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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017395 ID=TCONS_00017395|Name=TCONS_00017395|organism=Clytia hemisphaerica|type=transcript|length=2547bp
tttttgaagtgAAGCTCGATTAATTTTGACCCATTCATTTTTTATGTGAT
CTGAACCTAAGAAGCTGCTAAATAAAGATTATAacttatttcaaaatctt
tacaaaatcATATTAATATATCATTTACTAATTAAAGTAATGTAAAGAAA
ATAAACTGATCATCaagataaaatatttgttacaAAGTGGTAGCAAGTAA
TTATTGATCACAAATTAttgttttggaaaataaaatgtgCTGTACCGGTA
TGTCAGCAAACACCAGCACTCAAGGAAAAGCAATGAGCAGGGAACGTTTT
TTGAAGACTGCTCAGAGGAAGAAATCActgaataaaaacaaaggagagCC
ATGTTGTATGAGAACTGAAGCCCTGTTAGAGGCTGCTCTAACTCGAATTA
GATCTGAATGGAGGAGAGAACGTGAATGTAGTGAAGAAGATGATTTTCTT
GAACCTTCcaataagaaaatgaaattagacAATTATGATATTGATGAATT
TGATTTCAATGATGGAaccgaagaagaagaaatggaGTCATGTTTTGATA
CATGTACCATGATCAATAATAAAGAACTTTCGTCGAAAGCGCTCTGGGAT
GATCCTGAGCAAGTGGAggactttttcaaaaaggtttccGCACATGGACA
TGGTGATAGTAGTAGCAAATGTGAAAACTCACCTTGCAATGAAGACTCAA
TAAATAATAACAAATGTTTAAATAAGGACATAATGAAATCAAGTGGAACT
GTCGACGGAACTTGCACTGCGATAGATTTTGGTGATACATTCCTAGACTC
TGTTGATGAATTGTCATCAGATTTACCGGCCTATAATCCTAATTATGATG
TTGGCTCATTCACAATCGAGTTTGACAATATTTACAAAGaactatttcaa
aatttcatcggTGTTGATAGTTACAGACAGACAGAAACAACTTGCTCGTA
GTTAAATTTGAAGCTTTCTTAGACAAAATTTGTAATTTATTAGATAATTA
GATCTTTGgcaattgaaaaattattgtgTATATATTGCAATTATTTTTAG
TGgatgatttttagaatttttgttgAAACTCCAAAAAGGTGCCTTCGAAA
ACCCAATGAATGCAAATAAAAACAGACAAATAAACCTGCACTTTCCAAAT
GCATTTCAATATTGCTTTAGTTTTACAAGTAATGCTTCTCTAAGTCTTGA
GAATTTTAAACAGACTTTAAAAAGACTCTTTAATTCTTGAGTTTCCATAC
AGCTTATAATCAAGaaaattttggttgaaatttgtttatttttggatTAA
TTAGTTACTGTAAATAAATTGTTAATTTATTATTATAGCCattacttttt
tagttttatttagGAAATTCCAAGAACTGGAGGTTTTCATATTTTAaatt
aattatattttattccaTTGGGAATGTCAGTTTtagttttaaaatctttt
tcataGTGTAGTTTTTTATGAAttataaatatcaaaataatactTTTAGA
GTTAAAAATTCTGATTGTTTTCTTaacataaataaataaacattcaaaaa
tcaCCAAAGTCTTTTTAAGActgtaaaagttttctttttctggGCTGCAA
AAGTTTTGCAAGACATTTATTATTAGTCTTGTTATtcacaagtttttttt
aaagagtgaaATAAGGTGactttactttttgaaaaaaaattatctatgAA
TTCTATCATTTTGTCTCTATAGGGTTATCAATACATTTTGTTGTAAAGTT
GTTCCTACTATCTGAATATAGAGCTTTAATAAAacatttcgttttttttt
tcatttataattatgctttttaagttttattgtAACAGAATTTTTCACCT
GCTTTTCTAGTTCCTAGTTTTCAAAATCTCTGAACAGCCATTTATTGTTA
AAGATAGGTATATAGATTTTTTATCCGAAATGTTGGGATAGAGAAAAAAT
CGTTTAAAAAGGCTgttaataaaatataatattaaTCCAACAATAGTTga
gttttttaaacaaaaaaatgaaaaacctttggtgtttatttttatattat
atgaAATATCATCATCTAAAACTTCTTAAAATATCTAACATTTCAAATGT
TATTCTTTTtactattattttttttgaaccaATGAATATGTATGTAAATA
GCATTTTTATTGATCATAactcgaaaaaaatgtttttttatcaaaataga
gaaaaaaagtaATTAACTGCATAACTTGTCGAAATAGAACTCTTTTCGTT
TTGAAaaagatataataaaaaaagacagtGATACTGTTTTAATAAACTTT
