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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017405 ID=TCONS_00017405|Name=TCONS_00017405|organism=Clytia hemisphaerica|type=transcript|length=7633bpRun BLAST on NCBI protein sequence of TCONS_00017405-protein >TCONS_00017405-protein ID=TCONS_00017405-protein|Name=TCONS_00017405-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2002bp MEKRNKVGPSPQAIVYSSTIVSPMATEASLSSTISAAINSSNFSPADTIPRun BLAST on NCBI transcript from alignment at sc0000267:68450..111810+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017405 ID=TCONS_00017405|Name=TCONS_00017405|organism=Clytia hemisphaerica|type=transcript|length=43361bp|location=Sequence derived from alignment at sc0000267:68450..111810+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000267:68450..111810+ >TCONS_00017405 ID=TCONS_00017405|Name=TCONS_00017405|organism=Clytia hemisphaerica|type=CDS|length=132198bp|location=Sequence derived from alignment at sc0000267:68450..111810+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017405 vs. Swiss-Prot (Human)
Match: GRB1L (GREB1-like protein OS=Homo sapiens GN=GREB1L PE=2 SV=2) HSP 1 Score: 300.442 bits (768), Expect = 1.444e-81 Identity = 219/780 (28.08%), Postives = 357/780 (45.77%), Query Frame = 1
Query: 3877 PIVLISKPLWLMLNSDQ-GDTRGLVHLNSDPNTRWFRSSRPLL---MTSKPDRISRYYRRWTEPRPARKMVXXXXXXXXXXXXXXXFIDDDCDTQSHNEVDQILASPPKRQPIERRDSEQIDHEDKDNEDSDKAQYHPRCFLFSGPPQAGKTGSYLYFAYLLHRMLMRLKRVDVYDNCVTYT------PSTFDDKETCADVDVIANWQFLSKFLDMRREKFSRIHVCCKSNEVHNPIVSSRREEGTNKALV--ILAKTALYDTLHHCDVCKFYREGIASAV---SRTYDYNLTSPGLQESVALKIVVPPIHSKYFDVDEETNTVQRLILPTTDLAQQTVTPEISVHMVKSPILMMSTVGEEEGLLNLFHGMEETDHIHVTFIQYSEVAAYQKQWPNHIFVGLPDSFSKASDSAVKNIMKTFASQNYNSNEEKRSADG-KGGTTWPFVLFVPDNVVMWQKYWKEECYSSDSDEETTEKKERHSNGSVRDSITRDTASLLEFLTSVESNEKLLQHAVIGIRPWSS-FQDEAGIPICVRTFFEDCFLLDVNKTQQIQYSPHVYSGENLDFHLKVLDEKLPTCRFEHFTFMLKVTSNSKWR--TRNGSVLGIEPLSSQDVTRFVCQPDVDTLTPLEANPHHVFQKYLKYTGSTIFPFSVQKPDNPVLVIGGYLNLGPQIDVCVLNNGDFQDKIMNTCCYSSTEFSGLIIYNCSRKLSKDCFSAIKFVKKSKLIFVCEERAELRNEAIRLDLEEDWRFRLRDEYQTATKPVEGLKALHFLTGTKI 6159
P+V++SK + +L S + G L + W S RPLL M+S+ S YYR+WT R Q H D+ ++ + S +HPR L +GPPQ GKTGSYL F +L RML+RL VDVYD T + + E D++ + F D + S ++ + I S+ EE + V +L K A Y+T HHC+ C+ Y + +++ S + + +S L E V L ++P +F ++ ++ + LP + + +++ VKSPI S+ E GLLNLFH ME H+H+ ++ E+ Y+K WPNHI + LP F+ A A + ++K + N + G K WPF++ + D+ V+W + +E S+ + ++ SL L +E+ K++ +A++GI+ WSS ++ R D LL+ + TQ +QY + Y E+ DF+L+ L CRF +F+ M K R ++ E L+ +++C PD + T L A + +K+L++ +FP ++ +PVL I YLN+GP++ +C +++ N C FSGL++Y C + D KF+K + L +C++R+ LR +RL+LE++W+FRLRDE+QTA + K L+FLTG +
Sbjct: 1230 PVVILSKAAYSLLGSQKSGKLPSSSSLLPHADVAWVSSLRPLLNKDMSSEEQ--SLYYRQWTLAR-----------------------------QHH-----------------------ADYSNQLDPASGTRNFHPRRLLLTGPPQVGKTGSYLQFLRILFRMLIRLLEVDVYDEEEINTDHNESSEVSQSEGEPWPDIESFSKMPFDVSVHDPKYSLMSLVYTEKLAGVKQEVIKESKVEEPRKRETVSIMLTKYAAYNTFHHCEQCRQYMDFTSASQMSDSTLHAFTFSSSMLGEEVQLYFIIPKSKESHFVFSKQGKHLESMRLP--------LVSDKNLNAVKSPIFTPSSGRHEHGLLNLFHAMEGISHLHLLVVKEYEMPLYRKYWPNHIMLVLPGMFNNAGVGAARFLIKELSYHNLELERNRLEELGIKRQCVWPFIVMMDDSCVLWNIHSVQE----------------PSSQPMEVGVSSKNVSLKTVLQHIEATPKIVHYAILGIQKWSSKLTSQSLKAPFSRCHVHDFILLNTDLTQNVQYDFNRYFCEDADFNLRTNSSGLLICRFNNFSLMKKHVQVGGQRDFIIKPKIMVSESLAPILPLQYICAPDSEH-TLLAAPAQFLLEKFLQHASYKLFPKAIHNFRSPVLAIDCYLNIGPEVAICYISSRPHSS---NVNC-EGVFFSGLLLYLCDSFVGAD-LKKFKFLKGATLCVICQDRSSLRQTIVRLELEDEWQFRLRDEFQTANSSDD--KPLYFLTGRHV 1923 HSP 2 Score: 276.174 bits (705), Expect = 3.317e-74 Identity = 202/686 (29.45%), Postives = 345/686 (50.29%), Query Frame = 1
