TCONS_00017377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017377
Unique NameTCONS_00017377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017377 ID=TCONS_00017377|Name=TCONS_00017377|organism=Clytia hemisphaerica|type=transcript|length=1297bp
TGATGAGAAAAGTGTTGCTCATTTGGTGGACTTTGCTTATAGTGGGCATA
TCAGTATAAATATAAACAATGTTGAATCATTATTGATATCAGCCAATATT
TTACgtgtttcaaaagttataaaagCATGCTCAGATTTTCTATATTCAAT
CTCTGGTGGCTTTACTTACACGATCTATGAAAATGAGAAGTGACATTACA
AACTTAAAATTACAATATATGCTCAATATGAAGCGTAACCCACAAAGGCT
AGCTGATAAAAATTATCAGAATGGTTATAGACAGAGAAGAGAAAATGACA
ATGTCATTGTCATGGGTGGAAAAGATAGTTATCTAAGCCCTTCATCGACT
GTTAGCAAATTCGACATCAAATCAAACACTTGGAAACCTTGTAAACTCCT
CAATCATGCAAGATCTTCTGCAAGTGCTGCATATCTACAAGatcACATAT
ATTTGACTGGTGGTATTTGCGAAAACCAAGATGGAAGAGGCTCAACACAT
ACACGATCAGTGTCTTGCTTTACAAACAAATCAGATAAATGGTTCAATAT
TTCTCCTATGAGCCAACAACGAAGCAGTCATGTCACTATTACTCATGGGA
ATAAAGTTTATGCGATTGGGGGCTACGATGGTCAAATGTCTTTAAAGTCT
GCAGAATGCTATGACCCTTACACTGACACATGGACCGAAATCGAGAGTAT
GAACTACCACCGGAGCTCGTTCGCTGCCGTCACCATGGATCAATACATTT
ACGTGTTAGGAGGACATAACACGTGTACCGTCGAACGATATGATACGTGC
AATGCATGTTGGGAATTGATGCCTGCCATGAGCACCAAGCGATTGAATTT
CGGAGCAGCCCAAGTCTGTGGTTTTATTTATGTCGTTGGTGGTCATGATG
GTCGTGAATATCTTCGAAGCATGGAACGATTCGACCCAGTCTCTAGCGAA
TGGTCGGTTGTTTGTCCTATGCCGAGCGTGCGCAGCGGTATCGGAGTCAC
GGCTGCTCAACATGAAATTTTCGTCTTCGGTGGACATAATGGATCACGTT
ATTTGAGCAGCGCGTACAAATATGATGTTTTTCAAGATAAGTGGACTTCT
ATACCTGATATGACTACTGCTAGATGCGACATGGCTGTTATTTCGATGGA
CTCGCCAGAAAATTGAACGACACACTGTATATGGTTGTTGCCTGATAAGA
ATTTGGCTTTGGGCCTTACTGTTATTGAGACTGGAACCAAGCCACGTGAT
AATGAGCATAATGTTTATAAATATGAAGGCTCTGAGTGTCTTAGTGT
Run BLAST on NCBI

protein sequence of TCONS_00017377-protein

>TCONS_00017377-protein ID=TCONS_00017377-protein|Name=TCONS_00017377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MKMRSDITNLKLQYMLNMKRNPQRLADKNYQNGYRQRRENDNVIVMGGKD
SYLSPSSTVSKFDIKSNTWKPCKLLNHARSSASAAYLQDHIYLTGGICEN
QDGRGSTHTRSVSCFTNKSDKWFNISPMSQQRSSHVTITHGNKVYAIGGY
DGQMSLKSAECYDPYTDTWTEIESMNYHRSSFAAVTMDQYIYVLGGHNTC
TVERYDTCNACWELMPAMSTKRLNFGAAQVCGFIYVVGGHDGREYLRSME
RFDPVSSEWSVVCPMPSVRSGIGVTAAQHEIFVFGGHNGSRYLSSAYKYD
VFQDKWTSIPDMTTARCDMAVISMDSPEN
Run BLAST on NCBI

transcript from alignment at sc0000266:93839..100948-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017377 ID=TCONS_00017377|Name=TCONS_00017377|organism=Clytia hemisphaerica|type=transcript|length=7110bp|location=Sequence derived from alignment at sc0000266:93839..100948- (Clytia hemisphaerica)
TGATGAGAAAAGTGTTGCTCATTTGGTGGACTTTGCTTATAGTGGGCATA
TCAGTATAAATATAAACAATGTTGAATCATTATTGATATCAGCCAATATT
TTACGTGTTTCAAAAGTTATAAAAGCATGCTCAGATTTTCTAGTAAGAAA
