TCONS_00017372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017372
Unique NameTCONS_00017372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017372 ID=TCONS_00017372|Name=TCONS_00017372|organism=Clytia hemisphaerica|type=transcript|length=945bp
GTGTACGATTTTTTGTAATGATCGGTAAGagaataatattttattttaaa
acaataTTGTCAAATAAGACAATTCCATAATGAGTTTTGACGTATTACCA
AATGAGATATTGAAACTTATTGTATCATTCCTGTCTAAGGAGGATGCCAA
AAAGGTCTCCCTCACTTCAAAAAGGATGTACGATTTGACTTTGGATAGGA
TTTGGTACAAAATTTAACcaaaataacatttttgtgGAGATAAAAAAGGA
ATAAGTGAAGAAATCCGAACTGTTGGATTTTTCAAGAAACTTTCGCATCT
ACCCATACGTGAAATAAGTATATATTATTACCCGAAATGGTCTCGTAAAA
AAGTTTATAAAGCTTTCCCACTTCTCAAACTGTTACATTTTGACCAATTA
GAATCAAACACGGTGTTAGGATTCAATACCAAATACTTTATTACATTTAA
AATGCCCATGGTAATCTACACCCATATGCTAGAAGTTAGCAATCAAAGTc
atttttatgagcttttaCAAGTGATGAAAACTTGTAACGTTGTAAAACTT
GTTATCAATCATTTTTTGGATTATCGAGATACATATCAGATTAGATGGTC
GCCTGATCAACTGGAAACGATCATCAATGAATAAGTACCAAAGATAACAA
TTTCTTTAGACTGTCTTGCATTAACTCGAAAGAATGCAaaacaattttcg
aaaattatttcaagaaaTAAAAATTGTAAGGTTTATAAAAGAACAGCGAA
ACACTACCGTTATTTATTTTATGCAAGGGATATTGAATTGATGGCTAGAT
ATGATATCAAGATCACCAAGCTATATAGGTTTTTACCCGAGGATTTAGCC
ATGTTCAAAGGTTTACCCGTGAAATACATTTATTTGGCAGCTTTGGATTT
AACGAAGAAGAACATTCCAGATTTTGGTCGAATTATCATGGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000266:337498..345072+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017372 ID=TCONS_00017372|Name=TCONS_00017372|organism=Clytia hemisphaerica|type=transcript|length=7575bp|location=Sequence derived from alignment at sc0000266:337498..345072+ (Clytia hemisphaerica)
GTGTACGATTTTTTGTAATGATCGGTAAGagaataatattttattttaaa
acaataTTGTCAAATAAGACAATTCCATAATGAGTTTTGACGTATTACCA
AATGAGATATTGAAACTTATTGTATCATTCCTGTCTAAGGAGGATGCCAA
AAAGGTCTCCCTCACTTCAAAAAAAATGTACGATTTGACTTTGGACAGGA
TTTGGTACaaaattaaaccaaaatatcatcTCTTTGGTGATAAAATAGGG
ATCAGTGAAGAGATCCGAACTGTTGGTTTTTTCAAGAAACTTTCGCATCT
ACCCATACGTGAAATAAGTATATATTATTTCCCGAAATGGTCATGTAAAA
AAGTTCATAAAGCTTTCCCACTTCTCAAACTGTTACATTTTGACCGATTA
GAATCGAGCACGGTGTTAGGATTCAATACCAAATACTTCAGTCAATTTAA
AATGCCCATGGTAATCTATACACATATGCTAGAAGTTAGCAATCAAAGTC
ATTTTGATGAGCTTTTACAAGTGATGAAAACTTGTAACGTTGTAAAATTT
GTTATCAATCATTTTTGTGAATATCGAGATACATATCAGATTAGATGGTC
GCCTGTTCAACTGGAAACGATCATTAATGCAGTACCAAAGATAACAATTT
CTTTAGACTGTCTTGCATTAACTCGAAAGAATGcaaaacaattttacaaa
agtATTTCAAGAAATAAAAATTGTAAGGTTTATAAAAGAACAGCGAAACA
