TCONS_00017399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017399
Unique NameTCONS_00017399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017399 ID=TCONS_00017399|Name=TCONS_00017399|organism=Clytia hemisphaerica|type=transcript|length=243bp
GCGATGGCTTTTTATGGAAAACATCATATCATATTATACAGCGTAGCTAC
AGGAATGGACGAGACACAACCTCGACGCTCTTTCCTCGATAAATCGCAAC
ACAAAATCAAGAGACAAAACTCGAAGGAAGGAATACCAGTTTATTATGGT
AATACAAGTATTGTGGAGAATAAAAATGCTGGTTTGACTCTACCAAACAA
TTTGGAAGGACATTTCGTCGACAATGGGCAATCAATATTATCT
Run BLAST on NCBI

transcript from alignment at sc0000266:324493..324735

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017399 ID=TCONS_00017399|Name=TCONS_00017399|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at sc0000266:324493..324735 (Clytia hemisphaerica)
AGATAATATTGATTGCCCATTGTCGACGAAATGTCCTTCCAAATTGTTTG
GTAGAGTCAAACCAGCATTTTTATTCTCCACAATACTTGTATTACCATAA
TAAACTGGTATTCCTTCCTTCGAGTTTTGTCTCTTGATTTTGTGTTGCGA
TTTATCGAGGAAAGAGCGTCGAGGTTGTGTCTCGTCCATTCCTGTAGCTA
CGCTGTATAATATGATATGATGTTTTCCATAAAAAGCCATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009746XLOC_009746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017399-exon-sc0000266-1491911889:324493..324735TCONS_00017399-exon-sc0000266-1491911889:324493..324735Clytia hemisphaericaexon
TCONS_00017399-exon-sc0000266-1510915933:324493..324735TCONS_00017399-exon-sc0000266-1510915933:324493..324735Clytia hemisphaericaexon
TCONS_00017399-exon-sc0000266-1575043694:324493..324735TCONS_00017399-exon-sc0000266-1575043694:324493..324735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:324493..324735 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.970469	1.89891	4.62347	0.913382	6.61174	13.4113	3.61137	8.05188	3.47349	3.99584	7.41052	7.10391	0	1.0446	4.50403	7.25448	5.46679	3.81374	10.7732	13.3391	0.982751	0	4.60123	5.74909	1.17527	1.25428	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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