TCTTCACCCCTCAAATTGTTTAGGATTTTTAGAATTTTCAGAGAGACTAT
CACTGTATGAATTACAAAAGCTATGTATGAACTTTTCAGCTGAACATTTT
ACTGAGCTTGTAAACTATGAGGAGTTTTCATATGCTAGCATTCAAACAAT
AAAAGACATTATTGTACACAAACATCTGAATATTACTTTTGAAGAGGACA
TTTTGGATTTTATTGAAAAATGGGTTTCATTCGACAAAAAGAATAGAATG
ATTTACTTTGATGAGCTTTTTGATGAAGTTAATCTATCCATGCTTAGTAT
TCAATCTCTGGTGGCTTTACTTACACGATCTATGAAAATGAGAAGTGACA
TTACAAACTTAAAATTACAATATATGCTCAATATGAAGCGTAACCCACAA
AGGCTAGCTGATAAAAATTATCAGAATGGTTATAGACAGAGAAGAGAAAA
TGACAATGTCATTGTCATGGGTGGAAAAGATAGTTATCTAAGCCCTTCAT
CGACTGTTAGCAAATTCGACATCAAATCAAACACTTGGAAACCTTGTAAA
CTCCTCAATCATGCAAGATCTTCTGCAAGTGCTGCATATCTACAAGGTAC
TTTTTATCATAATTTTTTCTGGAGGGATATTTTGCCCTTCCAAATGATTT
ATTTGTATGAAAAATCATTGTTTGTTCTTTAACTGTCTTTACTTCACACC
TGATAGGGATGCTACAGTAGAACAGTTTTCTGATCATATGATCTTGGTTT
AATATAAAATAGACTTCATGTTTAAAAAAAGGTAAACAAACTAACCAGAA
TGATTTAAAAGAAAGAAAGCAACAGTATTATAGATCATTGTTTTCAAAAC
TAAAAAAAAATTACTTCTAAAATAATTACTACTGTAACATTAGTTAAGGA
ATCAAGAAAACTAAATTTTGATATTGAATAGCTCAATAGCAAAAATAATG
TTACAAAAAACATACCTCATAACATACCATAACATAATCATTTTTTAGAT
CACATATATTTGACTGGTGGTATTTGCGAAAACCAAGATGGAAGAGGCTC
AACACATACACGATCAGTGTCTTGCTTTACAAACAAATCAGATAAATGGT
TCAATATTTCTCCTATGAGCCAACAACGAAGCAGTCATGTCACTATTACT
CATGGTAAGGCTCTTTGTTGAAATAGGGTCAAAAATCTTTGCGAATGATC
TTTATTTGCAGACTACAATAAAAAGGAGGAAACTGTGTATTGTATTTAAA
GTTCCTTTTGTTGAACCATGTTATTTTCTGGGTGACCTGATGCACTGACA
ATTTTTGTAACCTGGCTTTTATACTGCCAGACACTTTAAACTATTCTTTT
TATGATATAGAAAAGAGGCGAACCTCTTATGCTGAAAAAAGCTGGAATTT
TTGTGCTCGCAATGCACAGGAGGGGGAGATATGTTAAGTGATGTCTTTTA
ATCTCTTATTTTTTTTTCCAACTCACCACTTTTAGTGCACCACTAAAACT
ATCAATCATACTTTTCTGATCTTAAATGAAAAGTGACAAAGTAAAACTTA
TGGGTACAATGTCTGCTGCAATTTTCAAGCAGGACAGCATAAAAAAGACT
TAGTACAACTTTTTGAATTTTTATATTGTTAGAGGCACAAGTCATAAGGA
AGTTTAACACAAATGACTATTAATGATCTCCAACAGCGTGGTATATGCAG
CACTTCTACTGAAATAATTACCTTACTACATAAATATTACTAGGCAAGTA
TTTAACGGCCTTGAAATTAACACTAATTTTTCTGCTTTTTTAAGGAAACA
TCGGCTGGTTTCAAGTAAGGGGGTTTTATGACCATGAAGTTTTTCAATTC
GCGTTAATAAAATGACTAGTAATATTCGTGTTATAAGGTAATATAGTAGT
AGCTTAGAAAAAAGGCATGCTTATTCGTGTTGACCAAAATCTGTTTTGAT
TGAAAACATACTTAGAATATGATCGCTAATAAATGAATGCAACTTAAATA
TTGTTCTTTGTTAAGATAGCTGTTAATAAAGTTGTTAAAGTACCCTATTT
ATTGACCGTAATCGCTAGCTTTGAACTTCCGAAAATAGTTGACATGCATT
AGTGACAAGATGCAAGCTTTCAAACTTTATCCCCTTCGGTTATATTACAA
TAATAGCATGCACGTCAGAGTATCTATTTATAGATGACCAAGCTTCTCCT
TTTTAATTTATACCGTCTGTCTGTCTGAAGACAGAATTTCGAAAGAAAAA
TATGATTTTTTCTTTTCGTTTTCATGAAAATTTAATACCATTTTTTTTTG
GATTTATTTCCCCTATCTTGCTTCTTGTTTTTTTTGCGCACGATTTTACA
ATGTTTAACTTTGTATTCTCTTACAAGTTGTTATCCAGGTCTATCCTCTC
TGCTACTAATCTTTCATCACGCGATGGTCTTGTAGGATTTATTAGATGCA
ATTTTCATGATATTCCGGAAACCAGGGGACAAAAATCCGTTTGCTGAATT
CATTTGTTTCTGAATTTTATGAAAGTGATGGCTCCGTCAACGGGTTTAGC