TGTTCCCTCTGAATTTCTACcaatttgaaaagatattttgtaaacAATCT
TTAAATTGTCATTTCCTGAAAAGATTATTTGCAACTCCTGTGAAGATTTG
TTGATTTTAATACTTAATTACCTGCATCAAACCGAAgtcagatttttttt
tattcaaacaaaattaccctgaatataatatttttgacaTGTTTGTTTGT
AAGCATTAGGTATTATTAACAAATCGAATATTACTGCATAATTGGCG Run BLAST on NCBI protein sequence of TCONS_00017395-protein >TCONS_00017395-protein ID=TCONS_00017395-protein|Name=TCONS_00017395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MCCTGMSANTSTQGKAMSRERFLKTAQRKKSLNKNKGEPCCMRTEALLEA
ALTRIRSEWRRERECSEEDDFLEPSNKKMKLDNYDIDEFDFNDGTEEEEM
ESCFDTCTMINNKELSSKALWDDPEQVEDFFKKVSAHGHGDSSSKCENSP
CNEDSINNNKCLNKDIMKSSGTVDGTCTAIDFGDTFLDSVDELSSDLPAY
NPNYDVGSFTIEFDNIYKELFQNFIGVDSYRQTETTCS Run BLAST on NCBI transcript from alignment at sc0000266:261003..263549 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017395 ID=TCONS_00017395|Name=TCONS_00017395|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at sc0000266:261003..263549 (Clytia hemisphaerica)
CGCCAATTATGCAGTAATATTCGATTTGTTAATAATACCTAATGCTTACA
AACAAACAtgtcaaaaatattatattcagggtaattttgtttgaataaaa
aaaaatctgacTTCGGTTTGATGCAGGTAATTAAGTATTAAAATCAACAA
ATCTTCACAGGAGTTGCAAATAATCTTTTCAGGAAATGACAATTTAAAGA
TTgtttacaaaatatcttttcaaattgGTAGAAATTCAGAGGGAACAAAA
GTTTATTAAAACAGTATCactgtctttttttattatatctttTTCAAAAC
GAAAAGAGTTCTATTTCGACAAGTTATGCAGTTAATtactttttttctct
attttgataaaaaaacatttttttcgagtTATGATCAATAAAAATGCTAT
TTACATACATATTCATtggttcaaaaaaaataatagtaAAAAGAATAACA
TTTGAAATGTTAGATATTTTAAGAAGTTTTAGATGATGATATTtcatata
atataaaaataaacaccaaaggtttttcatttttttgtttaaaaaactcA
ACTATTGTTGGAttaatattatattttattaacAGCCTTTTTAAACGATT
TTTTCTCTATCCCAACATTTCGGATAAAAAATCTATATACCTATCTTTAA
CAATAAATGGCTGTTCAGAGATTTTGAAAACTAGGAACTAGAAAAGCAGG
TGAAAAATTCTGTTacaataaaacttaaaaagcataattataaatgaaaa
aaaaaacgaaatgtTTTATTAAAGCTCTATATTCAGATAGTAGGAACAAC
TTTACAACAAAATGTATTGATAACCCTATAGAGACAAAATGATAGAATTc
atagataattttttttcaaaaagtaaagtCACCTTATttcactctttaaa
aaaaacttgtgaATAACAAGACTAATAATAAATGTCTTGCAAAACTTTTG
CAGCccagaaaaagaaaacttttacagTCTTAAAAAGACTTTGGtgattt
ttgaatgtttatttatttatgttAAGAAAACAATCAGAATTTTTAACTCT
AAAagtattattttgatatttataaTTCATAAAAAACTACACtatgaaaa
agattttaaaactaAAACTGACATTCCCAAtggaataaaatataattaat
tTAAAATATGAAAACCTCCAGTTCTTGGAATTTCctaaataaaactaaaa
aagtaatGGCTATAATAATAAATTAACAATTTATTTACAGTAACTAATTA
atccaaaaataaacaaatttcaaccaaaattttCTTGATTATAAGCTGTA
TGGAAACTCAAGAATTAAAGAGTCTTTTTAAAGTCTGTTTAAAATTCTCA
AGACTTAGAGAAGCATTACTTGTAAAACTAAAGCAATATTGAAATGCATT
TGGAAAGTGCAGGTTTATTTGTCTGTTTTTATTTGCATTCATTGGGTTTT
CGAAGGCACCTTTTTGGAGTTTcaacaaaaattctaaaaatcatcCACTA
AAAATAATTGCAATATATAcacaataatttttcaattgcCAAAGATCTAA
TTATCTAATAAATTACAAATTTTGTCTAAGAAAGCTTCAAATTTAACTAC
