TCONS_00017388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017388
Unique NameTCONS_00017388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017388 ID=TCONS_00017388|Name=TCONS_00017388|organism=Clytia hemisphaerica|type=transcript|length=1203bp
CGACCAAAATCTGGAATGTTCTTCTTCGTTAAATCCAAAGCTGCCAAATA
AATGTATTTCACGGGTAAACCTTTGAACATGGCTAAGTCCTCGGGTAAAA
ACTTATAGTCACTCGAACCAATAGAAAAACGACGAAGAGACTTCATTTTA
GACAATGTCTGCACTACTTTTTCAATCTTATCTTTTCCCGATATTTCAAA
TGCGTGAGTGGACAGGGACGTTATTGGAACATTGGTAAAATAGTCGATTG
TAGTTGGTAAATGCTCATAGTGGAATTCGAAAGATTTGAGGTGACTTAAT
TTGGTGAGCGCTTCAGCAAACTTTTGCAACGACTGGTCATTTTCGACAGA
GGGTATCTTAAGATAGCCGCTATATAGCTTGGTGATCTTGATATCATATC
TAGCCATCAATCCAATATCCCTTGCAGAAAATAAATAACGGTAGTGTTTC
GCTGTTCTTTTATAAACCTTACAATTTTTATTTCTTGAAATacttttgta
aaattgttttgCATTCTTTCGAGTTAATGCAAGACAGTCTAAAGAAATTG
TTATCTTTGGTACTGCATTAATGATCGTTTCCAGTTGAACAGGCGACCAT
CTAATCTGATATGTATCTCGATATTCACAAAAATGATTGATAACAAATTT
TACAACGTTACAAGTTTTCATCACTTGTAAAAGCTCATCAAAATGACTTT
GATTGCTAACTTCTAGCATATGTGTATAGATTACCATGGGCATTTTAAAT
TGACTGAAGTATTTGGTATTGAATCCTAACACCGTGCTCGATTCTAATCG
GTCAAAATGTAACAGTTTGAGAAGTGGGAAAGCTTTATGAACTTTTTTAC
ATGACCATTTCGGGAAATAATATATACTTATTTCACGTATGGGTAGATGC
GAAAGTTTCTTGAAAAAACCAACAGTTCGGATCTCTTCACTGATCCCTAT
TTTATCACCAAAGAgatgatattttggtttaattttGTACCAAATCCTGT
CCAAAGTCAAATCGTACATTTTTTTTGAAGTGAGGGAGACCTTTTTGGCA
TCCTCCTTAGACAGGAATGATACAATAAGTTTCAATATCTCATTTGGTAA
TACGTCAAAACTCATTATGGAATTGTCTTATTTGACAAtattgttttaaa
ataaaatattattctCTTACCGATCATTACAAAAAATCGTACACCAAATC
TCC
Run BLAST on NCBI

transcript from alignment at sc0000266:337489..345057-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017388 ID=TCONS_00017388|Name=TCONS_00017388|organism=Clytia hemisphaerica|type=transcript|length=7569bp|location=Sequence derived from alignment at sc0000266:337489..345057- (Clytia hemisphaerica)
CGACCAAAATCTGGAATGTTCTTCTTCGTTAAATCCAAAGCTGCCAAATA
AATGTATTTCACGGGTAAACCTTTGAACATGGCTAAATCCTCGGGTAAAA
ACCTATATAGCTTGGTGATCTTGATATCATATCTAGCCATCAATTCAATA
TCCCTTGCATAAAATAAATAACGGTAGTGTTTCGCTGTTCTTTTATAAAC
CTTACAATTTTTATTTCTTGAAATAATTTTCGAAAATTGTTTTGCATTCT
TTCGAGTTAATGCAAGACAGTCTAAAGAAATTGTTATCTTTGGTACTTAT
TCATTGATGATCGTTTCCAGTTGATCAGGCGACCATCTAATCTGATATGT
ATCTCGATAATCCAAAAAATGATTGATAACAAGTTTTACAACGTTACAAG
TTTTCATCACTTGTAAAAGCTCATAAAAATGACTTTGATTGCTAACTTCT
