TCONS_00017370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017370
Unique NameTCONS_00017370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length954

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017370 ID=TCONS_00017370|Name=TCONS_00017370|organism=Clytia hemisphaerica|type=transcript|length=954bp
GGAGATTTGGTGTACGATTTTTTGTAATGATCGGTAAGagaataatattt
tattttaaaacaataTTGTCAAATAAGACAATTCCATAATGAGTTTTGAC
GTATTACCAAATGAGATATTGAAACTTATTGTATCATTCCTGTCTAAGGA
GGATGCCAAAAAGGTCTCCCTCACTTCAAAAAAAATGTACGATTTGACTT
TGGACAGGATTTGGTACaaaattaaaccaaaatatcatcTCTTTGGTGAT
AAAATAGGGATCAGTGAAGAGATCCGAACTGTTGGTTTTTTCAAGAAACT
TTCGCATCTACCCATACGTGAAATAAGTATATATTATTTCCCGAAATGGT
CATGTAAAAAAGTTCATAAAGCTTTCCCACTTCTCAAACTGTTACATTTT
GACCGATTAGAATCGAGCACGGTGTTAGGATTCAATACCAAATACTTCAG
TCAATTTAAAATGCCCATGGTAATCTACACCCATATGCTAGAAGTTAGCA
ATCAAAGTcatttttatgagcttttaCAAGTGATGAAAACTTGTAACGTT
GTAAAACTTGTTATCAATCATTTTTTGGATTATCGAGATACATATCAGAT
TAGATGGTCGCCTGATCAACTGGAAACGATCATCAATGAATAAGTACCAA
AGATAACAATTTCTTTAGACTGTCTTGCATTAACTCGAAAGAATGCAaaa
caattttcgaaaattatttcaagaaaTAAAAATTGTAAGGTTTATAAAAG
AACAGCGAAACACTACCGTTATTTATTTTATGCAAGGGATATTGAATTGA
TGGCTAGATATGATATCAAGATCACCAAGCTATATAGGTTTTTACCCGAG
GATTTAGCCATGTTCAAAGGTTTACCCGTGAAATACATTTATTTGGCAGC
TTTGGATTTAACGAAGAAGAACATTCCAGATTTTGGTCGAATTATCATGG
AAAT
Run BLAST on NCBI

transcript from alignment at sc0000266:337489..345072+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017370 ID=TCONS_00017370|Name=TCONS_00017370|organism=Clytia hemisphaerica|type=transcript|length=7584bp|location=Sequence derived from alignment at sc0000266:337489..345072+ (Clytia hemisphaerica)
GGAGATTTGGTGTACGATTTTTTGTAATGATCGGTAAGagaataatattt
tattttaaaacaataTTGTCAAATAAGACAATTCCATAATGAGTTTTGAC
GTATTACCAAATGAGATATTGAAACTTATTGTATCATTCCTGTCTAAGGA
GGATGCCAAAAAGGTCTCCCTCACTTCAAAAAAAATGTACGATTTGACTT
TGGACAGGATTTGGTACaaaattaaaccaaaatatcatcTCTTTGGTGAT
AAAATAGGGATCAGTGAAGAGATCCGAACTGTTGGTTTTTTCAAGAAACT
TTCGCATCTACCCATACGTGAAATAAGTATATATTATTTCCCGAAATGGT
CATGTAAAAAAGTTCATAAAGCTTTCCCACTTCTCAAACTGTTACATTTT
GACCGATTAGAATCGAGCACGGTGTTAGGATTCAATACCAAATACTTCAG
TCAATTTAAAATGCCCATGGTAATCTATACACATATGCTAGAAGTTAGCA
ATCAAAGTCATTTTGATGAGCTTTTACAAGTGATGAAAACTTGTAACGTT
GTAAAATTTGTTATCAATCATTTTTGTGAATATCGAGATACATATCAGAT
TAGATGGTCGCCTGTTCAACTGGAAACGATCATTAATGCAGTACCAAAGA
