TCONS_00017401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017401
Unique NameTCONS_00017401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017401 ID=TCONS_00017401|Name=TCONS_00017401|organism=Clytia hemisphaerica|type=transcript|length=2023bp
gattttttaaaactgTTATAAAAGTATCACAAAATCGAGTACAAATAATG
ACTTTTCAAATACCCCCAGGCGCTTTTGGAACACCTCTgtctttctaatt
tttcaaacattctcaCTAGCAATAAATTCAACGTAAATTGTAAGGTCcta
ttagtttttctttttttgtaattCTGCATTAATAACGGAGTAGatatttc
ttcgctttgcgttCCGCACACCCTATTAAGTTGATTGATTTTGCCAGGCA
AATATTTTTGTACATACCATCAAGCCCATGGTTTTCAATATCCAccaatt
tcttttctttgtttcgAATAATAATTTTCTCTACATTCATTTGTGCGATG
ATTGGATGAAACTCTGCAATATTCTCTTTAGTTAAACGTAAACAAGATAA
AGAAATCGATTTGACTGGTAAACTTTTGAATATTGCTAGATCATTTGGCT
TAAGCTTACAACCAGTGAATTGACGATTGATTGAAAAATGACGAAGAGCT
TTGATTTTGGACAATGTCCGCACCACTTTCTCAATCTTGTCTTTTTCAGA
GATATCAAGACATGAAATATTAAGACGTGTTATCGGCAACTTGGAAAAAT
GTTCGATTAACGTTAGTGGCAAAGGTTTTAGACCAGTAACAACGAAAGAT
TTGAGGTGTTTCAGTTTGGCAAGCGCATCAGCCATTTCTTGGAGAGAGCA
ATCATAAGGTGATGGCTCCCAATACTTCAGACAACATTCTGAAAGCTCAG
TTATCTTTATATCATACTTTGCCATTAATTTGATATCATTTGTTGTGAGC
CTATTGATGTTCGTGGAATATCGATCGTAGTAGATCTCACAATTTTCATT
CTTCGACATAATTTTGCAAAACTCTTCACCATTTTCTTCATTAAATGGAA
GAGAGTCcagagaaatttttattgaTGGGACTTTATCAATGAACATGTCG
AGAATGTAGGGTGATAACGGTGATGGGTCCCAGCTGAAGATCTGGTAAAT
ATGATTAATGTCTAGTTTGACAACATTGTATGTTTCTATCACTTGTAAAA
GATCATAAACATTTTTGTATTTATAATGACAAAACATGTTTGTATTTATA
ATGATAGGCAATGTGCATCGATCGAAGTCTTTGAGGCCAAGTTTCCTTGT
TACATTAATGTCCCCATATAAAAGTTTGACCTGTGGAAAAGCtgtttgaa
tttcttcaaaagaaaatttcgaaaaataccaTATACTCATTTCACGAATT
GGTAAATGTAAAAGCTTTTTGATAAAGTCAGAGTCTTTTCGATCCTCTAA
CTCACGATAGTGACTGAACTTCGGATAGATTCTGTACCAAATTCTGTCCA
AAGTCAAATCGTACATCCTTTTTGAAGTGAGGGAGACCTTTTTGGCATCC
TTCTTAGACAGGAATGATATGACATGTTTCAACATTTCATTCGGTAATAC
GTCAAAACTCATTGTGCTTTCTTGGGAAATTAAATAAGTTTAAGAACCAA
CCACTCTGTTCAAAGCCCGAATGGCTATatggaatcttcaacctttccaa
AGCTTACCTTGGAATCGGCAATACGTCAGAAGTCATCAGTCATTACCGAG
GTAAAGGTAGTTCTGATCTTACAGCAAATGTGTTtgtaaaatagaaaatt
tgctCTTGTCAACAACAATTACCACACAAAGATCAAATCCTTTTCACGAT
AATTTAGTTGATTTCCAAAATCATGCTTTATCAAACCAATNtaaaaatca
aaattttcaaaaaatgaaaaaagcagccccagatattcacccaaggaaca
agtgtgccaaatttcagtcaaatccgaccttttttgaagtgtccaggctg
ccccaaagttttagcNCCAAGTtgatttttatatgttttaaacttttttt
taggtattctaaaagaaaatatattgaaatatGTAaacatagtcgaacgt
gcgcaccgcactgggctcaacttcagattttcccgttattagaaggccca
attgtaacatttcaaatatttag
Run BLAST on NCBI