AGCATATGGGTGTAGATTACCATGGGCATTTTAAATGTAATAAAGTATTT
GGTATTGAATCCTAACACCGTGTTTGATTCTAATTGGTCAAAATGTAACA
GTTTGAGAAGTGGGAAAGCTTTATAAACTTTTTTACGAGACCATTTCGGG
TAATAATATATACTTATTTCACGTATGGGTAGATGCGAAAGTTTCTTGAA
AAATCCAACAGTTCGGATTTCTTCACTTATTCCTTTTTTATCTCCACAAA
AATGTTATTTTGGTTAAATTTTGTACCAAATCCTATCCAAAGTCAAATCG
TACATCCTTTTTGAAGTGAGGGAGACCTTTTTCGCATCCCCCTTAGAGAG
GAATGATACGATAAGTTTCATTATTATATACCTGTAGGCAAAAACAGCCA
TTGAATAATTCCTGATATACCATGGCTATTATACCACGGTAGAATTTTTT
TTTCAACTTTTGCTTTCAAAGTTTGATTTTTTTTATCGCTCTTGTTGCAT
CAAAGAAATTCATTAAAATAAATCGATCGTCAATTTCATGAACAAATTTT
ATGATTCAAAGTAATTAAGAAAATCATTAAAAAAGAAAAACATTCGAACG
TTCGATTATGGGAGTGTTTTAAGTGAAACGCTCAACTATTAACATAATTA
ATGTTTTGTTTTTGCCTTAGGTATATAATAAAACATATATATTCAATAGG
TTTTCGTTGGTTATTGGATTTATTAACCCTCGGTGATGTATATTCAACTC
GGCTTCGCCTCGTTGAATATTACATCACCTCAGGTTAATAAATCTCAATA
ACCAACTTTTTTTACCTATTGAATATCTGCTTAATATTTCATTTGGTAAT
ACTTCAAAACTCGTTAGCATCAATCAAACCATCAATCAAACCATCAATCA
ACCATCAAGCTTCTTCTATTGACATCGTTTTGTATGGCAACAAACAAACA
GCAAGGAATTGTTCTCTTTATTCTATTTTTTTGTATTTTTTCTAAACGAG
AAATTATCAGTGATTAGTTATGATGCCAAAGTATTTAAGTGATTAGCTAT
GATGCCAAGAATAATCAAAAAAGTATTTATATGTTGCAACAACATCAAGT
AACTTTCCAAAATATTCTAGATTCAATCGAGTCACCAAGTTTTCTCAAAC
GAGGACGATTACAAATAGAGAATCCAATATATAATGTTATGAATATATGA
TTTCAGAAATATAAGAACGTGCGACGAAATAATTAAAACCAATTTATTTC
ATTCATATAATATTTACAAAAGGCCTCTACTGATCTTTAAAAATCGAAAT
TCAAATTTAAAAAAACAAGAAGCCCAAGGGCATGAAGGCCCAGCATTAAA
AGTTTTGTTTCTAAATAAGAGTGATAAAGTTTGCTTACTCATCAATTTTA
NNAATATTAGCACGATATAACAAACTGATATGAAACATGTGTCTGACATG
AAACGGGAAAACTTATCTATGTAAAAATAAAACTTTTGAGAAATCTTTAA
CAAACATGATTGTGCTAAAGCTCTAACTAAAGGGAGCAAAAACAAATGAT
AAAAAGTAAAATTAAAAAGAAACCAGCATCGAAAAAATTTTCCTGCAACC
ACAGCGGCTGCAGCCTCAGCAGCACTCAAAAATGCAAAATTTTTATATAA
AAATGTCCATAAAAACTGAACAATTTTGAGTTATTGGCTGAAATTTTGTA
CAGTGACTCACTTTCAGATGCAGATCATAATTCAGTAAGTGTTTTTCCCA
AAATGAGGCTATTTCAAGATGGTGTCTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAACTTCGCCTCACAAAAATGCGGGAGAGCTCC
AAGTCGGAAAAATTTTCCCCGATAATCCGATTTTTCAAAATCGGAAAATC
GGGAAATCGGGGAAATTTTCTAGTAAAATCCGATTTTATTGGAAATTTTT
TTCGGGAAATTGGGGAATTTTTCGTTCCGATCTTTCAAAATCCAGAAATT
TCGCCGTTTGGATTTTCCAAAATCAGAAAAATTTTGGAAATGCGGGAGAT
GCGGGAGAAAATCCCAAAAATGCGGGAGATTTGGCAGAATTTTCTTCACG
CGGGAGAAATCGTTGACATGCGGGAGTCTCCCACTCAATGCGGGAGAGTT
GACAGCTATGCTTTTATGTCCCTTTAAGTGGAACTTAATCGAATACTCAC
AATTTCAGTGCAGCAACCTTTGAACATTTTGATTAATTATGTCGTCTGGT