CTACCGTTATTTATTTTCTGCAAGGGATATTGGATTGATGGCTAGATATG
ATATCAAGATCACCAAGCTATATAGCGGCTATCTTAAGATACCCTCTGTC
GAAAATGACCAGTCGTTGCAAAAGTTTGCTGAAGCGCTCACCAAATTAAG
TCACCTCAAATCTTTCGAATTCCACTATGAGCATTTACCAACTACAATCG
ACTATTTTACCAATGTTCCAATAACGTCCCTGTCCACTCACGCATTTGAA
ATATCGGGAAAAGATAAGATTGAAAAAGTAGTGCAGACATTGTCTAAAAT
GAAGTCTCTTCGTCGTTTTTCTATTGGTTCGAGTGACTATAAGTTTTTAC
CCGAGGACTTAGCCATGTTTAAAGGTTTACCCGTGAAATACATTTATTTG
GCAGCTTTGGATTTAACGAAGAAGAACATTCCAGATTTTCGTCGAATTAT
CATGGAAATGAATGTAGAACACATTGGGCTTTCCCCTTATTTTTCTGATG
GTAGCAGACGTCATAGTAAGATGGAAGAACTTGGCATTGAAATGAAAACA
CACGGGCTTGGTGGTATCTACCAAACCATATAGTACAGTTTGCCTTTCAT
TTATGAGCTTAAAACTCATACTGGTGTTCTCCTATTATGACTTAAGGTTA
GTCGTTGAAAGGTGGAATTGATAAAAGAAGCGAACTCATTTTTCATTACG
ATTTTATGtaaaggttggaaattttactCCATTTAATCTCGTTGTGCCCC
TTTTTTGGGAAGGTTCTCCATCTTTCAATAAAATGTTAAACAGGGACGGG
GCTCTTCAAAATTTGATCTCCTTGGTCTCCTTGGTGGACCTAGAtacaag
aataaacaatgtttttcttttttttttaattgtcattcaccaatgtttta
cagaccctcttgataattaaaagtttttaatcgtgaaggATAAATACAAC
AGCAGAATCGTTGGccaagaggaaatccaaatttcacaagtttgtaatta
aaaaagttaaatttcatatcaaattttaatgtctaggtacagagatagaa
caaggctttatCAAATGTGCGGTATCCAGCTTCGCTATTAAATATCCCTG
GTTTGAGTATATAGTATATATTTCCAATCCAATGTTCTTGAAAATATCAG
GTCAGCTTTGGCTTAAACAGAATATATCGCTGATCGAGTTATCGATATTT
TACCGCCAAATAACTCTCTTGAGACTTATACTTTAATGGGGATAAACGTT
CGTGgggattcaaaaatttcgcggggacttaatttcgcgtgtggcactat
tgggtaggcaatattttcacgattttgtgacttctactttcaaatcatgc
atattggttgttgaaatacacattatttgcgcttctttgatgcaagtaac
cattgaaatagtatttatttgacatattttgagtattGTTTAGatatatt
tcgcggatgaggcccttccaaacacccaaatccgcggaatccgcgaaatt
caatccccgcgaaagtttaccccattaaggtatgtgttcacctttttccg
attttttgtcaaaaaaaaaattttcagtcaaagtggaagaaaagttactg
gatttcattttggtaaaatcgcgatcttaaaatcttcttttgattcagag
ttataaccatttaaatttcaaaacaaagttcgtcttatgatggattattt
actcaaataattgtctatttcggaaacaacaaagacaaaagagagaattc
agctgatttATTCTCaactctattgaatagtaatatttttgattttcacg
ttcacgcaaggtTTTTCAAtttacgcattcacgcattgttttctattttc
acgcattcacgcaactgGCGGAGAGCCtcattcacgtattcacgcaaacc
gctagGGGGAGGAGGCAGTGAGGTAGATCATGTCACTTCACTatgacaaa
atcaaaaagtcttttctgaaaattttacgCTACACTAATCTACGCACCAC
TATTTTCTACGGATTTATTCACTTCTTCTATTTCCGAACGTATTTTtatt
attggcccagcgctagcgaagGGGCCTTTCAAGAGGAACTTTCCGTGTGT
CTGTCCTGTCCTGTCTGTCCGCAGTCCGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGATGCTCATACTTATTGACCTAAAAGCTTTAAAAGACTATTT