TAACAATTTCTTTAGACTGTCTTGCATTAACTCGAAAGAATGcaaaacaa
ttttacaaaagtATTTCAAGAAATAAAAATTGTAAGGTTTATAAAAGAAC
AGCGAAACACTACCGTTATTTATTTTCTGCAAGGGATATTGGATTGATGG
CTAGATATGATATCAAGATCACCAAGCTATATAGCGGCTATCTTAAGATA
CCCTCTGTCGAAAATGACCAGTCGTTGCAAAAGTTTGCTGAAGCGCTCAC
CAAATTAAGTCACCTCAAATCTTTCGAATTCCACTATGAGCATTTACCAA
CTACAATCGACTATTTTACCAATGTTCCAATAACGTCCCTGTCCACTCAC
GCATTTGAAATATCGGGAAAAGATAAGATTGAAAAAGTAGTGCAGACATT
GTCTAAAATGAAGTCTCTTCGTCGTTTTTCTATTGGTTCGAGTGACTATA
AGTTTTTACCCGAGGACTTAGCCATGTTTAAAGGTTTACCCGTGAAATAC
ATTTATTTGGCAGCTTTGGATTTAACGAAGAAGAACATTCCAGATTTTCG
TCGAATTATCATGGAAATGAATGTAGAACACATTGGGCTTTCCCCTTATT
TTTCTGATGGTAGCAGACGTCATAGTAAGATGGAAGAACTTGGCATTGAA
ATGAAAACACACGGGCTTGGTGGTATCTACCAAACCATATAGTACAGTTT
GCCTTTCATTTATGAGCTTAAAACTCATACTGGTGTTCTCCTATTATGAC
TTAAGGTTAGTCGTTGAAAGGTGGAATTGATAAAAGAAGCGAACTCATTT
TTCATTACGATTTTATGtaaaggttggaaattttactCCATTTAATCTCG
TTGTGCCCCTTTTTTGGGAAGGTTCTCCATCTTTCAATAAAATGTTAAAC
AGGGACGGGGCTCTTCAAAATTTGATCTCCTTGGTCTCCTTGGTGGACCT
AGAtacaagaataaacaatgtttttcttttttttttaattgtcattcacc
aatgttttacagaccctcttgataattaaaagtttttaatcgtgaaggAT
AAATACAACAGCAGAATCGTTGGccaagaggaaatccaaatttcacaagt
ttgtaattaaaaaagttaaatttcatatcaaattttaatgtctaggtaca
gagatagaacaaggctttatCAAATGTGCGGTATCCAGCTTCGCTATTAA
ATATCCCTGGTTTGAGTATATAGTATATATTTCCAATCCAATGTTCTTGA
AAATATCAGGTCAGCTTTGGCTTAAACAGAATATATCGCTGATCGAGTTA
TCGATATTTTACCGCCAAATAACTCTCTTGAGACTTATACTTTAATGGGG
ATAAACGTTCGTGgggattcaaaaatttcgcggggacttaatttcgcgtg
tggcactattgggtaggcaatattttcacgattttgtgacttctactttc
aaatcatgcatattggttgttgaaatacacattatttgcgcttctttgat
gcaagtaaccattgaaatagtatttatttgacatattttgagtattGTTT
AGatatatttcgcggatgaggcccttccaaacacccaaatccgcggaatc
cgcgaaattcaatccccgcgaaagtttaccccattaaggtatgtgttcac
ctttttccgattttttgtcaaaaaaaaaattttcagtcaaagtggaagaa
aagttactggatttcattttggtaaaatcgcgatcttaaaatcttctttt
gattcagagttataaccatttaaatttcaaaacaaagttcgtcttatgat
ggattatttactcaaataattgtctatttcggaaacaacaaagacaaaag
agagaattcagctgatttATTCTCaactctattgaatagtaatatttttg
attttcacgttcacgcaaggtTTTTCAAtttacgcattcacgcattgttt
tctattttcacgcattcacgcaactgGCGGAGAGCCtcattcacgtattc
acgcaaaccgctagGGGGAGGAGGCAGTGAGGTAGATCATGTCACTTCAC
TatgacaaaatcaaaaagtcttttctgaaaattttacgCTACACTAATCT
ACGCACCACTATTTTCTACGGATTTATTCACTTCTTCTATTTCCGAACGT
ATTTTtattattggcccagcgctagcgaagGGGCCTTTCAAGAGGAACTT
TCCGTGTGTCTGTCCTGTCCTGTCTGTCCGCAGTCCGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGATGCTCATACTTATTGACCTAAAAGCTTTAAA
