgcgtagttcatttgtt
ttgaaatttttctgctttgattggttacttcgataatcgaatttatcgat
tagtaaGTACCGTCTGGTTTAAAACATAGCTGTTACAATATTTATCTGGT
TTGTATTGGccgagggaaagtaatgtatgttggagtaatttgttattcat
tAGACCGTTGCATTCTCCCAGACAACTATTCCCTGCAAACCTGTTGGAAA
GACTTTAGGCGAacccgaaaaatatttttgtttccaatCCACCACTTTAA
AACTTGACAGTGCTGTTATTTTCTGCAACATGAACTGATAAGAGATAATT
AGGCTGaacttaaaaaaatgtttgtttccGACCAACCCTACCTAGAAAAC
TATTGTCGCAAAAAGTTTATTGCCActttaaaagaaactttttttcttta
ttgtgtCTGTCTGTCTTGTTCTATCTTAAGCTTAAGAATTGTCATTCTag
ctcttttgttttcatttaagtCCTTTCTAGGATTTTTTCgtaaaaaacac
tacatcttgaactTTTTGACTTCACCTCAAAGTTTTTCTTGAAGCCCTAT
CCTAGCCATGAGTTCACTGCCACTCAAATCAGTCCCATTCTCTTTAACTA
TTTTAGGGAAACAGGGAAAACAACATTAAAAATTGTCAATacatctattt
tttataagcataacaatATTAGCATATTAGCCATCCTAAAATATCTAATT
ATTTAATGCTCTTTATTTCAGtgtaaaaagaaaagttgaaaagttgaaaa
ttttcaagaggAAGCTGTTGGAATTTTCAAGCAAGATACTGATTGCAGTC
TCTAAACATACAGGGCTCGTTATGAAAGTGAGGGATGCAAAGGGCCTATA
CACGGGGCTTCAGAAACAGGCTTTCCTTCAGTCAAGATTGTTGGGTATGT
TGGACCTGTCAAGCTTCAGGTGTTTGTTGTTACAAGTGATCTTGAGCCGC
ATCTTCATGCTGCAACAGGACCTGGCTCAAGTAAGACCACTTGTGAAGAA
ATATGTCTCGATGATCAATACAAGACTCCTGCAATTGAAATGACCATTAC
ACCTACTGACAACAAAGATGAAATGGTTGCTGTATTCGACCAATTGAGTA
TCAGAAGGATAAGAAACTTCGAAGCTGACCGTGAATTGAGGAAAAGAGGC
ATTGAACCTGCTTCGTGGAAGTCCAAGAAAAAGGAAGCCAAGTTAGCTTT
TCGGGCAAAGATTCCTTGCACCAATCTACATCCAAATTATGTTATCACAA
GCTTTTCAAGATCTTTTTTGTGCACTGCACCATCTGGAAACCCAGAAATT
TGGTGGATCAGTAAAACAGAATCGTATGCAGAAGGAGGTGATGAACTAGG
ATTTATTGGCAAGAAATTTGCATCTGGTTTCAAAGTGCGTTTCTTCTCCA
GAGAGGATGATGGTAATAGCTGGGAAGTTTATGCTGACATCGATAAAACT
AAATCGAATCTTAATGCATGTGTCGTGAGAATACCACCTTACAAAGATAC
ACTTCTTAAAGAAAATGCTGTCATCCATGTCGAGATCCGTGTTGGCTCTG
ATAAAGAACCTCGATGTAGCGAACCATTCCTATTCACTTACATAACGAAG
GCTGCTGAAAGATGTCAAAATTGCACACAAATCAAAAGCTATCTGAAAAA
GATTTGCAATGGAGAAACAGCCGACCTTTCTTCTTCACCTGAGAATCTTG
ATATTAAAACAGAAGTTCAAAGTCCTGTTCGTAAAATTGTTTctactcca
aaaccatcaccACAAAGACAACCTGTTCAATCACCAGCTGTCGTCAAATC
TGCTCACCCACACAATCCCAATTCCTTGCTAAACATTGCACCAAATCTGA
AAACGCTTCTCAGAACCCAGACTATACCAAATTCACCAGTCGCAAATTTA
ATGACAATGCCATCATCTGGTAGTTCATTGAAGAGTGTTGCTGTCATAGC
TCCATCCTCAAGTGTACCCTTATGCCTACCTTCGACAAAGGTTGTCCAAG
GATTGCCAAAACCCGCTTTGCCTAATGCAAATGTTTCGATCTTAccaaca
ttgtttcaaaattcTCAGCCACAAATTTCTACACAGATTTATAATGCTAT
GCAGCCAACACTTCAAACAACAGTCCCTATTGCAGCACCTACACCAGCAA
ATAACCTGATGGTCAGTTATCAAACTGTAAATCAGCCAGTGCAAGTTCAT
CAGATCAAAAGTTCACTACCCAGCAATTCACCGATAAATCAAATATTCAC
TACCCAGCAATTCACCGATAAATCAAATAGCACAAGTTGTTTCCATGCAG