protein sequence of TCONS_00017401-protein

>TCONS_00017401-protein ID=TCONS_00017401-protein|Name=TCONS_00017401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MSFDVLPNEMLKHVISFLSKKDAKKVSLTSKRMYDLTLDRIWYRIYPKFS
HYRELEDRKDSDFIKKLLHLPIREMSIWYFSKFSFEEIQTAFPQVKLLYG
DINVTRKLGLKDFDRCTLPIIINTNMFCHYKYKNVYDLLQVIETYNVVKL
DINHIYQIFSWDPSPLSPYILDMFIDKVPSIKISLDSLPFNEENGEEFCK
IMSKNENCEIYYDRYSTNINRLTTNDIKLMAKYDIKITELSECCLKYWEP
SPYDCSLQEMADALAKLKHLKSFVVTGLKPLPLTLIEHFSKLPITRLNIS
CLDISEKDKIEKVVRTLSKIKALRHFSINRQFTGCKLKPNDLAIFKSLPV
KSISLSCLRLTKENIAEFHPIIAQMNVEKIIIRNKEKKLVDIENHGLDGM
YKNICLAKSINLIGCAERKAKKYLLRY
Run BLAST on NCBI

transcript from alignment at sc0000266:357025..359047

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017401 ID=TCONS_00017401|Name=TCONS_00017401|organism=Clytia hemisphaerica|type=transcript|length=2023bp|location=Sequence derived from alignment at sc0000266:357025..359047 (Clytia hemisphaerica)
ctaaatatttgaaatgttacaattgggccttctaataacgggaaaatctg
aagttgagcccagtgcggtgcgcacgttcgactatgttTACatatttcaa
tatattttcttttagaatacctaaaaaaaagtttaaaacatataaaaatc
aACTTGGNgctaaaactttggggcagcctggacacttcaaaaaaggtcgg
atttgactgaaatttggcacacttgttccttgggtgaatatctggggctg
cttttttcattttttgaaaattttgatttttaNATTGGTTTGATAAAGCA
TGATTTTGGAAATCAACTAAATTATCGTGAAAAGGATTTGATCTTTGTGT
GGTAATTGTTGTTGACAAGagcaaattttctattttacaAACACATTTGC
TGTAAGATCAGAACTACCTTTACCTCGGTAATGACTGATGACTTCTGACG
TATTGCCGATTCCAAGGTAAGCTttggaaaggttgaagattccatATAGC
CATTCGGGCTTTGAACAGAGTGGTTGGTTCTTAAACTTATTTAATTTCCC
AAGAAAGCACAATGAGTTTTGACGTATTACCGAATGAAATGTTGAAACAT
GTCATATCATTCCTGTCTAAGAAGGATGCCAAAAAGGTCTCCCTCACTTC
AAAAAGGATGTACGATTTGACTTTGGACAGAATTTGGTACAGAATCTATC
CGAAGTTCAGTCACTATCGTGAGTTAGAGGATCGAAAAGACTCTGACTTT
ATCAAAAAGCTTTTACATTTACCAATTCGTGAAATGAGTATAtggtattt
ttcgaaattttcttttgaagaaattcaaacaGCTTTTCCACAGGTCAAAC
TTTTATATGGGGACATTAATGTAACAAGGAAACTTGGCCTCAAAGACTTC
GATCGATGCACATTGCCTATCATTATAAATACAAACATGTTTTGTCATTA
TAAATACAAAAATGTTTATGATCTTTTACAAGTGATAGAAACATACAATG
TTGTCAAACTAGACATTAATCATATTTACCAGATCTTCAGCTGGGACCCA
TCACCGTTATCACCCTACATTCTCGACATGTTCATTGATAAAGTCCCAtc
aataaaaatttctctgGACTCTCTTCCATTTAATGAAGAAAATGGTGAAG
AGTTTTGCAAAATTATGTCGAAGAATGAAAATTGTGAGATCTACTACGAT
CGATATTCCACGAACATCAATAGGCTCACAACAAATGATATCAAATTAAT
GGCAAAGTATGATATAAAGATAACTGAGCTTTCAGAATGTTGTCTGAAGT
ATTGGGAGCCATCACCTTATGATTGCTCTCTCCAAGAAATGGCTGATGCG
CTTGCCAAACTGAAACACCTCAAATCTTTCGTTGTTACTGGTCTAAAACC
TTTGCCACTAACGTTAATCGAACATTTTTCCAAGTTGCCGATAACACGTC
TTAATATTTCATGTCTTGATATCTCTGAAAAAGACAAGATTGAGAAAGTG
GTGCGGACATTGTCCAAAATCAAAGCTCTTCGTCATTTTTCAATCAATCG
TCAATTCACTGGTTGTAAGCTTAAGCCAAATGATCTAGCAATATTCAAAA
GTTTACCAGTCAAATCGATTTCTTTATCTTGTTTACGTTTAACTAAAGAG
AATATTGCAGAGTTTCATCCAATCATCGCACAAATGAATGTAGAGAAAAT
TATTATTcgaaacaaagaaaagaaattggTGGATATTGAAAACCATGGGC
TTGATGGTATGTACAAAAATATTTGCCTGGCAAAATCAATCAACTTAATA
GGGTGTGCGGaacgcaaagcgaagaaatatCTACTCCGTTATTAATGCAG
aattacaaaaaaagaaaaactaatagGACCTTACAATTTACGTTGAATTT
ATTGCTAGtgagaatgtttgaaaaattagaaagacAGAGGTGTTCCAAAA
GCGCCTGGGGGTATTTGAAAAGTCATTATTTGTACTCGATTTTGTGATAC
TTTTATAAcagttttaaaaaatc