GGTTTTCCGCGCTTGTATTTTGATTGATTTTTCGAGAAAGCAATTATTTT
ATACGTAATGACTTTCTGGAATTATCCACATCACTTAAAAAGACAAAGGA
TATTTCAGAGATAATAAGAGAAATATTATATATAATATTGTATAACTTCA
TAACGTTACGAAAAGGGGCGTGTTTAGGTACTGTCTACCTTTCACCAAAT
GTATAGCATTTTCATAAAGCCCATAAACGCTAATTTGAAATTGTTTCTTC
TAAAATCTAGTGTAAAATTCAACTTGGTGTTCAAAACAAAATCCTGAACA
CATAAAGAACAAATATGAAAGCGGTTCATTCTAAACATAGATCTTTAATT
TCTTCTTATTGGTTTTAAATTACGAAACAAACATAGTATTTTAATCGACA
TCGGTTATGAATACCATAAAAAGTTACAAGAATTAGTTTCTTAATTGACT
TCGTGGCTTTTTTAATTAATGAAGAAGGTATTTTTGATGCTGGTCCTATA
TTCGAATACTTATAAGCCATATTTTGATTTAATATACTTACTTCCATCCC
AATCATAGACAAAAGAAGACCTTTCTTTTGACCACTTAGCCTTACATAAC
AATACTCTCGTTAGACGACTTAACATTTTACACCCATTCAGTACCTTACT
GATTCTTAATAAAATTTACTGGAAGTCTTTTGTCAACGTTGGCGTTAATC
ATAATACAGCTTGTTTATGTGTTTTTAGCTTTTCTGTACATCTCTAGTAT
TTTAATGCTCTCTCTGCCCTTTGGTTTTTTCTACTTAATCGGTGGGGTAT
TTTATACGGATGTACCTCCATTGAGGGACGTTTTTGATTCTTGATATATG
ATATAGAAACACAGAGGTCAAAAACCGGCTTTTATGGGTGCTTCCGTTAA
AAAATATGACGTCATCTTGACTTACGCATATCAAGAATACCAGGGAAAGT
TGTAATTGCAGAACTCGGATTACCTTTCACAGAAATTGATCTTACAAGTT
TAGCTGGAAACAAACTTTAGAGTTTTGTAAAATAAATTCGACAGTTAATT
CCAAATCTTGGAATTAACTGACGCAAAATGATATGCGTTTTCCCATTCAT
TAAGAATCAGAGAGCCCTGTTTAGAGCTGTTGGTAAAAACGCCCTTCTAC
GTTCACAGAAAAGTTCCCAACTGTCAAAAGTATGAGATTTTTAACCGAGT
TTCAGTTGATTTCTTTCTTTTTCTTGGCCGTTTCGCCTCACTTGTCTCCA
TCGGGGCTTAAAAAATCTTCAGGGTATTAGGGTGTTTTGATGATGTCCCT
TTTCTCCAGTGCCTAATATACGTCTCGATTATCAATTTTCGAAAATGTCT
TCAACTGTCTACAGAAAGAAGTCTCTAGTTTCTTTCTTTCTGCGTTGCTA
AGTGTAAAAGTCAAGGAATATCTTTCGTTATTATTATTTCACTTCATTTT
CATAGGGAATAAAGTTTATGCGATTGGGGGCTACGATGGTCAAATGTCTT
TAAAGGTAGGTGAAAATATCAATATTTTTAGACCTTTACTCAGAACGGAT
CATAGTTTGACGTCATTCAATACAGAAAATCAGAACCTCATTTAAACTTG
ATAAGCGATATTTTTGTAGTAAAGATGGAGATTGGTTTATATTTTGAAAA
CCACAAATTTGTCTCCTTGGGAAATACACGTTTTTTTTAAAGAAACTAGT
TTTACCAAGCAGCCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTA
AATGTTTCTTACATGTTTCTAAACNNNNNNNNNNNNNNNNNTTCTTAAAA
GTGTGTTTCTTAAAAAAAAAAACGTGTATTCTGAAGATCTTACATTGAAG
ACCTGACATTTGATGAATTGAAAATCTACCCTAGTTATGGGGAAATGCAA
ATCAATGGCGCTATTTTTCAACAATGTCTCTTTGTTTTAATAAGAGAAAG
CCGTGAGGGAAAGGCGAAAATACCCGTTCAAAAATCTTTCCCGCGGAAAA
GACACATGAAGTGCTGTTTGTTACGCCGGGGGGGGGGGGCTCTATTCAAA
AACGACCATACGTGCGGCCCAGAATTAGGCCTTTGAAATCGGACCCTTAC
AGAGAAACTTTTGCAAAATTTGAGCGAAAAAACGACCCTTGCGGTGCATT
TTCTTGAAAAATTTTAACCATTTTAAGACAAAATATGTTCAGATTTTCGA
AATACACCCTTAGAATGCAATTTTTCTCATCTTTGCTGATTTCGACCCCT
TACAGTGTACTTTGAGAAGCTTGGAAAGTATACCCTTAAGGGCCGCACGT
ATGGTAGGTCATTTACCTTGAGTGCTCCCCCCCCGGGTTATTACGGTCAT
GCATTATACCAAATTTGGCGAGTGAGGATAAAATGAAAAAAGAAAGTTTT
TATGGAAATGTAAATTACATTGTTTTAAAAAGAGGATATTTTAATTTTTA
TTATTCCCCAAGGGTTTTCAAATTCCTTAAAGAGATTCGAATATTCCTCT
TCTGCTTTCTAATAATAGTTTTGGATGACGGCGCTGTCCAGTCGCTTAAA