AATCATCCCTCAATAAAGCAAGAACAAGCCTTCATTCAGAATTGTCCGAC
ACCCCTGCCCCAACAACAAATCTCAATACAATCTCAAAGTATGTTTAACA
GTCAAACTGCTGTTACACCACTCCTCTCTATTGCTCCTACCATTGGCAAT
CCTGTACCTGCTACCAGTTGTATGCAACCTAGCAATATCACTACCCCTCA
AGTGCAATCAGTCAACACCTTACTAATCAACCACCAACAACAACACACTC
CAAACAATTCAGTTCCTTCATCGCCTCTCCAAAGTTCTCCAGTCgttcaa
aaaatggaaacgTCAACACCACCTGCCCCACTCACCGCTCCAGTCACCAT
CCCTACAATCAACTGTAATACAACTGAAACCGCTAATAATTCAGCATCTT
TGCAGCACCAACTGGTCACTTTGACTAATATCATGCAATCATTGAAAAAG
CAAATCGAGATGAGCACAGGACCAAATTCTGCCCAACTGGCCAATCAACA
ACAAGTTGAACCGATGAACATAGTCAAACCAACCTACTCTATGCAGTTTC
CCATACCGCAATCTAATCAACAAAGCATAGCACAAATGCAACAGAACCCG
CTTAGTAGTATGGGAATGTCTCTACAACAAATCCAAACTTCCCTTGCCAC
TTCAATGGCCAACATGAGTGAACAGCAACACCAACAGTATCTACTTCAGC
AACAAAAGGctcagcaacaacaacaacaacaacaacaacaacaacaacaa
cagcagcagcaacaacagcaacaacaacaacagcaacaacaacagcagca
gcagcagcagcagcagcaacaacaacagcagcagCAGCAGCAAATAATGC
AAATTACTTCATCAGCCCCAGACACACCAGTAAGTATTATAGACCAAATT
GCTAATTCCATAGCAACCACACCACAACAGCACCAATCACTGAATTTCCC
GCCACCATTAGTTCAAGATTCATCATCCCAGCTACCTTTAAACAATGGAT
TCACCAAAAACATGCCGGATAGTTTTGCAAACATTGTCACAAGCATGCAA
ACCAATATACCAAATTCGATACAATTGCAACAATTTCAGCAGCCTGCCGC
CCAACAGCTTTTGTCACCCTCGTATGATCAAATCGCATCATCGTCTTCTC
ACCAAATGCCCATTACTAGTTTCCAAAACACAGTTACAGCATCCATGCAG
CCACAATGGAACCCGCCTTCAATAAATGACGCCATTGCCTCAAATAAGGT
AGGCTTTAAAGAGAATCTAGCTAATCAGCTGGTCACAAATGACCTTAACG
TACATTCAACAAGTaattttttgagtaatttaccACAAATGAATCAGTCA
GACTCGACTGCTCTTCAAATTGATAGTAATGTTATTTTCGCTGACTCTGC
AAATGTCCAGCAGACGCTGGCAGACATAGAAACTAACCAGTTAAGCTCCT
AGTCTATGATCTTTTGCTTGCTTGggacattttttgaaatgattatTCTG
TCttgattttttatcatttttatataattttatgcttaatttttaagtat
gttttttattttgaccttGCTATAAGTAGCTTTGTTTTAGAATTGTACTT
TAGACTATATTGCCAGATAACTCCCCGACTTTTTTTCTCAATACTTTATG
TTATCTTtaagatttcaaaacattcgcCGGGTTTTTCAAACTGTAACAAA
TGTCTCAGGCAAAATGGTCATTTAAgtatgattttattattttctactgt
ctaaaaactgaaaaaatatcagggtaaacttttttattgaaattttattc
atctttAAAGATTTCTGGTATCCAAAccatatttttttatcatttgtttt
ttaaagattgttttatatattattacagtaactaaaaaagaaatattgta
CTCCCAAGCTTATTTTCATTCGACTATAATTGAAAGcttttcttaaattg
tttttactAGTTTTTGATTGGTCATTGATGAAATCATGTCATGACTTCgc
ttttttttgtaaagaatatttttaaagctCCTGATTATTACATTGTGATT
AATTTAATTAATGACTAAATTCTTAATTAAGATTCATTCAAGCCTTTTGA
ACAATTTGTATTTTATGCGTGAAATACGCAGCGAAAGAATGCCACCAAAT
TTGCATaaaattttggcttttttttgaAAGACTGTTTTAGATCATCATGA
TAATTTCTAGTACCTAatttgttttgtaattttttttctagatgTAATGC
TTTCTGACCTTcaaattcaatcaatttttaTGCAATTTTCTCGAAATCAT
CTATTTTTCACAATTTGGTGAAGTGCTAAAACAGGACATTAATTTTTGGT