AGACTATTTTGAAAGTTGCATTTTTtacactgattttgcttgagggTTTT
CATCGATGTTTTCTCATTACTGTTCAAAATGTAGGTTCAAACACCAACCA
GATTATTACAGGTATGTTCTCTTATGTAATGTTTATTATTCTCTTGCTAT
CTCCTTGATGATTAAGAGGAATCAGACATTTTATCAGAATAATTATAACT
TTTAACGTGTGCGATGAAAAAATGTGTGTTCAGGCTTTTATATTCGAcaa
gaaaatttattcaaacagCAAGATGTTGACTAGACTAGCCTCTATTTGTA
CTATTGTTGGacattttgatactttttctgcataaaattacatggtgaaa
ttttatatttgaaaCAAGCTTTTTTTCTAGGAGTCTCGATCATGCTCAGT
TATTTTAGTTTCAGTACATACCAGACGACATAATTAATCAAAATGTTCAA
AGGTTGCTGCACtgaaattgtgagtattcgattaagttccacttaaaggg
acataaaagcatagctgtcaactctcccgcattgagtgggagactcccgc
atgtcaacgatttctcccgcgtgaagaaaattctgccaaatctcccgcat
ttttgggattttctcccgcatctcccgcatttccaaaatttttctgattt
tggaaaatccaAACGGCGAAATTTCTGGATTTTGAAAGATCGGAACGAAA
AATTCCCcaatttcccgaaaaaaatttccaataaaatcggattttactag
aaaatttccccgatttcccgattttccgattttgaaaaatcggattatcg
gggaaaatttttccgacttggagctctcccgcatttttgtgaGGCGAAGT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACACCA
TCTTGAAATAGCCTCATTTTGGGAAAAACACTTACTGAATTATGATCTGC
ATCTGAAAGTGAGTcactgtacaaaatttcagccaataactcaaaattgt
tcagtttttatggacatttttatataaaaattttgcatttttgagtGCTG
CTGAGGCTGCAGCCGCTGTGGTTgcaggaaaattttttcgatgctggttt
ctttttaattttactttttatcatttgtttttgctCCCTTTAGTTAGAGC
TTTAGCACAATCATGTTTGTTAAAGATTtctcaaaagttttatttttaca
tagatAAGTTTTCCCGTTTCAtgtcagacacatgtttcatatcagtttGT
TATATCGTGCTAATATTNNtaaaattgatgagtaagcaaactttatcact
cttatttagaaacaaaacttttaatgctgggccttcatgcccttgggctt
cttgtttttttaaatttgaatttcgatttttaaagaTCAGTAGAGGCCTT
TTGTAAATATTATATGAATGAAATAAATTGGTTTTAATTATTTCGTCGCA
CGTTCTTATATTTCTGAAATCATATATTCATAACATTATATATTGGATTC
TCTATTTGTAATCGTCCTCGTTTGAGAAAACTTGGTGACTCGATTGAATC
TAGAATATTTTGGAAAGTTACTTGATGTTGTTGCAACATATAAATACTTT
TTTGATTATTCTTGGCATCATAGCTAATCACTTAAATACTTTGGCATCAT
AACTAATCACTGATAATTTCTCGTttagaaaaaatacaaaaaaatagaat
aaagaGAACAATTCCTTGCTGTTTGTTTGTTGCCATACAAAACGATGTCA
ATAGAAGAAGCTTGATGGTTGATTGATGGTTTGATTGATGGTTTGATTGA
TGCTAACGAGTTTTGAAGTATTACCAAATGaaatattaagcagatattca
ataggtaaaaaaagttggttattgagatttattaacctgaggtgatgtaa
tattcaacgaggcgaagccgagttgaatatacatcaccgagggttaataa
atccaataaccaacgaaaacctattgaatatatatgttttattatatacc
taaggcaaaaacaaaacattaattatGTTAATAGTTGAGCGTTTCactta
aaacactcccataatcgaacgttcgaatgtttttcttttttaatgatttt
cttaattactttgaatcataaaatttgttcatgaaattgacgatcgattt
attttaatgaatttctttgatgcAACAAGAgcgataaaaaaaatcaaact
