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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017393 ID=TCONS_00017393|Name=TCONS_00017393|organism=Clytia hemisphaerica|type=transcript|length=2012bp
TTTATTTACGAGTTTTTAAGCCGAAATAATCGATTAAACTTAAGGTAATT
CGAACTGAAAGGTCACCTGAtggtttttcttttaatttaactGTGAAATA
GGGATGGGCTAAAACAAAAGCTTGATGATGGAAAAGTTTCAGTAAAATGT
TATTCGAGTAGATTATGAAGTTCTTGATCGTTTTTTTCATGTTACATTGG
AGCGACAGaggtttgtttgattttcagaaaGAAGCAGAACCAGAAGTTAA
AGAATGAAGTTTGTAGCAGCCCTGTACTTTACACCACTTCTATTGCTCAA
ACAAAACAAACCTACGGCAGCCGATCAAGCTCCAATCATCCAATTTTTCT
ATTGGAACGTAGATCCATTCTTCTCGCTCAACGTCAAACGCGGAAAAGTG
ATTATAAAAGGTACCATAGCAGATAGTTTCAAATTGGCAGCTCTACATTG
CCGGCGACCGAGTTACAATACGGCAAACAATTGTAGTAGTAGAGGGAAGC
ATACTTCAAgtctacatcaaaacatcagtaCAAATTCTCAGGATTTAAGA
ACAAGAAAATTTATCGAATACATCAAAGTGGGTATCGGACATCAAAGATT
TCACGATGTTATCTTTGCTCCTGATCGACTGAGCAAACTACAACAGCCAG
TACCACAGTACCGAATCGATTGTGATCGACCATTGCTGCAAATATGGGGA
GTTCTTTTCATGGATAAATCAGATGAATGGATTGATTTGCAGTTGAAAAA
TTTAACGACATTCAGGTACACCACAAGTGAAAAGTTGGCTCTTTTAATGC
CACGAAAATCTATTCTAGCTGTCACCAAAATATTACACGGCATCTCAAAT
TGTGCTGAACCGATATTTCTTTCAGTAATTTTCGCATTGATTTTTGGTTC
CTTAATCTGGTTTTCTGAACACCAACAAAACGATGACATAAGTGAAAATT
TTGCAAGTGGTATACAAGATGCAGTTTGGTGTTGTTTTGTTACCATGACG
ACTATTGGTTATGGTGATGTTTACCCGAAAACGTTTATCGGGAAACTGAT
TATGTGGGTTTGGATTACGATCGGGTTACTGTTAATCGCCGTGATGTGTG
GCAATGTTTATATGTCAGTGGATAGTCCAccagaaattttcgaaaaacgg
ATTGCAGTCCAGCCAAACACTACAGCTGAGAGGTATGCAAGAGATTACCT
AGGTGCAACGGTTATTCATGCAGGAACGTATaggaaattatttaaaaagN
AGAGATTACCTAGGTGCAACGGTTATTCATGCAGGGACGTATaggaaatt
atttaaaaaagtggaaaattctGAGGCGGATGCAGCGTTGATGAACAGCG
ATGTGTATTCAGTCTATCAGAGATTTATGGGGAAACAGATTGCCAAAGAA
CAACCCTTACACGTTGTTAAAGAGTACGAAGTTGAGCAGCCTATCCTAAT
GGcgtttcaaaacgaggctacaATGTCACGTGACGCTAAAGAGTTGTTTG
AGTGCATGACTATAAAGAATAAGGAATTGATTTTCGATATCCCTGTTTTA
CAACATCCGACACAGTGTCGCGTTGAGACGGTTTACAGTAGCAAGTTGTC
CGTACACTCATTCTTATTGCTGTTTCTGGCAACACTGGCTTTGCTGGCTG
TCTGTGTGGCGTATGGTTTTTGTTTGGACAAGATTCAAATCAGACGGTGT
GTCCAAGAGTAGATCATTGATATTTTAAGAAACGACGACAAAGATAAATG
TTTGGGGTAAAATGCTGTAGTTTGGAGGCTCAAAACAACTTTAGCAATGT
AGGCCCTAAAAAGAGAAGGGATTAACGGAATTATACCGCTCAAGAACGAC
AATAATACTGAACGAGCAAGagaacaacttttttttaaatttaactttta
tactgattaaatttgttttaaacTGCCTCTGAGAACACTaggatttctat
ttttttacatctgctttttttaacaaagaaccTGTGCTCTTTATTTACTG
CTTCAAAACCAC Run BLAST on NCBI protein sequence of TCONS_00017393-protein >TCONS_00017393-protein ID=TCONS_00017393-protein|Name=TCONS_00017393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MKFVAALYFTPLLLLKQNKPTAADQAPIIQFFYWNVDPFFSLNVKRGKVI