TCTCTATCTACCATGCTTCAAGTGAATTCAGATTTTCGTAAAGCTCTTTT
AACTTGGAAACTGAAATTTTGTAGCCAAATAAGGTAGAAATTTTGACTAA
TTAAAATTATTTGACTGACTA
Run BLAST on NCBI

transcript from alignment at sc0000267:170267..178947+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017419 ID=TCONS_00017419|Name=TCONS_00017419|organism=Clytia hemisphaerica|type=transcript|length=8681bp|location=Sequence derived from alignment at sc0000267:170267..178947+ (Clytia hemisphaerica)
TTTTATAACGCAATACGTATCTCTGTTTTTATGATTGAGGAGATTACAAC
ATATAccatgagattgggtaacttgcatcagtggaggcaaacatgcatat
cCTTCAAATGACTGACCTTCCTggttattaaaatacaaagttaaatcaaa
acaaaaatggtagagtagatctgcaagcggagctgcgtagttcatttgtt
ttgaaatttttctgctttgattggttacttcgataatcgaatttatcgat
tagtaaGTACCGTCTGGTTTAAAACATAGCTGTTACAATATTTATCTGGT
TTGTATTGGccgagggaaagtaatgtatgttggagtaatttgttattcat
tAGACCGTTGCATTCTCCCAGACAACTATTCCCTGCAAACCTGTTGGAAA
GACTTTAGGCGAacccgaaaaatatttttgtttccaatCCACCACTTTAA
AACTTGACAGTGCTGTTATTTTCTGCAACATGAACTGATAAGAGATAATT
AGGCTGaacttaaaaaaatgtttgtttccGACCAACCCTACCTAGAAAAC
TATTGTCGCAAAAAGTTTATTGCCActttaaaagaaactttttttcttta
ttgtgtCTGTCTGTCTTGTTCTATCTTAAGCTTAAGAATTGTCATTCTag
ctcttttgttttcatttaagtCCTTTCTAGGATTTTTTCgtaaaaaacac
tacatcttgaactTTTTGACTTCACCTCAAAGTTTTTCTTGAAGCCCTAT
CCTAGCCATGAGTTCACTGCCACTCAAATCAGTCCCATTCTCTTTAACTA
TTTTAGGGAAACAGGGAAAACAACATTAAAAATTGTCAATacatctattt
tttataagcataacaatATTAGCATATTAGCCATCCTAAAATATCTAATT
ATTTAATGCTCTTTATTTCAGtgtaaaaagaaaagttgaaaagttgaaaa
ttttcaagaggAAGCTGTTGGAATTTTCAAGCAAGATACTGATTGCAGTC
TCTAAGTATTTTTATTGAACTTTCCAGCAGCATATTGACAATTCTTTCTT
TGTTGCAATGTTGAAAGAAATTCCAGATTATGATCTgctaaaatgataaa
tataatAGTTAAAATAATAAGATTAGAGGCATAATGTTATAAAATTGTTG
CTATATTGTAAAAAGCTTCTTTATCCAGTAGTATTTATCAGtggtttgaa
taaaaaattattctgaaaacttttaaaattaaatcaaaGTTATCATTACA
AAGCAAGGGTAATTTACATACAGTCTAGAATATGTACAAGATATTTTATT
TCAACTTTAAACAAATAtataatttatataattttttttaaattttttat
ttcaaatttagaaaataccTCTTAGCAGcttatttcttttcatttttcag
attaaaaaaacttttttcaaaaccaaaataccattgcaaagaaataaaaa
ttaaacagaTTAAATTTACTTGTTCATTTTAAAAAGAGACCAAATATTTT
GATTCTGTTTCCTGATGCATTCAAATGACCATGAGTTTTCAAAACCTGCT
TCTCCGTCTGTGCCATACATGAATGATTCTGAACTTCAAATCCAAACAAG
ATTCGATGGAACACCCAACAAAACTATCTATGTTACCAGTCTGAATCATG
CTCGCACTCCTTTTGATCTACCAGAAGAATCATGTGACAGTTTCATTGAC
ATTGAAGAAGCCAGTGTCAGCTTACCTGGAAAACCAATGAAAGATGGCTC
TGAAACCTATCATCACTCATTTATGGCAGCGCTTTCATATGATCAAGATT
TGCGCAATCAAAAGAGGGATCAATATGAACCTTATCACAGAATGCAGAAA
TCAACAAATGTATCTCCTCACCAAGAACTGAATGAGTTGATGAAAACTGT