ATGTACTGAAACTAAAATAACTGAGCATGATCGAGACTCCTAGAAAAAAA
GCTTGTTTCAAATATAAAATTTCACCATGTAATTTTATGCAGAAAAAGTA
TCAAAATGTCCAACAATAGTACAAATAGAGGCTAGTCTAGTCAACATCTT
GCTGTTTGAATAAATTTTCTTGTCGAATATAAAAGCCTGAACACACATTT
TTTCATCGCACACGTTAAAAGTTATAATTATTCTGATAAAATGTCTGATT
CCTCTTAATCATCAAGGAGATAGCAAGAGAATAATAAACATTACATAAGA
GAACATACCTGTAATAATCTGGTTGGTGTTTGAACCTACATTTTGAACAG
TAATGAGAAAACATCGATGAAAACCCTCAAGCAAAATCAGTGTAAAAAAT
GCAACTTTCAAAATAGTCTTTTAAAGCTTTTAGGTCAATAAGTATGAGCA
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGACTGCGGACAGACAG
GACAGGACAGACACACGGAAAGTTCCTCTTGAAAGGCCCCTTCGCTAGCG
CTGGGCCAATAATAAAAATACGTTCGGAAATAGAAGAAGTGAATAAATCC
GTAGAAAATAGTGGTGCGTAGATTAGTGTAGCGTAAAATTTTCAGAAAAG
ACTTTTTGATTTTGTCATAGTGAAGTGACATGATCTACCTCACTGCCTCC
TCCCCCTAGCGGTTTGCGTGAATACGTGAATGAGGCTCTCCGCCAGTTGC
GTGAATGCGTGAAAATAGAAAACAATGCGTGAATGCGTAAATTGAAAAAC
CTTGCGTGAACGTGAAAATCAAAAATATTACTATTCAATAGAGTTGAGAA
TAAATCAGCTGAATTCTCTCTTTTGTCTTTGTTGTTTCCGAAATAGACAA
TTATTTGAGTAAATAATCCATCATAAGACGAACTTTGTTTTGAAATTTAA
ATGGTTATAACTCTGAATCAAAAGAAGATTTTAAGATCGCGATTTTACCA
AAATGAAATCCAGTAACTTTTCTTCCACTTTGACTGAAAATTTTTTTTTT
GACAAAAAATCGGAAAAAGGTGAACACATACCTTAATGGGGTAAACTTTC
GCGGGGATTGAATTTCGCGGATTCCGCGGATTTGGGTGTTTGGAAGGGCC
TCATCCGCGAAATATATCTAAACAATACTCAAAATATGTCAAATAAATAC
TATTTCAATGGTTACTTGCATCAAAGAAGCGCAAATAATGTGTATTTCAA
CAACCAATATGCATGATTTGAAAGTAGAAGTCACAAAATCGTGAAAATAT
TGCCTACCCAATAGTGCCACACGCGAAATTAAGTCCCCGCGAAATTTTTG
AATCCCCACGAACGTTTATCCCCATTAAAGTATAAGTCTCAAGAGAGTTA
TTTGGCGGTAAAATATCGATAACTCGATCAGCGATATATTCTGTTTAAGC
CAAAGCTGACCTGATATTTTCAAGAACATTGGATTGGAAATATATACTAT
ATACTCAAACCAGGGATATTTAATAGCGAAGCTGGATACCGCACATTTGA
TAAAGCCTTGTTCTATCTCTGTACCTAGACATTAAAATTTGATATGAAAT
TTAACTTTTTTAATTACAAACTTGTGAAATTTGGATTTCCTCTTGGCCAA
CGATTCTGCTGTTGTATTTATCCTTCACGATTAAAAACTTTTAATTATCA
AGAGGGTCTGTAAAACATTGGTGAATGACAATTAAAAAAAAAAGAAAAAC
ATTGTTTATTCTTGTATCTAGGTCCACCAAGGAGACCAAGGAGATCAAAT
TTTGAAGAGCCCCGTCCCTGTTTAACATTTTATTGAAAGATGGAGAACCT
TCCCAAAAAAGGGGCACAACGAGATTAAATGGAGTAAAATTTCCAACCTT
TACATAAAATCGTAATGAAAAATGAGTTCGCTTCTTTTATCAATTCCACC
TTTCAACGACTAACCTTAAGTCATAATAGGAGAACACCAGTATGAGTTTT
AAGCTCATAAATGAAAGGCAAACTGTACTATATGGTTTGGTAGATACCAC
CAAGCCCGTGTGTTTTCATTTCAATGCCAAGTTCTTCCATCTTACTATGA
CGTCTGCTACCATCAGAAAAATAAGGGGAAAGCCCAATGTGTTCTACATT
CATTTCCATGATAATTCGACGAAAATCTGGAATGTTCTTCTTCGTTAAAT