Query: 1687 RLKEAATTTLPLNAAIILFTQYLINLDESGIN-KENIELVLNKARIEMSTSTINSLFIQSQSVASTHAQLSLMINLQCSASNGKVRVMTSTISFQNALYKALQWLNETFYVSKVANKKMKTPDFVIILSTPPEGPVEFAVLVTGVSHAKILAESLRIDSVVCKDF-----TESLKKLRAQFSQTDTA--LNRLIKVHERNQGEKVFYPFNEFPGKKLSIEEAEVMHPKQ-APLSAKPYHTKGVFANQAAMAHQLLKQLRNVAEN-PDILDLASFLHVDICIVVPPVASLYYMTVKRLCESGVLNFLGLEQLDVTGNHKLGEKYVITYDDWPASIEKWTKFVNNIQSRNDTLHLLIFDQAQ-----------RFSLP-QGMPDILPNLKEVFESVNVIPVFVTSVPYMFQTNKSFIDPDNEIYWTDTQQGSAFSKYTDDERVMINDQDMLYFGVKELCDSTRWNQQFSLIRTEET----LDWALPKANRLNDINYSIVQGYVLLRLYQASLMVGAGVKPAEPYAVMSFITMVNDIIEAPLHNTDGSGSMLMIRIPNRQLSKHFHDVLLKTRNSLGLQYRFDVIHDDGDSELEIGEHFLARMRRWKIMRGWKEEHVKNWKPKCLEELLDLPCFLILSGEDRSGETLPRSLKYADFNILNQSKFHRSTIEAEIGMCSCYL---MINGGT 3657
+L + L + I+L QYL+ L + +E E ++ KA E + +L I +Q V + QL + L S S V V+ + S + + L+ L+E + ++ PD+V+++ EF V+V G ++ LAES+ S K+ T + L + F T L++L++ ++ +G+ V PF+ + +S +EA M P Q L + +H ++ Q +A +LL Q+ +A++ LDL F VD I+VP L T++R+ +SGVL LGLE+ H+ EKYV+ D+ + K+ F+ ++ TL +L+ D + S P G+ D + N +EV E+ N++ + V+S PY QT +S I NE++W G + ++ LYFG+ E S +W L+R +ET ++ L + RL+ + +V+ Y+L++ Y +LM + ++ +++++D+I +P N G G ML+IR+P+ QL+ + L + R+ LGLQYRF++I + +EL + HF+AR++ W RG + E W P+ ++L LPC +IL+G+D GET PRSLKY D +++ S R+ +E E+G+ CY+ +I G T
Sbjct: 439 KLGLTGSQFLSVENMILLTIQYLVRLGPDQVPLREEFEQIMLKAMQEFTLRE-RALQIGAQCVPVSPGQLPWLARLIASVSQDLVHVVVTQNSLAEGISETLRTLSEMRHYQRL-------PDYVVVICASKIRGNEFCVVVLGQHQSRALAESMLTTSEFLKEISYELITGKVSFLASHFKTTSLGDDLDKLLEKMQQRRGDSVVTPFDGDLNECVSPQEAAAMIPTQNLDLDNETFH---IYQPQLTVARKLLSQVCAIADSGSQSLDLGHFSKVDFIIIVPRSEVLVQQTLQRIRQSGVLVDLGLEENGTA--HQRAEKYVVRLDNEIQT--KFEVFMRRVKQNPYTLFVLVHDNSHVELTSVISGSLSHSEPSHGLADRVINCREVLEAFNLLVLQVSSFPYTLQTQQSRISSSNEVHWIQLDTGED-----------VGCEEKLYFGLSEYSKSLQWGITSPLLRCDETFEKMVNTLLERYPRLHSM---VVRCYLLIQQYSEALMALTTMASLRDHSTPETLSIMDDLISSPGKNKSGRGHMLIIRVPSVQLAMLAKERLQEVRDKLGLQYRFEIILGNPATELSVATHFVARLKSW---RGNEPE---EWIPRTYQDLDGLPCIVILTGKDPLGETFPRSLKYCDLRLIDSSYLTRTALEQEVGLACCYVSKEVIRGPT 1089 HSP 3 Score: 147.517 bits (371), Expect = 6.201e-35 Identity = 71/128 (55.47%), Postives = 87/128 (67.97%), Query Frame = 1
Query: 667 GKCQSGGELRLTELSHKLNNLHVPEGFVLVGAKSPMLTGMMLVAAVDKRYLPGEKDTLTTPGFSGNCVGCGATGFRYFTEFSTHINLKLATQPKKQKHLKCYITQAVDGKWGKGHLIPWKGTETKKRS 1050
G CQ+G +LRL L + + +P GF+LVGAKSP L +LV AVDKR+LP + GFSGNC+GCG GFRYFTEFS HINLKL TQPKKQKHLK Y+ ++ G KG LI WK +++ S
Sbjct: 119 GFCQAGKDLRLVSLC--MEQIDIPAGFLLVGAKSPNLPEHILVCAVDKRFLPDDHGKNALLGFSGNCIGCGERGFRYFTEFSNHINLKLTTQPKKQKHLKYYLVRSSQGVLSKGPLICWKECRSRQSS 244 The following BLAST results are available for this feature:
BLAST of TCONS_00017405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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