GGATacgaaaaaatcaatttttgaatttgaagcaCCGCTTAGCCCTAAAG
AACCATCAATTGATCTTTTAACATTAGATCCTCCGCGGATAGAAATCATA
GAAGAGCCTGAaactgtaaatttattttatttttgtcctttgtattttct
taattttctaaGTTTAGTAAATCTTTCTTCTAAGAAACTTAGATATTTCA
CTCAAGCATTGGCCCTTATAGCTACACTAAAACTAGTAAAGCAATAAAAC
TACCttcagacaaaaatattttgtgggaagaaatttttgcagaatttaat
ttcctggttttttgccaaatctgcgaaattaaattccgcaaaaatttgag
acaagctggagtttttacaagctcttagttgatttggttggtcattaaga
tgtaataaaagaatctcattacttattctaaagaacacgtcatctctatc
actttaaatgactaattagtgaagtatcttgtaaaaactccagctcatcc
caaaaatttcttcccttaatcgtcagccgtgcaaaattacttgaatctga
ttggtttagagggtgcgattaatcgttaattgcactattaccattttttg
cactcttcgccggggggacacttttgtccccttagaaaattttccctatt
tctaaaaaaactatgatttactaatgattatttactgacgattacctcgc
aatcgtatgttttgtcgtgcaattaacgattaatcactcatGGAATCGTG
CAAATTAcgattttctcctttgttactcgtgattaattgttaattgtact
ccaaaccatacgattactagtactaataagGTATCAGTTCACCAATCTAA
TGCAACAAATTAAATCAAATCAGCTAGATTTTTCCAGGCACATTATATtg
ctttttaaaattcattgtattatgagtaaatttttttattttataatgca
aggcatgaactttttatttgtaattctTGAACAAgataaaaattgatgaa
gaaatATCATGTTTCTTCCATTTTTGTACGTTCCAAGAAAAACTTCTTAT
CTTAGGTTTAACAAATTGGATTTTATACTGCTCATAAATTGATAGTCTCT
AGCTTTTATTTCTCTGAATTGAAAGCTTTTGTTGGTTTTTGGACTCTTTT
CTAGTTTTTGATGGTACATGCATTGGGAAGTATAAGATTCAATTTGGTTT
GCCTTTTTAAGATTAACCTGCATGATTTTAATGAAAGATTCTTTAACTTT
CCAGACATACAGGGCTCGTTATGAAAGTGAGGGATGCAAAGGGCCTATAC
ACGGGGCTTCAGAAACAGGCTTTCCTTCAGTCAAGGTTAGTTTTCTTaat
gttttgttaaaattttatagttagattttctattttttttaagagaTCAT
TCAACAGTAAATTTTTAAAGTGTCTATTATGTTTGTTAGAATAAAATCAT
TCTCTCAATTAGAATCCAACATATTTTTAGATTGTTGGGTATGTTGGACC
TGTCAAGCTTCAGGTGTTTGTTGTTACAAGTGATCTTGAGCCGCATCTTC
ATGCTGCAACAGGACCTGGCTCAAGTAAGACCACTTGTGAAGAAATATGT
CTCGATGATCAATACAAGACTCCTGCAATTGAAATGACCATTACACCTAC
TGACAACAAAGATGAAATGGTTGCTGTGTAAGAATTTGTTTTCTCTAAAA
GTTATTCTCAGTTTTCTCTATTTTTGTattagcctagttaactaagccca
tATAGGCTAGGGCACACAGCTAATGTCAATATAGTGTTTTCAGcgcttaa
aagatttttttatatttactgattttaagtttgccttggaactCTAGGCT
ATTTTTGTAGTTccgtaataaaatttaaaattacaaAAGGCATTACTCAA
AGTTATGgtatgatacaaaacaaaattattcaaGCTGTCTAAGCTGCCAa
caattttaattgttttcctTTAGATTCGACCAATTGAGTATCAGAAGGAT
AAGAAACTTCGAAGCTGACCGTGAATTGAGGAAAAGAGGCATTGAACCTG
CTTCGTGGAAGTCCAAGAAAAAGGAAGCCAAGTTAGCTTTTCGGGCAAAG
ATTCCTTGCACCAATCTACATCCAAATTATGTTATCACAAGCTTTTCAAG
ATCTTTTTTGTGCAGTAAGTCTTTTTCGGTTTTTCTTTAAGATTCTTAAT
GATTTTGCCGCTTGAATGTTTTAGGCTCTCAGGTTGATTGACAGCTTAAA
TCAAATAGTTTATCTATTTCAGAAAACATGGGCAAGGTCAAAGAGCATTC
TATTATACCAGAGAACTTTCTCgtgtttttttagcttttcatttttaAAT