GAGCAAGTTGTTTCTGTCTGTCTGTAACTATCAACAccgatgaaattttg
aaatagttCTTTGTAAATATTGTCAAACTCGATTGTGAATGAGCCAACAT
CATAATTAGGATTATAGGCCGGTAAATCTGATGACAATTCATCAACAGAG
TCTAGGAATGTATCACCAAAATCTATCGCAGTGCAAGTTCCGTCGACAGT
TCCACTTGATTTCATTATGTCCTTATTTAAACATTTGTTATTATTTATTG
AGTCTTCATTGCAAGGTGAGTTTTCACATTTGCTACTACTATCACCATGT
CCATGTGCggaaacctttttgaaaaagtccTCCACTTGCTCAGGATCATC
CCAGAGCGCTTTCGACGAAAGTTCTTTATTATTGATCATGGTACATGTAT
CAAAACATGACtccatttcttcttcttcggtTCCATCATTGAAATCAAAT
TCATCAATATCATAATTgtctaatttcattttcttattgGAAGGTTCAAG
AAAATCATCTTCTTCACTACATTCACGTTCTCTCCTCCATTCAGATCTAA
TTCGAGTTAGAGCAGCCTCTAACAGGGCTTCAGTTCTCATACAACATGGc
tctcctttgtttttattcagTGATTTCTTCCTCTGAGCAGTCTTCAAAAA
ACGTTCCCTGCTCATTGCTTTTCCTTGAGTGCTGGTGTTTGCTGACATAC
CGGTACAGcacattttattttccaaaacaaTAATTTGTGATCAATAATTA
CTTGCTACCACTTtgtaacaaatattttatcttGATGATCAGTTTATTTT
CTTTACATTACTTTAATTAGTAAATGATATATTAATATgattttgtaaag
attttgaaataagtTATAATCTTTATTTAGCAGCTTCTTAGGTTCAGATC
ACATAAAAAATGAATGGGTCAAAATTAATCGAGCTTcacttcaaaaa Coding sequence (CDS) from alignment at sc0000266:261003..263549 >TCONS_00017395 ID=TCONS_00017395|Name=TCONS_00017395|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0000266:261003..263549 (Clytia hemisphaerica)
CTACGAGCAAGTTGTTTCTGTCTGTCTGTAACTATCAACAccgatgaaat
tttgaaatagttCTTTGTAAATATTGTCAAACTCGATTGTGAATGAGCCA
ACATCATAATTAGGATTATAGGCCGGTAAATCTGATGACAATTCATCAAC
AGAGTCTAGGAATGTATCACCAAAATCTATCGCAGTGCAAGTTCCGTCGA
CAGTTCCACTTGATTTCATTATGTCCTTATTTAAACATTTGTTATTATTT
ATTGAGTCTTCATTGCAAGGTGAGTTTTCACATTTGCTACTACTATCACC
ATGTCCATGTGCggaaacctttttgaaaaagtccTCCACTTGCTCAGGAT
CATCCCAGAGCGCTTTCGACGAAAGTTCTTTATTATTGATCATGGTACAT
GTATCAAAACATGACtccatttcttcttcttcggtTCCATCATTGAAATC
AAATTCATCAATATCATAATTgtctaatttcattttcttattgGAAGGTT
CAAGAAAATCATCTTCTTCACTACATTCACGTTCTCTCCTCCATTCAGAT
CTAATTCGAGTTAGAGCAGCCTCTAACAGGGCTTCAGTTCTCATACAACA
TGGctctcctttgtttttattcagTGATTTCTTCCTCTGAGCAGTCTTCA
AAAAACGTTCCCTGCTCATTGCTTTTCCTTGAGTGCTGGTGTTTGCTGAC
ATACCGGTACAGcacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017395-exon-sc0000266-1491911889:261003..263549 | TCONS_00017395-exon-sc0000266-1491911889:261003..263549 | Clytia hemisphaerica | exon |
| TCONS_00017395-exon-sc0000266-1510915933:261003..263549 | TCONS_00017395-exon-sc0000266-1510915933:261003..263549 | Clytia hemisphaerica | exon |
| TCONS_00017395-exon-sc0000266-1575043694:261003..263549 | TCONS_00017395-exon-sc0000266-1575043694:261003..263549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000266 | supercontig | sc0000266:261003..263549 . |
Blast
The following BLAST results are available for this feature:
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