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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017366 ID=TCONS_00017366|Name=TCONS_00017366|organism=Clytia hemisphaerica|type=transcript|length=9178bp protein sequence of TCONS_00017366-protein >TCONS_00017366-protein ID=TCONS_00017366-protein|Name=TCONS_00017366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2780bp MADIDPDTLLEWLTMGAGDERDMQVIALEQLCMLLLMSDNVDRCFESCPPRun BLAST on NCBI transcript from alignment at sc0000266:281446..304958+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017366 ID=TCONS_00017366|Name=TCONS_00017366|organism=Clytia hemisphaerica|type=transcript|length=23513bp|location=Sequence derived from alignment at sc0000266:281446..304958+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000266:281446..304958+ >TCONS_00017366 ID=TCONS_00017366|Name=TCONS_00017366|organism=Clytia hemisphaerica|type=CDS|length=325377bp|location=Sequence derived from alignment at sc0000266:281446..304958+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017366 vs. Swiss-Prot (Human)
Match: HECD1 (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=3) HSP 1 Score: 1482.62 bits (3837), Expect = 0.000e+0 Identity = 773/1369 (56.46%), Postives = 993/1369 (72.53%), Query Frame = 2
Query: 275 MADIDPDTLLEWLTMGAGDERDMQVIALEQLCMLLLMSDNVDRCFESCPPRSFLPALCHIFMDETAPDSILEVTARAITYYLDVSAECSRRIVTVDGAVKALCTRLVVVDITSRTSKDLAEQCVKVLELMCTREAGSIYEAGGLNCMVTFIREYGSQIHKDTLHSAMSVVARLCSKIEPTDETLEDCMDSLSKLLQHQDNNVADTALKCFACVADRFTRRGVDPAPLAKHGLTDELLKKLVSS-------AMACGNNASTXXXXXXXXXXXXXXXXXXXXXXXXMLCRGSPTITHDLLRSNLPDAIETAMNGDERCVLDTMRLVDLLLILLFEGRGALPKSASSSRASLGNLRKLDSTGDKSHRQLIDCIRSKDTDALIEAVDSSQFDVNFMDDVGQTLLNWASAFGTLEMVEFLCDRGADVNRGQRSSSLHYAACFGRPAVAKVLLRHGANPELRDEDGKTPLDKARERNDEGHKEVVRILQSPGEWLTIVAMDTTDTEASNXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGDQDQDKEITESPEKAVKGDPEVAPIYIKRLVPVFANTFQSSLIPSVKKATLSILKKMIHSIPAQMMEEVISGTVASQL----VDVIAVALNVEDDDEGHLAVFNCVQDMMTKGPNIFLIHFIRLGVLQKISEMASQFEIVDQDVIIDGKIQEKEEQTIPLEDATKVLAGLPYHWHDWCLVRGRDCLYLWSDFCAIELSNGSNGWFRFVLDGKLLTMYXXXXXXXXXXXXXXRTEFLEKLXXXXXXXXXXXXXXXILSALGGETLIVGNWTLSCKQEHQLHVINTDGQQATILKEDLPGFLFESNRGTKHTFTAEISLGPDFAFSWSGKQGKKFQSRKDQVRQKLSSLANSIYCKYFKDADLTPHGSMATLIQISKTLNDC--VNPNEPLL-PEN--KDKLYSALTELCNIVTNETMLSSYEIQTSGLVTALNNCLNKXX---XXXXXXXXXKEQNYPKEAFKKVFGDQSKIDAESGGPAITLVRKLIMVLESSEKLPVLAYESSGTGTGLQVLLKRLRFKLERGGRSSDFINRSGKNLKMEPLTTVGEIEAYLLKMVEKKWYDYERSSFKFVKHFKENADQHKTFEHQSDFDQNGIIYWLGTNANETTDWINPARHNVVLMSSSEGRSLPYGRLEDIINRDSAPVNCHTNDNKSAWFTLDIGVNVIPSAYTLRHARGYGRSAIRNWLFQASKDATTWTTLKTHENDESLQDPGSTHTWKFSVEEIGEETEGWHYFRIQQNGTNASGQTYYLSLSGFEIYGKVTSAVEQMKPLATPEADNTQKKQRRIFRSQILRHMALSAK--EGSDWKLLHNQSRAKAANT-TDAKNDTWVDVSW 4315