Coding sequence (CDS) from alignment at sc0000266:357025..359047

>TCONS_00017401 ID=TCONS_00017401|Name=TCONS_00017401|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000266:357025..359047 (Clytia hemisphaerica)
ATGAGTTTTGACGTATTACCGAATGAAATGTTGAAACATGTCATATCATT
CCTGTCTAAGAAGGATGCCAAAAAGGTCTCCCTCACTTCAAAAAGGATGT
ACGATTTGACTTTGGACAGAATTTGGTACAGAATCTATCCGAAGTTCAGT
CACTATCGTGAGTTAGAGGATCGAAAAGACTCTGACTTTATCAAAAAGCT
TTTACATTTACCAATTCGTGAAATGAGTATAtggtatttttcgaaatttt
cttttgaagaaattcaaacaGCTTTTCCACAGGTCAAACTTTTATATGGG
GACATTAATGTAACAAGGAAACTTGGCCTCAAAGACTTCGATCGATGCAC
ATTGCCTATCATTATAAATACAAACATGTTTTGTCATTATAAATACAAAA
ATGTTTATGATCTTTTACAAGTGATAGAAACATACAATGTTGTCAAACTA
GACATTAATCATATTTACCAGATCTTCAGCTGGGACCCATCACCGTTATC
ACCCTACATTCTCGACATGTTCATTGATAAAGTCCCAtcaataaaaattt
ctctgGACTCTCTTCCATTTAATGAAGAAAATGGTGAAGAGTTTTGCAAA
ATTATGTCGAAGAATGAAAATTGTGAGATCTACTACGATCGATATTCCAC
GAACATCAATAGGCTCACAACAAATGATATCAAATTAATGGCAAAGTATG
ATATAAAGATAACTGAGCTTTCAGAATGTTGTCTGAAGTATTGGGAGCCA
TCACCTTATGATTGCTCTCTCCAAGAAATGGCTGATGCGCTTGCCAAACT
GAAACACCTCAAATCTTTCGTTGTTACTGGTCTAAAACCTTTGCCACTAA
CGTTAATCGAACATTTTTCCAAGTTGCCGATAACACGTCTTAATATTTCA
TGTCTTGATATCTCTGAAAAAGACAAGATTGAGAAAGTGGTGCGGACATT
GTCCAAAATCAAAGCTCTTCGTCATTTTTCAATCAATCGTCAATTCACTG
GTTGTAAGCTTAAGCCAAATGATCTAGCAATATTCAAAAGTTTACCAGTC
AAATCGATTTCTTTATCTTGTTTACGTTTAACTAAAGAGAATATTGCAGA
GTTTCATCCAATCATCGCACAAATGAATGTAGAGAAAATTATTATTcgaa
acaaagaaaagaaattggTGGATATTGAAAACCATGGGCTTGATGGTATG
TACAAAAATATTTGCCTGGCAAAATCAATCAACTTAATAGGGTGTGCGGa
acgcaaagcgaagaaatatCTACTCCGTTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009748XLOC_009748Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017401-proteinTCONS_00017401-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017401-exon-sc0000266-1491911889:357025..359047TCONS_00017401-exon-sc0000266-1491911889:357025..359047Clytia hemisphaericaexon
TCONS_00017401-exon-sc0000266-1510915933:357025..359047TCONS_00017401-exon-sc0000266-1510915933:357025..359047Clytia hemisphaericaexon
TCONS_00017401-exon-sc0000266-1575043694:357025..359047TCONS_00017401-exon-sc0000266-1575043694:357025..359047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:357025..359047 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.82871	3.13336	4.01308	4.25733	3.70025	2.37077	2.83224	3.36343	1.74552	2.2958	2.05799	2.12565	2.09091	1.74829	1.63147	2.67124	1.81438	2.34806	2.26262	2.3947	3.3601	3.24429	3.55721	3.82763	2.1167	2.90173	2.69584	3.16061	3.33882	2.86994
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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