ttgaaagcaaaagttgaaaaaaaaattctaccgtggtataatagccatgg
tatatcaggaattattcaatggctgtttttgcctacaggtatataataat
gaaACTTATCGTATCATTCCTCTCTAAGGGGGATGCGAAAAAGGTCTCCC
TCACTTCAAAAAGGATGTACGATTTGACTTTGGATAGGATTTGGTACAAA
ATTTAACcaaaataacatttttgtgGAGATAAAAAAGGAATAAGTGAAGA
AATCCGAACTGTTGGATTTTTCAAGAAACTTTCGCATCTACCCATACGTG
AAATAAGTATATATTATTACCCGAAATGGTCTCGTAAAAAAGTTTATAAA
GCTTTCCCACTTCTCAAACTGTTACATTTTGACCAATTAGAATCAAACAC
GGTGTTAGGATTCAATACCAAATACTTTATTACATTTAAAATGCCCATGG
TAATCTACACCCATATGCTAGAAGTTAGCAATCAAAGTcatttttatgag
cttttaCAAGTGATGAAAACTTGTAACGTTGTAAAACTTGTTATCAATCA
TTTTTTGGATTATCGAGATACATATCAGATTAGATGGTCGCCTGATCAAC
TGGAAACGATCATCAATGAATAAGTACCAAAGATAACAATTTCTTTAGAC
TGTCTTGCATTAACTCGAAAGAATGCAaaacaattttcgaaaattatttc
aagaaaTAAAAATTGTAAGGTTTATAAAAGAACAGCGAAACACTACCGTT
ATTTATTTTATGCAAGGGATATTGAATTGATGGCTAGATATGATATCAAG
ATCACCAAGCTATATAGGTTTTTACCCGAGGATTTAGCCATGTTCAAAGG
TTTACCCGTGAAATACATTTATTTGGCAGCTTTGGATTTAACGAAGAAGA
ACATTCCAGATTTTGGTCGAATTATCATGGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009725XLOC_009725Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017370-exon-sc0000266-1491911889:337489..337941TCONS_00017370-exon-sc0000266-1491911889:337489..337941Clytia hemisphaericaexon
TCONS_00017370-exon-sc0000266-1510915933:337489..337941TCONS_00017370-exon-sc0000266-1510915933:337489..337941Clytia hemisphaericaexon
TCONS_00017370-exon-sc0000266-1575043694:337489..337941TCONS_00017370-exon-sc0000266-1575043694:337489..337941Clytia hemisphaericaexon
TCONS_00017370-exon-sc0000266-1491911889:344572..345072TCONS_00017370-exon-sc0000266-1491911889:344572..345072Clytia hemisphaericaexon
TCONS_00017370-exon-sc0000266-1510915933:344572..345072TCONS_00017370-exon-sc0000266-1510915933:344572..345072Clytia hemisphaericaexon
TCONS_00017370-exon-sc0000266-1575043694:344572..345072TCONS_00017370-exon-sc0000266-1575043694:344572..345072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:337489..345072 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06092	1.3051	1.07564	0.770993	0.661478	0.398473	0.681415	1.31366	0.189962	0	0.772452	0.0794443	0.297195	0.382445	0.249929	0.170589	0.108191	0.26127	0.533256	0	0.153858	0.681927	0.453501	0.549752	0	0.231806	0	0	0.540081	0.357167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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