AAAGTTGAAATAGAGATGAGGGCTCAGCGAGGATGAAATTTTGGACTATT
TTGCTTGATACGACAAGTTTTGGAACGTGTTCTTCAAGTGGTTAAATTCC
CATCAGGTCTCTGCCACGAAAGCTAAAAGAGTCTCATTGAAATAACTCCT
TTTTACAATTCTTTTAAATAATGGATTGTCAATCGAAATTTGCTTCATCG
TTAGAATAAGCTCTCACCCGATTTAATTAAAATGACCCCTGTGATATTTT
CAAACGCTTATTTACCCCTTTCATTCACTAAAGTAAGATTTCACCAAGGT
CTGCCAAAGTTAAAAAATCATATCATTCGCCATCTAAAAAACTCGTCAAA
ATTAAGAAAAAATTTTTTTCTAAAGTATCTTCGTAAGCAAAAGTGACGTC
ATAGGTTTTTACTATTGAATATTTGATGATTCGTGGACGAAAACTTTCGC
CTCCTATGAACGTTTATACCAGAATTCACCTTTTGTTTCTCTTAGTCTGC
AGAATGCTATGACCCTTACACTGACACATGGACCGAAATCGAGAGTATGA
ACTACCACCGGAGCTCGTTCGCTGCCGTCACCATGGATCAATACATTTAC
GTGTTAGGAGGACATAACACGTGTACCGTCGAACGATATGATACGTGCAA
TGCATGTTGGGAATTGATGCCTGCCATGAGCACCAAGCGATTGAATTTCG
GAGCAGCCCAAGTCTGTGGTTTTATTTATGTCGTTGGTAGGTATTTTACC
TTAATTAAGTAAAATATTTCTCGCGGTAGCTAAATTTAACGGGTTTTTAG
GAATTCTTTGGTTATGTATGTCGTCCCTGCATCATGTTTTAGAATACTTG
TGGAACTCTTTTTTCAGTATCATGCTGCTAAGAGAACAAACACTTTACTA
AGTAACAGAAATGAAACCATCTGCAAATAGACGATATCGGCTTTCCGAAT
TCTCCCCGAATGATTACCCATGATGCATTGGTATCGTCATCAATATCGTC
CGTGAATTTTTTTGCACAATGCATCATGGGTAATCATTCGGGGAGAATTC
GGTAAAGCCGATATCGTCTATTGGTATTTTGTGATTCAATTTGTTATCTA
GCTTATCTTACGTCAGTGGAAGTCAGTACGGTCTGAGGAGGTTACGATGA
AAAAGTTCTTTCCATTGATGAAATATTTCTGTTTTCTTTCGATGAACAGG
TGGTCATGATGGTCGTGAATATCTTCGAAGCATGGAACGATTCGACCCAG
TCTCTAGCGAATGGTCGGTTGTTTGTCCTATGCCGAGCGTGCGCAGCGGT
ATCGGAGTCACGGCTGCTCAACATGAAATTTTCGTCTTCGGTGGACATAA
TGGATCACGTTATTTGAGCAGCGCGTACAAATATGATGTTTTTCAAGATA
AGTGGACTTCTATACCTGATATGACTACTGCTAGATGCGACATGGCTGTT
ATTTCGATGGACTCGCCAGAAAATTGAACGTATGTTAATTGGACAATGTT
TTGGTGTACAGTGTGTTCCAAAAAAGAGGACAAATCCTCAAAACACATTA
TCTAAACTGGGTTTAGATTAATTGAACTAAGATTACAATTCTCTGTTCAA
TCAATAGATATTCAATTCACAAGATGATTGTAATAGGTTTTTGAGATTGA
AATATTTAGGTACACAAGTCATAAAATTTGGCAAAAATTATGAGGATTTT
ACTTTATATGAAAATGTGTCCGCTTTTTAAGGACACACTGTATATGGTTG
TTGCCTGATAAGAATTTGGCTTTGGGCCTTACTGTTATTGAGACTGGAAC
CAAGCCACGTGATAATGAGCATAATGTTTATAAATATGAAGGCTCTGAGT
GTCTTAGTGT

Coding sequence (CDS) from alignment at sc0000266:93839..100948-

>TCONS_00017377 ID=TCONS_00017377|Name=TCONS_00017377|organism=Clytia hemisphaerica|type=CDS|length=4950bp|location=Sequence derived from alignment at sc0000266:93839..100948- (Clytia hemisphaerica)
GTGGTCATGATGGTCGTGAATATCTTCGAAGCATGGAACGATTCGACCCA
GTCTCTAGCGAATGGTCGGTTGTTTGTCCTATGCCGAGCGTGCGCAGCGG
TATCGGAGTCACGGCTGCTCAACATGAAATTTTCGTCTTCGGTGGACATA
ATGGATCACGTTATTTGAGCAGCGCGTACAAATATGATGTTTTTCAAGAT
AAGTGGACTTCTATACCTGATATGACTACTGCTAGATGCGACATGGCTGT
TATTTCGATGGACTCGCCAGAAAATTGATCTGCAGAATGCTATGACCCTT
ACACTGACACATGGACCGAAATCGAGAGTATGAACTACCACCGGAGCTCG
TTCGCTGCCGTCACCATGGATCAATACATTTACGTGTTAGGAGGACATAA