TGAAAGTTGCATTTTTtacactgattttgcttgagggTTTTCATCGATGT
TTTCTCATTACTGTTCAAAATGTAGGTTCAAACACCAACCAGATTATTAC
AGGTATGTTCTCTTATGTAATGTTTATTATTCTCTTGCTATCTCCTTGAT
GATTAAGAGGAATCAGACATTTTATCAGAATAATTATAACTTTTAACGTG
TGCGATGAAAAAATGTGTGTTCAGGCTTTTATATTCGAcaagaaaattta
ttcaaacagCAAGATGTTGACTAGACTAGCCTCTATTTGTACTATTGTTG
Gacattttgatactttttctgcataaaattacatggtgaaattttatatt
tgaaaCAAGCTTTTTTTCTAGGAGTCTCGATCATGCTCAGTTATTTTAGT
TTCAGTACATACCAGACGACATAATTAATCAAAATGTTCAAAGGTTGCTG
CACtgaaattgtgagtattcgattaagttccacttaaagggacataaaag
catagctgtcaactctcccgcattgagtgggagactcccgcatgtcaacg
atttctcccgcgtgaagaaaattctgccaaatctcccgcatttttgggat
tttctcccgcatctcccgcatttccaaaatttttctgattttggaaaatc
caAACGGCGAAATTTCTGGATTTTGAAAGATCGGAACGAAAAATTCCCca
atttcccgaaaaaaatttccaataaaatcggattttactagaaaatttcc
ccgatttcccgattttccgattttgaaaaatcggattatcggggaaaatt
tttccgacttggagctctcccgcatttttgtgaGGCGAAGTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACACCATCTTGAAAT
AGCCTCATTTTGGGAAAAACACTTACTGAATTATGATCTGCATCTGAAAG
TGAGTcactgtacaaaatttcagccaataactcaaaattgttcagttttt
atggacatttttatataaaaattttgcatttttgagtGCTGCTGAGGCTG
CAGCCGCTGTGGTTgcaggaaaattttttcgatgctggtttctttttaat
tttactttttatcatttgtttttgctCCCTTTAGTTAGAGCTTTAGCACA
ATCATGTTTGTTAAAGATTtctcaaaagttttatttttacatagatAAGT
TTTCCCGTTTCAtgtcagacacatgtttcatatcagtttGTTATATCGTG
CTAATATTNNtaaaattgatgagtaagcaaactttatcactcttatttag
aaacaaaacttttaatgctgggccttcatgcccttgggcttcttgttttt
ttaaatttgaatttcgatttttaaagaTCAGTAGAGGCCTTTTGTAAATA
TTATATGAATGAAATAAATTGGTTTTAATTATTTCGTCGCACGTTCTTAT
ATTTCTGAAATCATATATTCATAACATTATATATTGGATTCTCTATTTGT
AATCGTCCTCGTTTGAGAAAACTTGGTGACTCGATTGAATCTAGAATATT
TTGGAAAGTTACTTGATGTTGTTGCAACATATAAATACTTTTTTGATTAT
TCTTGGCATCATAGCTAATCACTTAAATACTTTGGCATCATAACTAATCA
CTGATAATTTCTCGTttagaaaaaatacaaaaaaatagaataaagaGAAC
AATTCCTTGCTGTTTGTTTGTTGCCATACAAAACGATGTCAATAGAAGAA
GCTTGATGGTTGATTGATGGTTTGATTGATGGTTTGATTGATGCTAACGA
GTTTTGAAGTATTACCAAATGaaatattaagcagatattcaataggtaaa
aaaagttggttattgagatttattaacctgaggtgatgtaatattcaacg
aggcgaagccgagttgaatatacatcaccgagggttaataaatccaataa
ccaacgaaaacctattgaatatatatgttttattatatacctaaggcaaa
aacaaaacattaattatGTTAATAGTTGAGCGTTTCacttaaaacactcc
cataatcgaacgttcgaatgtttttcttttttaatgattttcttaattac
tttgaatcataaaatttgttcatgaaattgacgatcgatttattttaatg
aatttctttgatgcAACAAGAgcgataaaaaaaatcaaactttgaaagca
aaagttgaaaaaaaaattctaccgtggtataatagccatggtatatcagg