TGACATCCTTATGTTTTTGTTTAGCTGCACCATCTGGAAACCCAGAAATT
TGGTGGATCAGTAAAACAGAATCGTATGCAGAAGGAGGTGATGAACTAGG
ATTTATTGGCAAGAAATTTGCATCTGGTTTCAAAGTGCGTTTCTTCTCCA
GAGAGGATGATGGTATGTAaacttttcagattttaaaaggatatacttga
tatgcgtaagtcatttttcggaggtcaaaaaccggcttttttgggtgctt
ccgttaaaaaatatgacgtcatcttgacttacgcatatcaagaatactGG
TTAAAGAGGGAATTCCAGACCAAAGATTACTTTAATAATCCTGGGAAAGA
TTATCAAAGTATAAGATTGTGTACAAGATAATGATTTGAAATCTTAGTTT
TTTAACTTACATATACCTCATGTTGAAATTCTATAGTTCAGcacaaaaat
gtataatttcaaagGTTTTGCTTAGGACTGTCAGGACTCTTATTTGTCTG
GATACCCCTTTTAAGTATCTTTCTTGAACTAACAGATAAGTATGTGAATA
GTTTCCAGAATTTTTTGTGGAACATTTCTTTGAGAACTCAGATAATACTC
ACAAAATTTCACAACTATTTGATGTTGTTGACATATAAATGCCATAAAAA
GCTATCTTACGAAACCAGCTTTTTTGGATAAAAGTGATATCGAAACACTC
AACTTATTTAACTGAAAGATGTTTAGGCAGTATAATTGAAAAAAGTAGAT
AGCTTTGGACTGAAGTATTTTAATTCATTTAATTCTCTCTGTTCCTTTCC
AGGTAATAGCTGGGAAGTTTATGCTGACATCGATAAAACTAAATCGAATC
TTGTAAGAATCAATTTCTAAGCTTGTTTTCTATCTTTGCTCTGTACCGGT
TGTTTTACACAATCGCAACTTAATTTATGCAGTACAGCATTGCGTAATAT
CATATAGTTGGCTTTTATTAAATTGGATcagtttttaagaaaataaaaaa
aacaatgttttGACATGATCAACAAAAACAATTACATAATTGTATCTTTA
GAATGCATGTGTCGTGAGAATACCACCTTACAAAGATACACTTCTTAAAG
AAAATGCTGTCATCCATGTCGAGATCCGTGTTGGCTCTGATAAAGAACCT
CGATGTAGCGAACCATTCCTATTCACTTACATAACGAAGGCTGCTGAAAG
ATGTCAAAATTGCACACAAATCAAAAGCTATCTGAAAAAGATTTGCAATG
GAGAAACAGCCGACCTTTCTTCTTCACCTGAGAATCTTGATATTAAAACA
GAAGTTCAAAGTCCTGTTCGTAAAATTGTTTctactccaaaaccatcacc
ACAAAGACAACCTGTTCAATCACCAGCTGTCGTCAAATCTGCTCACCCAC
ACAATCCCAATTCCTTGCTAAACATTGCACCAAATCTGAAAACGCTTCTC
AGAACCCAGACTATACCAAATTCACCAGTCGCAAATTTAATGACAATGCC
ATCATCTGGTAGTTCATTGAAGAGTGTTGCTGTCATAGCTCCATCCTCAA
GTGTACCCTTATGCCTACCTTCGACAAAGGTTGTCCAAGGATTGCCAAAA
CCCGCTTTGCCTAATGCAAATGTTTCGATCTTAccaacattgtttcaaaa
ttcTCAGCCACAAATTTCTACACAGATTTATAATGCTATGCAGCCAACAC
TTCAAACAACAGTCCCTATTGCAGCACCTACACCAGCAAATAACCTGATG
GTCAGTTATCAAACTGTAAATCAGCCAGTGCAAGTTCATCAGATCAAAAG
TTCACTACCCAGCAATTCACCGATAAATCAAATAGCACAAGTTGTTTCCA
NAATGGTCAGTTATCCAGCTGTAAATCAGCCAGTGCAAGTTCATCAGATC
AAAAGTTCACTACCCAGCAATTCACCGATAAATCAAATAGCACAAGTTGT
TTCCATGCAGAATCATCCCTCAATAAAGCAAGAACAAGCCTTCATTCAGA
ATTGTCCGACACCCCTGCCCCAACAACAAATCTCAATACAATCTCAAAGT
ATGTTTAACAGTCAAACTGCTGTTACACCACTCCTCTCTATTGCTCCTAC
CATTGGCAATCCTGTACCTGCTACCAGTTGTATGCAACCTAGCAATATCA
CTACCCCTCAAGTGCAATCAGTCAACACCTTACTAATCAACCACCAACAA
CAACACACTCCAAACAATTCAGTTCCTTCATCGCCTCTCCAAAGTTCTCC
AGTCgttcaaaaaatggaaacgTCAACACCACCTGCCCCACTCACCGCTC
CAGTCACCATCCCTACAATCAACTGTAATACAACTGAAACCGCTAATAAT