CACGTGTACCGTCGAACGATATGATACGTGCAATGCATGTTGGGAATTGA
TGCCTGCCATGAGCACCAAGCGATTGAATTTCGGAGCAGCCCAAGTCTGT
GGTTTTATTTATGTCGTTGGGAATAAAGTTTATGCGATTGGGGGCTACGA
TGGTCAAATGTCTTTAAAGATCACATATATTTGACTGGTGGTATTTGCGA
AAACCAAGATGGAAGAGGCTCAACACATACACGATCAGTGTCTTGCTTTA
CAAACAAATCAGATAAATGGTTCAATATTTCTCCTATGAGCCAACAACGA
AGCAGTCATGTCACTATTACTCATGATGAAAATGAGAAGTGACATTACAA
ACTTAAAATTACAATATATGCTCAATATGAAGCGTAACCCACAAAGGCTA
GCTGATAAAAATTATCAGAATGGTTATAGACAGAGAAGAGAAAATGACAA
TGTCATTGTCATGGGTGGAAAAGATAGTTATCTAAGCCCTTCATCGACTG
TTAGCAAATTCGACATCAAATCAAACACTTGGAAACCTTGTAAACTCCTC
AATCATGCAAGATCTTCTGCAAGTGCTGCATATCTACAAGGTGGTCATGA
TGGTCGTGAATATCTTCGAAGCATGGAACGATTCGACCCAGTCTCTAGCG
AATGGTCGGTTGTTTGTCCTATGCCGAGCGTGCGCAGCGGTATCGGAGTC
ACGGCTGCTCAACATGAAATTTTCGTCTTCGGTGGACATAATGGATCACG
TTATTTGAGCAGCGCGTACAAATATGATGTTTTTCAAGATAAGTGGACTT
CTATACCTGATATGACTACTGCTAGATGCGACATGGCTGTTATTTCGATG
GACTCGCCAGAAAATTGATCTGCAGAATGCTATGACCCTTACACTGACAC
ATGGACCGAAATCGAGAGTATGAACTACCACCGGAGCTCGTTCGCTGCCG
TCACCATGGATCAATACATTTACGTGTTAGGAGGACATAACACGTGTACC
GTCGAACGATATGATACGTGCAATGCATGTTGGGAATTGATGCCTGCCAT
GAGCACCAAGCGATTGAATTTCGGAGCAGCCCAAGTCTGTGGTTTTATTT
ATGTCGTTGGGAATAAAGTTTATGCGATTGGGGGCTACGATGGTCAAATG
TCTTTAAAGATCACATATATTTGACTGGTGGTATTTGCGAAAACCAAGAT
GGAAGAGGCTCAACACATACACGATCAGTGTCTTGCTTTACAAACAAATC
AGATAAATGGTTCAATATTTCTCCTATGAGCCAACAACGAAGCAGTCATG
TCACTATTACTCATGATGAAAATGAGAAGTGACATTACAAACTTAAAATT
ACAATATATGCTCAATATGAAGCGTAACCCACAAAGGCTAGCTGATAAAA
ATTATCAGAATGGTTATAGACAGAGAAGAGAAAATGACAATGTCATTGTC
ATGGGTGGAAAAGATAGTTATCTAAGCCCTTCATCGACTGTTAGCAAATT
CGACATCAAATCAAACACTTGGAAACCTTGTAAACTCCTCAATCATGCAA
GATCTTCTGCAAGTGCTGCATATCTACAAGGTGGTCATGATGGTCGTGAA
TATCTTCGAAGCATGGAACGATTCGACCCAGTCTCTAGCGAATGGTCGGT
TGTTTGTCCTATGCCGAGCGTGCGCAGCGGTATCGGAGTCACGGCTGCTC
AACATGAAATTTTCGTCTTCGGTGGACATAATGGATCACGTTATTTGAGC
AGCGCGTACAAATATGATGTTTTTCAAGATAAGTGGACTTCTATACCTGA
TATGACTACTGCTAGATGCGACATGGCTGTTATTTCGATGGACTCGCCAG
AAAATTGATCTGCAGAATGCTATGACCCTTACACTGACACATGGACCGAA
ATCGAGAGTATGAACTACCACCGGAGCTCGTTCGCTGCCGTCACCATGGA
TCAATACATTTACGTGTTAGGAGGACATAACACGTGTACCGTCGAACGAT
ATGATACGTGCAATGCATGTTGGGAATTGATGCCTGCCATGAGCACCAAG
CGATTGAATTTCGGAGCAGCCCAAGTCTGTGGTTTTATTTATGTCGTTGG
GAATAAAGTTTATGCGATTGGGGGCTACGATGGTCAAATGTCTTTAAAGA
TCACATATATTTGACTGGTGGTATTTGCGAAAACCAAGATGGAAGAGGCT
CAACACATACACGATCAGTGTCTTGCTTTACAAACAAATCAGATAAATGG
TTCAATATTTCTCCTATGAGCCAACAACGAAGCAGTCATGTCACTATTAC
TCATGATGAAAATGAGAAGTGACATTACAAACTTAAAATTACAATATATG
CTCAATATGAAGCGTAACCCACAAAGGCTAGCTGATAAAAATTATCAGAA
TGGTTATAGACAGAGAAGAGAAAATGACAATGTCATTGTCATGGGTGGAA
AAGATAGTTATCTAAGCCCTTCATCGACTGTTAGCAAATTCGACATCAAA
TCAAACACTTGGAAACCTTGTAAACTCCTCAATCATGCAAGATCTTCTGC