CCAAAGCTGCCAAATAAATGTATTTCACGGGTAAACCTTTAAACATGGCT
AAGTCCTCGGGTAAAAACTTATAGTCACTCGAACCAATAGAAAAACGACG
AAGAGACTTCATTTTAGACAATGTCTGCACTACTTTTTCAATCTTATCTT
TTCCCGATATTTCAAATGCGTGAGTGGACAGGGACGTTATTGGAACATTG
GTAAAATAGTCGATTGTAGTTGGTAAATGCTCATAGTGGAATTCGAAAGA
TTTGAGGTGACTTAATTTGGTGAGCGCTTCAGCAAACTTTTGCAACGACT
GGTCATTTTCGACAGAGGGTATCTTAAGATAGCCGCTATATAGCTTGGTG
ATCTTGATATCATATCTAGCCATCAATCCAATATCCCTTGCAGAAAATAA
ATAACGGTAGTGTTTCGCTGTTCTTTTATAAACCTTACAATTTTTATTTC
TTGAAATACTTTTGTAAAATTGTTTTGCATTCTTTCGAGTTAATGCAAGA
CAGTCTAAAGAAATTGTTATCTTTGGTACTGCATTAATGATCGTTTCCAG
TTGAACAGGCGACCATCTAATCTGATATGTATCTCGATATTCACAAAAAT
GATTGATAACAAATTTTACAACGTTACAAGTTTTCATCACTTGTAAAAGC
TCATCAAAATGACTTTGATTGCTAACTTCTAGCATATGTGTATAGATTAC
CATGGGCATTTTAAATTGACTGAAGTATTTGGTATTGAATCCTAACACCG
TGCTCGATTCTAATCGGTCAAAATGTAACAGTTTGAGAAGTGGGAAAGCT
TTATGAACTTTTTTACATGACCATTTCGGGAAATAATATATACTTATTTC
ACGTATGGGTAGATGCGAAAGTTTCTTGAAAAAACCAACAGTTCGGATCT
CTTCACTGATCCCTATTTTATCACCAAAGAGATGATATTTTGGTTTAATT
TTGTACCAAATCCTGTCCAAAGTCAAATCGTACATTTTTTTTGAAGTGAG
GGAGACCTTTTTGGCATCCTCCTTAGACAGGAATGATACAATAAGTTTCA
ATATCTCATTTGGTAATACGTCAAAACTCATTATGGAATTGTCTTATTTG
ACAATATTGTTTTAAAATAAAATATTATTCTCTTACCGATCATTACAAAA
AATCGTACACCAAATCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009735XLOC_009735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017388-exon-sc0000266-1575043694:344980..345057TCONS_00017388-exon-sc0000266-1575043694:344980..345057Clytia hemisphaericaexon
TCONS_00017388-exon-sc0000266-1575043694:337489..338613TCONS_00017388-exon-sc0000266-1575043694:337489..338613Clytia hemisphaericaexon
TCONS_00017388-exon-sc0000266-1510915933:344980..345057TCONS_00017388-exon-sc0000266-1510915933:344980..345057Clytia hemisphaericaexon
TCONS_00017388-exon-sc0000266-1510915933:337489..338613TCONS_00017388-exon-sc0000266-1510915933:337489..338613Clytia hemisphaericaexon
TCONS_00017388-exon-sc0000266-1491911889:344980..345057TCONS_00017388-exon-sc0000266-1491911889:344980..345057Clytia hemisphaericaexon
TCONS_00017388-exon-sc0000266-1491911889:337489..338613TCONS_00017388-exon-sc0000266-1491911889:337489..338613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:337489..345057 -
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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