TCONS_00017365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017365
Unique NameTCONS_00017365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1889

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017365 ID=TCONS_00017365|Name=TCONS_00017365|organism=Clytia hemisphaerica|type=transcript|length=1889bp
TTTTAttccaaaaacgaaagtgagaCTTTCTTGCCAAAATTTCAACTCAA
CTCAACTTGTCAAATTCCAAACGCAACTTAATTAAATCGGGAATCAATAG
aaaaaaagtaaCTTCAAAAGATGCAACCGTACGATGTACCTATCATTTCT
CATGATTTGCGTCAAGAAGAATTTGTCTTACAAATTGCTGATACATTGGA
ATACCTGGAAAATGTGACTGAAGACATTTTTAACAGGATTACCACAAGAG
TAACTGAGTGTCAACAACGTTTGGATATGGTCAATAAAAGAACTGATTCA
GCTCAAGCCAAAATTAATGCCTTGAAAGGCTCGAAGAAGGCCATACGTGT
GTTTTCAAGCTCCAAATACCCAGCCGAGGAGGTGTCTGAAGTTTACAAAT
CAATCTTTGATATTGAAAACAATCTAAAAGAAATACAAAGATCACAACTA
GAGATTTCTAGCAAACACAAAAGTGCAGATACTAATTCAATCAAGGACAA
ATTGCAATTTTACAGTGTCAATATTAAACAGAATAAAAAAGAGGATGGGG
AAAAGAAAGGAGAAGGGCTTGGTAAATTACCCAAAACAATTGATACAGTG
AGTTCTCTCTTGTTATTCAATACGGCGGAAAATCCATACAAGAAATATGT
CATCATGGATCCTCTTGCAGGGGCAGTCACGAAGACGCGAGCGAACATGG
AGGAGGAAGAGGAAGATATCGGGGCAGCACCCACCACCATTACCAACAGG
GAAGAACTGGAACGTGGTACTGCAGATAATTATTTCTACATGCCTGGCCT
TGGAAATGTTCCTGAAATCGACGTCCCAAATGACTTGCCGGATCTGCCTG
GCGTTGTTGATGATATTGCGTTCAGTGGTGACAGTGGCATGTCAATCGCT
CCTTCATTACCCATGAACATTCCCGATTTACCAACCATCGGTGAAGATGT
ACCCTCCTTACCCGACCCTTCCTCCACCGCACCTCCACCACCACCGCCAC
CCGGAGGAGACTCCTCAGccccaccacctccaccaccccCACCCCCAGCT
GCAGGAGCCCCACCACCACCACCTCCACCGCCTCCACCCCCACCACCGAC
AGAGACAGCCATGCCTCCACCTCCTCCCCCACCACCAATGCCAGACGAAG
AAGGTGGTAGCAAACCGGAGGGAAAACCGTCCGATGTTCCGGATGAAGTG
ACTGAAGATGATGGGCGGGCTGGTCTCATGGCCGCCATCCGTGGCGCGGG
TGGAAAGAAGGGtgcgaaattaaaaaatgcaaaagAACGCAAAAAGGaga
gaaaacaagaaaaagctGCAACTAGTTCTGGCGGGGGCGGAGGTGATTTG
ATGTCTGATCTCTTCAGCAAATTAACCATGCGTCGTAAAGGAATCTCGGG
TTCAAAAAAAGAAGGGCGTGAAGAGCGTTCGAACGCTGACCCCGCCCCAA
TGTCACCAATGGATAAAATTTCTTCCATGATACCACCGCCCTCGAAAGAT
CGGTCAGAATCACAAGACAGCGGGGACTGGGACTAATCTCTAACAAGTAA
CTATTTAGCtcttttatctattttttttctaaacgaTTTGATCGGCTTTT
CTTATCAAATGAGACATTTAAAAGATTACATCTTGTTTCACCTGAAAAAA
GGTTGGTATCTAACGATTGAATAGAACAATCGTCCTTGACCCATTCTTCG
TtcgaatttttattatttttttacgaTAGGGCCCAGTCTCAGTATAATAT