IKGTIADSFKLAALHCRRPSYNTANNCSSRGKHTSSLHQNISTNSQDLRT
RKFIEYIKVGIGHQRFHDVIFAPDRLSKLQQPVPQYRIDCDRPLLQIWGV
LFMDKSDEWIDLQLKNLTTFRYTTSEKLALLMPRKSILAVTKILHGISNC
AEPIFLSVIFALIFGSLIWFSEHQQNDDISENFASGIQDAVWCCFVTMTT
IGYGDVYPKTFIGKLIMWVWITIGLLLIAVMCGNVYMSVDSPPEIFEKRI
AVQPNTTAERYARDYLGATVIHAGTYRKLFKKXRLPRCNGYSCRDV Run BLAST on NCBI transcript from alignment at sc0000266:238028..240039 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017393 ID=TCONS_00017393|Name=TCONS_00017393|organism=Clytia hemisphaerica|type=transcript|length=2012bp|location=Sequence derived from alignment at sc0000266:238028..240039 (Clytia hemisphaerica)
GTGGTTTTGAAGCAGTAAATAAAGAGCACAggttctttgttaaaaaaagc
agatgtaaaaaaatagaaatcctAGTGTTCTCAGAGGCAgtttaaaacaa
atttaatcagtataaaagttaaatttaaaaaaaagttgttctCTTGCTCG
TTCAGTATTATTGTCGTTCTTGAGCGGTATAATTCCGTTAATCCCTTCTC
TTTTTAGGGCCTACATTGCTAAAGTTGTTTTGAGCCTCCAAACTACAGCA
TTTTACCCCAAACATTTATCTTTGTCGTCGTTTCTTAAAATATCAATGAT
CTACTCTTGGACACACCGTCTGATTTGAATCTTGTCCAAACAAAAACCAT
ACGCCACACAGACAGCCAGCAAAGCCAGTGTTGCCAGAAACAGCAATAAG
AATGAGTGTACGGACAACTTGCTACTGTAAACCGTCTCAACGCGACACTG
TGTCGGATGTTGTAAAACAGGGATATCGAAAATCAATTCCTTATTCTTTA
TAGTCATGCACTCAAACAACTCTTTAGCGTCACGTGACATtgtagcctcg
ttttgaaacgCCATTAGGATAGGCTGCTCAACTTCGTACTCTTTAACAAC
GTGTAAGGGTTGTTCTTTGGCAATCTGTTTCCCCATAAATCTCTGATAGA
CTGAATACACATCGCTGTTCATCAACGCTGCATCCGCCTCagaattttcc
acttttttaaataatttcctATACGTCCCTGCATGAATAACCGTTGCACC
TAGGTAATCTCTNctttttaaataatttcctATACGTTCCTGCATGAATA
ACCGTTGCACCTAGGTAATCTCTTGCATACCTCTCAGCTGTAGTGTTTGG
CTGGACTGCAATccgtttttcgaaaatttctggTGGACTATCCACTGACA
TATAAACATTGCCACACATCACGGCGATTAACAGTAACCCGATCGTAATC
CAAACCCACATAATCAGTTTCCCGATAAACGTTTTCGGGTAAACATCACC
ATAACCAATAGTCGTCATGGTAACAAAACAACACCAAACTGCATCTTGTA
TACCACTTGCAAAATTTTCACTTATGTCATCGTTTTGTTGGTGTTCAGAA
AACCAGATTAAGGAACCAAAAATCAATGCGAAAATTACTGAAAGAAATAT
CGGTTCAGCACAATTTGAGATGCCGTGTAATATTTTGGTGACAGCTAGAA
TAGATTTTCGTGGCATTAAAAGAGCCAACTTTTCACTTGTGGTGTACCTG
AATGTCGTTAAATTTTTCAACTGCAAATCAATCCATTCATCTGATTTATC
CATGAAAAGAACTCCCCATATTTGCAGCAATGGTCGATCACAATCGATTC
GGTACTGTGGTACTGGCTGTTGTAGTTTGCTCAGTCGATCAGGAGCAAAG
ATAACATCGTGAAATCTTTGATGTCCGATACCCACTTTGATGTATTCGAT
AAATTTTCTTGTTCTTAAATCCTGAGAATTTGtactgatgttttgatgta
gacTTGAAGTATGCTTCCCTCTACTACTACAATTGTTTGCCGTATTGTAA
CTCGGTCGCCGGCAATGTAGAGCTGCCAATTTGAAACTATCTGCTATGGT
ACCTTTTATAATCACTTTTCCGCGTTTGACGTTGAGCGAGAAGAATGGAT
CTACGTTCCAATAGAAAAATTGGATGATTGGAGCTTGATCGGCTGCCGTA