AAGTGCTGCATATCTACAAGGTGGTCATGATGGTCGTGAATATCTTCGAA
GCATGGAACGATTCGACCCAGTCTCTAGCGAATGGTCGGTTGTTTGTCCT
ATGCCGAGCGTGCGCAGCGGTATCGGAGTCACGGCTGCTCAACATGAAAT
TTTCGTCTTCGGTGGACATAATGGATCACGTTATTTGAGCAGCGCGTACA
AATATGATGTTTTTCAAGATAAGTGGACTTCTATACCTGATATGACTACT
GCTAGATGCGACATGGCTGTTATTTCGATGGACTCGCCAGAAAATTGATC
TGCAGAATGCTATGACCCTTACACTGACACATGGACCGAAATCGAGAGTA
TGAACTACCACCGGAGCTCGTTCGCTGCCGTCACCATGGATCAATACATT
TACGTGTTAGGAGGACATAACACGTGTACCGTCGAACGATATGATACGTG
CAATGCATGTTGGGAATTGATGCCTGCCATGAGCACCAAGCGATTGAATT
TCGGAGCAGCCCAAGTCTGTGGTTTTATTTATGTCGTTGGGAATAAAGTT
TATGCGATTGGGGGCTACGATGGTCAAATGTCTTTAAAGATCACATATAT
TTGACTGGTGGTATTTGCGAAAACCAAGATGGAAGAGGCTCAACACATAC
ACGATCAGTGTCTTGCTTTACAAACAAATCAGATAAATGGTTCAATATTT
CTCCTATGAGCCAACAACGAAGCAGTCATGTCACTATTACTCATGATGAA
AATGAGAAGTGACATTACAAACTTAAAATTACAATATATGCTCAATATGA
AGCGTAACCCACAAAGGCTAGCTGATAAAAATTATCAGAATGGTTATAGA
CAGAGAAGAGAAAATGACAATGTCATTGTCATGGGTGGAAAAGATAGTTA
TCTAAGCCCTTCATCGACTGTTAGCAAATTCGACATCAAATCAAACACTT
GGAAACCTTGTAAACTCCTCAATCATGCAAGATCTTCTGCAAGTGCTGCA
TATCTACAAGGTGGTCATGATGGTCGTGAATATCTTCGAAGCATGGAACG
ATTCGACCCAGTCTCTAGCGAATGGTCGGTTGTTTGTCCTATGCCGAGCG
TGCGCAGCGGTATCGGAGTCACGGCTGCTCAACATGAAATTTTCGTCTTC
GGTGGACATAATGGATCACGTTATTTGAGCAGCGCGTACAAATATGATGT
TTTTCAAGATAAGTGGACTTCTATACCTGATATGACTACTGCTAGATGCG
ACATGGCTGTTATTTCGATGGACTCGCCAGAAAATTGATCTGCAGAATGC
TATGACCCTTACACTGACACATGGACCGAAATCGAGAGTATGAACTACCA
CCGGAGCTCGTTCGCTGCCGTCACCATGGATCAATACATTTACGTGTTAG
GAGGACATAACACGTGTACCGTCGAACGATATGATACGTGCAATGCATGT
TGGGAATTGATGCCTGCCATGAGCACCAAGCGATTGAATTTCGGAGCAGC
CCAAGTCTGTGGTTTTATTTATGTCGTTGGGAATAAAGTTTATGCGATTG
GGGGCTACGATGGTCAAATGTCTTTAAAGATCACATATATTTGACTGGTG
GTATTTGCGAAAACCAAGATGGAAGAGGCTCAACACATACACGATCAGTG
TCTTGCTTTACAAACAAATCAGATAAATGGTTCAATATTTCTCCTATGAG
CCAACAACGAAGCAGTCATGTCACTATTACTCATGATGAAAATGAGAAGT
GACATTACAAACTTAAAATTACAATATATGCTCAATATGAAGCGTAACCC
ACAAAGGCTAGCTGATAAAAATTATCAGAATGGTTATAGACAGAGAAGAG
AAAATGACAATGTCATTGTCATGGGTGGAAAAGATAGTTATCTAAGCCCT
TCATCGACTGTTAGCAAATTCGACATCAAATCAAACACTTGGAAACCTTG
TAAACTCCTCAATCATGCAAGATCTTCTGCAAGTGCTGCATATCTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009729XLOC_009729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017377-exon-sc0000266-1575043694:100807..100948TCONS_00017377-exon-sc0000266-1575043694:100807..100948Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1575043694:100203..100501TCONS_00017377-exon-sc0000266-1575043694:100203..100501Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1575043694:99645..99800TCONS_00017377-exon-sc0000266-1575043694:99645..99800Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1575