MAD+DPDTLLEWL MG GDERDMQ+IALEQLCMLLLMSDNVDRCFE+CPPR+FLPALC IF+DE+APD++LEVTARAITYYLDVSAEC+RRIV VDGA+KALC RLVVV++ +RTS+DLAEQCVKVLEL+CTRE+G+++EAGGLNC++TFIR+ G +HKDTLHSAM+VV+RLC K+EP D +LE C++SLS LL+H+D+ V+D AL+CFA +ADRFTRRGVDPAPLAKHGLT+ELL ++ ++ + AC ST+ S S VS IVS+LS LCRGSP +THDLLRS LPD+IE+A+ GDERCVLDTMRLVDLLL+LLFEGR ALPKS++ S + LR+LDS+G++SHRQLIDCIRSKDTDALI+A+D+ F+VNFMDDVGQTLLNWASAFGT EMVEFLC+RGADVNRGQRSSSLHYAACFGRP VAK LLRHGANP+LRDEDGKTPLDKARER GH EVV ILQSPG+W+ V + ++E E KGDPE+APIY+KRL+PVFA TFQ +++PS++KA+L++++KMIH +++EV V L V++ A L+ EDDD+GHL ++D++ KG +IFL RLGV+ K+S +A D + + K ++++E P EDA ++ G PYHW DW ++RGRDCLY+WSD A+ELSNGSNGWFRF+LDGKL TMYSSGSPEGGS S+ESR+EFLEKLQRAR V S SQPILSA G L VGNW+L+C +E ++ + N+DGQQATILKEDLPGF+FESNRGTKH+FTAE SLG +F W+GK+G+K +S+ ++ +QK+ ++A +Y +FK + P G + TL I+ L ++ N + EN +D + +AL L ++ +E +S YE+ +SGLV AL LN ++ L + N K AF + D+S+ PA+ L+RKLI VLES E+LP+ Y++ G+ LQ+L +RLRF+LER + I+R+G+ LKMEPL TV +E YLLKMV K+WYD++RSSF FV+ +E Q+ F HQ DFD+NGIIYW+GTNA +W+NPA + +V+++SSEGR+LPYGRLEDI++RD++ +NCH+ND+K+AWF +D+G+ VIPSAYTLRHARGYGRSA+RNW+FQ SKD WT+L TH +D SL +PGST TW + +E +GW + RI+Q G NASGQT+YLSLSGFE+YG V E A EA+ ++QRR+ RSQ+L++M A+ G DWK + T T ++ W+DV+W
Sbjct: 1 MADVDPDTLLEWLQMGQGDERDMQLIALEQLCMLLLMSDNVDRCFETCPPRTFLPALCKIFLDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVVVELNNRTSRDLAEQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQDSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRMAAAGGTVSGPSSACKPGRSTTGAPSTTADSKLSNQVSTIVSLLSTLCRGSPVVTHDLLRSELPDSIESALQGDERCVLDTMRLVDLLLVLLFEGRKALPKSSAGSTGRIPGLRRLDSSGERSHRQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNRGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSEVVAILQSPGDWMCPVNKGDDKKKKDT-------------------------------NKDEEECNEP-----KGDPEMAPIYLKRLLPVFAQTFQQTMLPSIRKASLALIRKMIHFCSEALLKEVCDSDVGHNLPTILVEITATVLDQEDDDDGHLLALQIIRDLVDKGGDIFLDQLARLGVISKVSTLAGPSS--DDENEEESKPEKEDE---PQEDAKELQQGKPYHWRDWSIIRGRDCLYIWSDAAALELSNGSNGWFRFILDGKLATMYSSGSPEGGSDSSESRSEFLEKLQRARGQVKPSTSSQPILSAPGPTKLTVGNWSLTCLKEGEIAIHNSDGQQATILKEDLPGFVFESNRGTKHSFTAETSLGSEFVTGWTGKRGRKLKSKLEKTKQKVRTMARDLYDDHFKAVESMPRGVVVTLRNIATQLESSWELHTNRQCIESENTWRDLMKTALENLIVLLKDENTISPYEMCSSGLVQALLTVLNNSMDLDMKQDCSQLVERINVFKTAFSENEDDESR-------PAVALIRKLIAVLESIERLPLHLYDTPGSTYNLQILTRRLRFRLERAPGETALIDRTGRMLKMEPLATVESLEQYLLKMVAKQWYDFDRSSFVFVRKLREG--QNFIFRHQHDFDENGIIYWIGTNAKTAYEWVNPAAYGLVVVTSSEGRNLPYGRLEDILSRDNSALNCHSNDDKNAWFAIDLGLWVIPSAYTLRHARGYGRSALRNWVFQVSKDGQNWTSLYTHVDDCSLNEPGSTATWPLDPPK--DEKQGWRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTW 1314 HSP 2 Score: 771.926 bits (1992), Expect = 0.000e+0 Identity = 411/857 (47.96%), Postives = 553/857 (64.53%), Query Frame = 2