GGTTTGTTTTGTTTGAGCAATAGAAGTGGTGTAAAGTACAGGGCTGCTAC
AAACTTCATTCTTTAACTTCTGGTTCTGCTTCtttctgaaaatcaaacaa
acctCTGTCGCTCCAATGTAACATGAAAAAAACGATCAAGAACTTCATAA
TCTACTCGAATAACATTTTACTGAAACTTTTCCATCATCAAGCTTTTGTT
TTAGCCCATCCCTATTTCACagttaaattaaaagaaaaaccaTCAGGTGA
CCTTTCAGTTCGAATTACCTTAAGTTTAATCGATTATTTCGGCTTAAAAA
CTCGTAAATAAA Coding sequence (CDS) from alignment at sc0000266:238028..240039 >TCONS_00017393 ID=TCONS_00017393|Name=TCONS_00017393|organism=Clytia hemisphaerica|type=CDS|length=1041bp|location=Sequence derived from alignment at sc0000266:238028..240039 (Clytia hemisphaerica)
ctATACGTCCCTGCATGAATAACCGTTGCACCTAGGTAATCTCTNctttt
taaataatttcctATACGTTCCTGCATGAATAACCGTTGCACCTAGGTAA
TCTCTTGCATACCTCTCAGCTGTAGTGTTTGGCTGGACTGCAATccgttt
ttcgaaaatttctggTGGACTATCCACTGACATATAAACATTGCCACACA
TCACGGCGATTAACAGTAACCCGATCGTAATCCAAACCCACATAATCAGT
TTCCCGATAAACGTTTTCGGGTAAACATCACCATAACCAATAGTCGTCAT
GGTAACAAAACAACACCAAACTGCATCTTGTATACCACTTGCAAAATTTT
CACTTATGTCATCGTTTTGTTGGTGTTCAGAAAACCAGATTAAGGAACCA
AAAATCAATGCGAAAATTACTGAAAGAAATATCGGTTCAGCACAATTTGA
GATGCCGTGTAATATTTTGGTGACAGCTAGAATAGATTTTCGTGGCATTA
AAAGAGCCAACTTTTCACTTGTGGTGTACCTGAATGTCGTTAAATTTTTC
AACTGCAAATCAATCCATTCATCTGATTTATCCATGAAAAGAACTCCCCA
TATTTGCAGCAATGGTCGATCACAATCGATTCGGTACTGTGGTACTGGCT
GTTGTAGTTTGCTCAGTCGATCAGGAGCAAAGATAACATCGTGAAATCTT
TGATGTCCGATACCCACTTTGATGTATTCGATAAATTTTCTTGTTCTTAA
ATCCTGAGAATTTGtactgatgttttgatgtagacTTGAAGTATGCTTCC
CTCTACTACTACAATTGTTTGCCGTATTGTAACTCGGTCGCCGGCAATGT
AGAGCTGCCAATTTGAAACTATCTGCTATGGTACCTTTTATAATCACTTT
TCCGCGTTTGACGTTGAGCGAGAAGAATGGATCTACGTTCCAATAGAAAA
ATTGGATGATTGGAGCTTGATCGGCTGCCGTAGGTTTGTTTTGTTTGAGC
AATAGAAGTGGTGTAAAGTACAGGGCTGCTACAAACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017393-exon-sc0000266-1491911889:238028..240039 | TCONS_00017393-exon-sc0000266-1491911889:238028..240039 | Clytia hemisphaerica | exon |
| TCONS_00017393-exon-sc0000266-1510915933:238028..240039 | TCONS_00017393-exon-sc0000266-1510915933:238028..240039 | Clytia hemisphaerica | exon |
| TCONS_00017393-exon-sc0000266-1575043694:238028..240039 | TCONS_00017393-exon-sc0000266-1575043694:238028..240039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000266 | supercontig | sc0000266:238028..240039 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006813 |
potassium ion transport |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
The following BLAST results are available for this feature:
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