043694:96744..96793TCONS_00017377-exon-sc0000266-1575043694:96744..96793Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1575043694:94963..95203TCONS_00017377-exon-sc0000266-1575043694:94963..95203Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1575043694:94220..94499TCONS_00017377-exon-sc0000266-1575043694:94220..94499Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1575043694:93839..93967TCONS_00017377-exon-sc0000266-1575043694:93839..93967Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1510915933:100807..100948TCONS_00017377-exon-sc0000266-1510915933:100807..100948Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1510915933:100203..100501TCONS_00017377-exon-sc0000266-1510915933:100203..100501Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1510915933:99645..99800TCONS_00017377-exon-sc0000266-1510915933:99645..99800Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1510915933:96744..96793TCONS_00017377-exon-sc0000266-1510915933:96744..96793Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1510915933:94963..95203TCONS_00017377-exon-sc0000266-1510915933:94963..95203Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1510915933:94220..94499TCONS_00017377-exon-sc0000266-1510915933:94220..94499Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1510915933:93839..93967TCONS_00017377-exon-sc0000266-1510915933:93839..93967Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1491911889:100807..100948TCONS_00017377-exon-sc0000266-1491911889:100807..100948Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1491911889:100203..100501TCONS_00017377-exon-sc0000266-1491911889:100203..100501Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1491911889:99645..99800TCONS_00017377-exon-sc0000266-1491911889:99645..99800Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1491911889:96744..96793TCONS_00017377-exon-sc0000266-1491911889:96744..96793Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1491911889:94963..95203TCONS_00017377-exon-sc0000266-1491911889:94963..95203Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1491911889:94220..94499TCONS_00017377-exon-sc0000266-1491911889:94220..94499Clytia hemisphaericaexon
TCONS_00017377-exon-sc0000266-1491911889:93839..93967TCONS_00017377-exon-sc0000266-1491911889:93839..93967Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017377-proteinTCONS_00017377-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:93839..100948 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170672	0.946914	0	2.11545e-09	1.16262	0.698355	4.43748	4.8875	4.35298	3.85795	1.91756	3.87435	5.17558	3.51786	5.27162	6.07543	10.9291	8.25424	2.43678	1.74882	1.10977	0	0	0	4.68497	2.61029	0	0.00098133	1.5359e-08	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006652Kelch_1