aattattcaatggctgtttttgcctacaggtatataataatgaaACTTAT
CGTATCATTCCTCTCTAAGGGGGATGCGAAAAAGGTCTCCCTCACTTCAA
AAAGGATGTACGATTTGACTTTGGATAGGATTTGGTACAAAATTTAACca
aaataacatttttgtgGAGATAAAAAAGGAATAAGTGAAGAAATCCGAAC
TGTTGGATTTTTCAAGAAACTTTCGCATCTACCCATACGTGAAATAAGTA
TATATTATTACCCGAAATGGTCTCGTAAAAAAGTTTATAAAGCTTTCCCA
CTTCTCAAACTGTTACATTTTGACCAATTAGAATCAAACACGGTGTTAGG
ATTCAATACCAAATACTTTATTACATTTAAAATGCCCATGGTAATCTACA
CCCATATGCTAGAAGTTAGCAATCAAAGTcatttttatgagcttttaCAA
GTGATGAAAACTTGTAACGTTGTAAAACTTGTTATCAATCATTTTTTGGA
TTATCGAGATACATATCAGATTAGATGGTCGCCTGATCAACTGGAAACGA
TCATCAATGAATAAGTACCAAAGATAACAATTTCTTTAGACTGTCTTGCA
TTAACTCGAAAGAATGCAaaacaattttcgaaaattatttcaagaaaTAA
AAATTGTAAGGTTTATAAAAGAACAGCGAAACACTACCGTTATTTATTTT
ATGCAAGGGATATTGAATTGATGGCTAGATATGATATCAAGATCACCAAG
CTATATAGGTTTTTACCCGAGGATTTAGCCATGTTCAAAGGTTTACCCGT
GAAATACATTTATTTGGCAGCTTTGGATTTAACGAAGAAGAACATTCCAG
ATTTTGGTCGAATTATCATGGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009725XLOC_009725Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017372-exon-sc0000266-1491911889:337498..337651TCONS_00017372-exon-sc0000266-1491911889:337498..337651Clytia hemisphaericaexon
TCONS_00017372-exon-sc0000266-1510915933:337498..337651TCONS_00017372-exon-sc0000266-1510915933:337498..337651Clytia hemisphaericaexon
TCONS_00017372-exon-sc0000266-1575043694:337498..337651TCONS_00017372-exon-sc0000266-1575043694:337498..337651Clytia hemisphaericaexon
TCONS_00017372-exon-sc0000266-1491911889:344282..345072TCONS_00017372-exon-sc0000266-1491911889:344282..345072Clytia hemisphaericaexon
TCONS_00017372-exon-sc0000266-1510915933:344282..345072TCONS_00017372-exon-sc0000266-1510915933:344282..345072Clytia hemisphaericaexon
TCONS_00017372-exon-sc0000266-1575043694:344282..345072TCONS_00017372-exon-sc0000266-1575043694:344282..345072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:337498..345072 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.35371	3.74787	3.72427	3.38719	1.77574	0.63713	1.22585	1.19278	0.665104	0.713723	0.810457	1.00274	0.66297	0.270514	0.430833	0.534966	0.684972	0.675591	0.945599	1.2955	2.46596	1.48453	1.67467	2.02968	0.922503	0.770884	1.5021	0.506534	0.710095	0.738525
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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