Query: 6173 RRMWNDELVLKCQHDALVPAFDPRPGRTNVQQTQDIEIPTAGTQKENKKEKVE----RKIRLFLRGTPYVGAKEIEIPLDNTESTIFSYVQSLVLYNSSSN-QSDRLRRVWDPNFVLVYKSTKESGEEDSTVLREEDVVKWGVSFVKDNIGTVDLPKSDLINYLQQNCNEEFLKKWRLVGTTRSCRKQRNCSSLSSAYKEFTSMKMXXXXXXXXXXXXXXXXXXXXLHRHLEG-------VTPIQQVLEVINSLHRISDEVDDTVSFDD--EKEVFYVPNDEFLCKKITNKLVQQIQDPLTLASGSLPLWCEYLVINYPTLFPFETRQMFFRATAFGFSRSIVWLQGIQDANTERSRVHLT-RRLDTQEFRIGRLKHERVTVPREDQLLETAIQLMNFHAERKSVLEIEFKDEEGTGLGPSLEFYALISLALQRNDLKLWVSMDDMQNDER--------IGPE--YSRHNNGLFPAPFPQDSPDMTRICQLFAFLGIFLAKCLQDNRLVDIPLSSPFFKMLCAG--KGKYAKL---SR-------TMSQNSDAIGQGQXXXXXXXXXXXXXXXXX----XKMDSHYFSDVITDHDFEQIHPNKAKFIKQLTLYVEKRQKILCDTELDESKRRTMLDELPFV--TESGVECKLEDLGLTFQYVPSSTVYGFDAVDLKPNGANETLTGENVEEYIELLKDFTMHKGIAMQLEAFRSGFNRVFPMERLHAFKPNEVRLMLCGEQAPQWTYEELMMYTEPKYGYHKDSPGFLRLINVLVAMDGQERKEFLQFATGCSSLPPGGISNLLPRLTVVKKESEGDGSYPSVNTCVHYLKLPEYSSEEILKEKLRAATREKGFHLN 8614
RR W+D+ VLK Q ALVPAFDPRPGRTNVQQT D+EIP GT E+VE ++ L L+ T +E+E+PL N STIF YVQ L+ + + N +SD+LRR+W+P + ++Y+ K+S +E + W + V+ +GT +LPK+DLI YLQ+N + FL+ W+L GT +S RK RNCS L +AYK+F + N+ + I + ++ VL+++ L+ ++ + +S +D E+ F P DEF KKIT K++QQI++PL LASG+LP WCE L P L PFETRQ++F TAFG SR+IVWLQ ++A ER+R + RR D EFR+GRLKHERV VPR + L+E A +M HA+RKSVLE+EF EEGTGLGP+LEFYAL++ QR DL W+ D+ +DE + P Y + + GLF APFPQDS ++ RI +LF FLGIFLAKC+QDNRLVD+P+S PFFK++C G K +KL SR T SQ+ + +G S + +E + +F+ ++T DFE ++P++A+F+K++ KR++IL + L E ++ T L EL + SG +EDLGL FQ+ PSS +YGF AVDLKP+G +E +T +N EEY++L+ DF MH GI Q+EAFR GFN+VFPME+L +F EV+++LCG Q+P W E+++ YTEPK GY +DSPGFLR + VL M ERK FLQF TGCS+LPPGG++NL PRLTVV+K D SYPSVNTCVHYLKLPEYSSEEI++E+L AAT EKGFHLN
Sbjct: 1758 RRTWDDDYVLKRQFSALVPAFDPRPGRTNVQQTTDLEIPPPGTPHSELLEEVECTPSPRLALTLKVTGLGTTREVELPLTNFRSTIFYYVQKLLQLSCNGNVKSDKLRRIWEPTYTIMYREMKDSDKEKEN----GKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEHGTKSGLNQGAISTLQSSDILNLTKEQPQAKAGNGQNSCGVEDVLQLLRILYIVASDPYSRISQEDGDEQLQFTFPPDEFTSKKITTKILQQIEEPLALASGALPDWCEQLTSKCPFLIPFETRQLYFTCTAFGASRAIVWLQNRREATVERTRTTSSVRRDDPGEFRVGRLKHERVKVPRGESLMEWAENVMQIHADRKSVLEVEFLGEEGTGLGPTLEFYALVAAEFQRTDLGAWLCDDNFPDDESRHVDLGGGLKPPGYYVQRSCGLFTAPFPQDSDELERITKLFHFLGIFLAKCIQDNRLVDLPISKPFFKLMCMGDIKSNMSKLIYESRGDRDLHCTESQSEASTEEGHDSLSVGSFEEDSKSEFILDPPKPKPPAWFNGILTWEDFELVNPHRARFLKEIKDLAIKRRQILSNKGLSEDEKNTKLQELVLKNPSGSGPPLSIEDLGLNFQFCPSSRIYGFTAVDLKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDATDASYPSVNTCVHYLKLPEYSSEEIMRERLLAATMEKGFHLN 2610 The following BLAST results are available for this feature:
BLAST of TCONS_00017366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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