TCAGCATCTTTGCAGCACCAACTGGTCACTTTGACTAATATCATGCAATC
ATTGAAAAAGCAAATCGAGATGAGCACAGGACCAAATTCTGCCCAACTGG
CCAATCAACAACAAGTTGAACCGATGAACATAGTCAAACCAACCTACTCT
ATGCAGTTTCCCATACCGCAATCTAATCAACAAAGCATAGCACAAATGCA
ACAGAACCCGCTTAGTAGTATGGGAATGTCTCTACAACAAATCCAAACTT
CCCTTGCCACTTCAATGGCCAACATGAGTGAACAGCAACACCAACAGTAT
CTACTTCAGCAACAAAAGGctcagcaacaacaacaacaacaacaacaaca
acaacaacaacagcagcagcaacaacagcaacaacaacaacagcaacaac
aacagcagcagcagcagcagcagcagcaacaacaacagcagcagCAGCAG
CAAATAATGCAAATTACTTCATCAGCCCCAGACACACCAGTAAGTATTAT
AGACCAAATTGCTAATTCCATAGCAACCACACCACAACAGCACCAATCAC
TGAATTTCCCGCCACCATTAGTTCAAGATTCATCATCCCAGCTACCTTTA
AACAATGGATTCACCAAAAACATGCCGGATAGTTTTGCAAACATTGTCAC
AAGCATGCAAACCAATATACCAAATTCGATACAATTGCAACAATTTCAGC
AGCCTGCCGCCCAACAGCTTTTGTCACCCTCGTATGATCAAATCGCATCA
TCGTCTTCTCACCAAATGCCCATTACTAGTTTCCAAAACACAGTTACAGC
ATCCATGCAGCCACAATGGAACCCGCCTTCAATAAATGACGCCATTGCCT
CAAATAAGGTAGGCTTTAAAGAGAATCTAGCTAATCAGCTGGTCACAAAT
GACCTTAACGTACATTCAACAAGTaattttttgagtaatttaccACAAAT
GAATCAGTCAGACTCGACTGCTCTTCAAATTGATAGTAATGTTATTTTCG
CTGACTCTGCAAATGTCCAGCAGACGCTGGCAGACATAGAAACTAACCAG
TTAAGCTCCTAGTCTATGATCTTTTGCTTGCTTGggacattttttgaaat
gattatTCTGTCttgattttttatcatttttatataattttatgcttaat
ttttaagtatgttttttattttgaccttGCTATAAGTAGCTTTGTTTTAG
AATTGTACTTTAGACTATATTGCCAGATAACTCCCCGACTTTTTTTCTCA
ATACTTTATGTTATCTTtaagatttcaaaacattcgcCGGGTTTTTCAAA
CTGTAACAAATGTCTCAGGCAAAATGGTCATTTAAgtatgattttattat
tttctactgtctaaaaactgaaaaaatatcagggtaaacttttttattga
aattttattcatctttAAAGATTTCTGGTATCCAAAccatatttttttat
catttgttttttaaagattgttttatatattattacagtaactaaaaaag
aaatattgtaCTCCCAAGCTTATTTTCATTCGACTATAATTGAAAGcttt
tcttaaattgtttttactAGTTTTTGATTGGTCATTGATGAAATCATGTC
ATGACTTCgcttttttttgtaaagaatatttttaaagctCCTGATTATTA
CATTGTGATTAATTTAATTAATGACTAAATTCTTAATTAAGATTCATTCA
AGCCTTTTGAACAATTTGTATTTTATGCGTGAAATACGCAGCGAAAGAAT
GCCACCAAATTTGCATaaaattttggcttttttttgaAAGACTGTTTTAG
ATCATCATGATAATTTCTAGTACCTAatttgttttgtaattttttttcta
gatgTAATGCTTTCTGACCTTcaaattcaatcaatttttaTGCAATTTTC
TCGAAATCATCTATTTTTCACAATTTGGTGAAGTGCTAAAACAGGACATT
AATTTTTGGTTCTCTATCTACCATGCTTCAAGTGAATTCAGATTTTCGTA
AAGCTCTTTTAACTTGGAAACTGAAATTTTGTAGCCAAATAAGGTAGAAA