IPR015915Kelch-typ_b-propeller
IPR011043Gal_Oxase/kelch_b-propeller
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00017377 vs. Swiss-Prot (Human)
Match: KLH28 (Kelch-like protein 28 OS=Homo sapiens GN=KLHL28 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.485e-55
Identity = 101/296 (34.12%), Postives = 157/296 (53.04%), Query Frame = 3 
Query:  279 RQRRENDNVIVMGGKDSYLSPSSTVSKFDIKSNTWKPCKLLNHARSSASAAYLQDHIYLTGGICENQDGRGST---HTRSVSCFTNKSDKWFNISPMSQQRSSHVTITHGNKVYAIGGYDGQMSLKSAECYDPYTDTWTEIESMNYHRSSFAAVTMDQYIYVLGGHNTC---TVERYDTCNACWELMPAMSTKRLNFGAAQVCGFIYVVGGHDGREYLRSMERFDPVSSEWSVVCPMPSVRSGIGVTAAQHEIFVFGGHNGSRYLSSAYKYDVFQDKWTSIPDMTTARCDMAVISM 1148
            R R     +  +GGK    +   +V  +  ++++W     LN  R       L   +Y+ GGI  N    G T   H  SV C+   ++ W ++  M++ RS+   +    ++YA+GGYDGQ  L+S E Y P    W  +  M   RS FAA  +D  IY +GG+      +VERYD     WE++ +M+ KR++FG   + GFI+VVGGH+G  +L S+ER+DP  ++W+V  PM   R+G+G     + ++V GGH+GS YL++  KYD   D W     M   RC+  + ++
Sbjct:  277 RPRCAPKVLCAVGGKSGLFACLDSVEMYFPQNDSWIGLAPLNIPRYEFGICVLDQKVYVIGGIATNVRP-GVTIRKHENSVECWNPDTNTWTSLERMNESRSTLGVVVLAGELYALGGYDGQSYLQSVEKYIPKIRKWQPVAPMTTTRSCFAAAVLDGMIYAIGGYGPAHMNSVERYDPSKDSWEMVASMADKRIHFGVGVMLGFIFVVGGHNGVSHLSSIERYDPHQNQWTVCRPMKEPRTGVGAAVIDNYLYVVGGHSGSSYLNTVQKYDPISDTWLDSAGMIYCRCNFGLTAL 571

HSP 2 Score: 128.642 bits (322), Expect = 3.088e-32
Identity = 76/228 (33.33%), Postives = 113/228 (49.56%), Query Frame = 3 
Query:  507 SVSCFTNKSDKWFNISPMSQQRSSHVTITHGNKVYAIGGYDGQMSL--------KSAECYDPYTDTWTEIESMNYHRSSFAAVTMDQYIYVLGGHN----TCTVERYDTCNACWELMPAMSTKRLNFGAAQVCGFIYVVGGHDGREYLRSMERFDPVSSEWSVVCPMPSVRSGIGVTAAQHEIFVFGGHNGSRYLSSAYKYDVFQDKWTSIPDMTTARCDMAVISMDS 1154
            SV  +  ++D W  ++P++  R          KVY IGG    +           S EC++P T+TWT +E MN  RS+   V +   +Y LGG++      +VE+Y      W+ +  M+T R  F AA + G IY +GG+ G  ++ S+ER+DP    W +V  M   R   GV      IFV GGHNG  +LSS  +YD  Q++WT    M   R  +    +D+
Sbjct:  300 SVEMYFPQNDSWIGLAPLNIPRYEFGICVLDQKVYVIGGIATNVRPGVTIRKHENSVECWNPDTNTWTSLERMNESRSTLGVVVLAGELYALGGYDGQSYLQSVEKYIPKIRKWQPVAPMTTTRSCFAAAVLDGMIYAIGGY-GPAHMNSVERYDPSKDSWEMVASMADKRIHFGVGVMLGFIFVVGGHNGVSHLSSIERYDPHQNQWTVCRPMKEPRTGVGAAVIDN 526
The following BLAST results are available for this feature:
BLAST of TCONS_00017377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLH285.485e-5534.12Kelch-like protein 28 OS=Homo sapiens GN=KLHL28 PE... [more]
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