TTTTGACTAATTAAAATTATTTGACTGACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009755XLOC_009755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017419-exon-sc0000267-1491911889:170267..171271TCONS_00017419-exon-sc0000267-1491911889:170267..171271Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1510915933:170267..171271TCONS_00017419-exon-sc0000267-1510915933:170267..171271Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1575043694:170267..171271TCONS_00017419-exon-sc0000267-1575043694:170267..171271Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1491911889:173421..173501TCONS_00017419-exon-sc0000267-1491911889:173421..173501Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1510915933:173421..173501TCONS_00017419-exon-sc0000267-1510915933:173421..173501Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1575043694:173421..173501TCONS_00017419-exon-sc0000267-1575043694:173421..173501Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1491911889:173647..173843TCONS_00017419-exon-sc0000267-1491911889:173647..173843Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1510915933:173647..173843TCONS_00017419-exon-sc0000267-1510915933:173647..173843Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1575043694:173647..173843TCONS_00017419-exon-sc0000267-1575043694:173647..173843Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1491911889:174140..174330TCONS_00017419-exon-sc0000267-1491911889:174140..174330Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1510915933:174140..174330TCONS_00017419-exon-sc0000267-1510915933:174140..174330Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1575043694:174140..174330TCONS_00017419-exon-sc0000267-1575043694:174140..174330Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1491911889:174541..174678TCONS_00017419-exon-sc0000267-1491911889:174541..174678Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1510915933:174541..174678TCONS_00017419-exon-sc0000267-1510915933:174541..174678Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1575043694:174541..174678TCONS_00017419-exon-sc0000267-1575043694:174541..174678Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1491911889:175319..175368TCONS_00017419-exon-sc0000267-1491911889:175319..175368Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1510915933:175319..175368TCONS_00017419-exon-sc0000267-1510915933:175319..175368Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1575043694:175319..175368TCONS_00017419-exon-sc0000267-1575043694:175319..175368Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1491911889:175568..176350TCONS_00017419-exon-sc0000267-1491911889:175568..176350Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1510915933:175568..176350TCONS_00017419-exon-sc0000267-1510915933:175568..176350Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1575043694:175568..176350TCONS_00017419-exon-sc0000267-1575043694:175568..176350Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1491911889:176422..178947TCONS_00017419-exon-sc0000267-1491911889:176422..178947Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1510915933:176422..178947TCONS_00017419-exon-sc0000267-1510915933:176422..178947Clytia hemisphaericaexon
TCONS_00017419-exon-sc0000267-1575043694:176422..178947TCONS_00017419-exon-sc0000267-1575043694:176422..178947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:170267..178947 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.97226	3.04965	1.78755	0.760619	25.652	20.2586	15.0161	16.2145	5.84282	8.62403	7.69825	6.48821	6.8051	6.10918	4.12821	5.39668	9.4508	8.74424	6.5149	8.9972	12.5493	13.7181	10.069	12.5717	7.81384	7.89386	2.9311	2.55567	9.01184	8.21594
Blast
[Close]
BLAST of TCONS_00017419 vs. Swiss-Prot (Human)
Match: NFAT5 (Nuclear factor of activated T-cells 5 OS=Homo sapiens GN=NFAT5 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.496e-28
Identity = 90/266 (33.83%), Postives = 133/266 (50.00%), Query Frame = 1 
Query: 1009 YRARYESEGCKGPIHGASETGFPSVKIVGYVGPVKLQVFVV--TSDLEPH--LHAATGPGSSKTTCEEICLDDQYKTPAIEMTITPTDNKDEMVAVFDQLSIRRIRNFEADRELRKRGIEPASWKSKKKEAKLAFRAKIPCTNLHPNYVITSFSRSFLCTAPSGNPEIWWISKTESYAEGGDELGFIGKKFASGFKVRFFSREDDGNSWEVYADIDKTKSNLNACVVRIPPYKDT--LLKENAVIHVEIRVGSDKEPRCSEPFLFT 1788
            +RARY +EG +G +   ++ GFP+VK+ G+  PV LQVFV   +  ++PH    A    G + T C+E+ ++    T  IE+ + P++N   M    D + I ++RN  AD E R   I  A  K K   A+L FR  I   +      + + S   LCT P+G PEI   S      +G +E+  IGK F  G KV F     D NSW+  A+ID    + N  +V++PPY D    L  +  I+V    G   +    +PF +T
Sbjct:  292 HRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKPHGFYQACRVTGRNTTPCKEVDIEG---TTVIEVGLDPSNN---MTLAVDCVGILKLRN--ADVEAR---IGIAGSKKKSTRARLVFRVNIMRKD-GSTLTLQTPSSPILCTQPAGVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQENVSDENSWKSEAEIDMELFHQNHLIVKVPPYHDQHITLPVSVGIYVVTNAGRSHD---VQPFTYT 542
The following BLAST results are available for this feature:
BLAST of TCONS_00017419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFAT51.496e-2833.83Nuclear factor of activated T-cells 5 OS=Homo sapi... [more]
back to top