TTCTTAGAGCGTTAAAAGTGGGTTTCTCGTTAGATTCTGAATTGGTAAAA
CGTAATTTTTATCTCTATTGCACTACGCAGAATATAACTTCAACCAAACA
CTAATACTTGATGATTTTAATCCAATAATCAGACTACCT
Run BLAST on NCBI

transcript from alignment at sc0000266:201608..222227+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017365 ID=TCONS_00017365|Name=TCONS_00017365|organism=Clytia hemisphaerica|type=transcript|length=20620bp|location=Sequence derived from alignment at sc0000266:201608..222227+ (Clytia hemisphaerica)
TTTTAttccaaaaacgaaagtgagaCTTTCTTGCCAAAATTTCAACTCAA
CTCAACTTGTCAAATTCCAAACGCAACTTAATTAAATCGGGAATCAATAG
GTAAAGTTCTagagaatttttcttttatttagttTAGCTCTAAACCTCTC
TGCACCCCTTCCCACTCGAAAAATTGGCCATAATATCGTTTGTCCCTTCC
CAAGTCCAGTGGTGGTTTTGGTGTGTCCccttttttacaaagtaaagTAT
CTATGTCTATGACGGGAGCAAGGCAAGCAAGAAAATCTTTGggtattttt
gtctctttttggctgaaaactgcTACCATAAGTTGATCTAATGCTGACAT
CCAGGGCACATCTCATTTGGACACCCTTCTTTTTtgaagataggaataat
atagAGAAAGGTGGATGCTAAAGCAAAGTCCAAAGAATAGCTATAACTTC
AATCACAGcaattccgaccttcctattattcctatttTTAAAGAAGGGTA
TCGAAACTACATGaggatagaccttttcgcctttccgtctgccatcttga
attgtatgcaaaaatacaggaacgaaaatgccgtggttggatttagttga
aatgtatgcaaaacatatgcaagtttacacaaagattaaacagtatagac
ctaactcttcacacaaaaattacgggaaatgcatgtttggactttgtacc
ctttgctgcactcaagcacttaagccaaagtcccgcaaaggcgggacaaa
aatcagtttttttaagtttgcaaaaaaacNNNNNNNNNNNNNNNNNNNNN
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caggagaataatttgccgtcagccgaaaaaggattgttttttaacttcgc
gggtgatttttcagtttgagtttatgtctaatgttatgatCTTTtaaagt
gcttgttctaagagatgagtgaatgtaattttttttagttttcaagacaa
gcaaatttaatctttcttctgcaagattacactttaatataatgccaatt
atgcatgtaagtttttaattaATGGGTAATTCCATATCAAAtcatccaaa
attaaaaaaatcttgacacCACTACCTCTCAGATttccttcaaattttga
ccagtgataGTAATCCTTGAAAAATGacaatcctgaaaatttcagctCCT
AACTCAAAGCGGAACAGTTTTTATGCCCTTTTAAAATTTGGGCGGTTTAG
GGGCGTGGGCGCGCCCGGCCGACATTTAGAATACCCCTTTTTTATCATAA
TTCTTGTTCTAAACAAGCTATGGACTTGAAAATTTGCACAGGGAAGTATC
TTGACCCAAGGAATCCAAAAAAAGCATCAGAAACACACAAAAAAGCAGTG
GTTTCAAGTTACAGTCAAAATTTGAAATTTGGGCTGGGCGGTCTATTTGG
TCCAAAAAATCCATGTTGCAAAATTTTTTGGGAAAAAAAATTTTTTTCAA
TGTGTTCTACATTTAATAAACTTGAACTGGTCAAAAAATCAGCCAAAGTT
ATATCTTAGTTTAGTCAGAATCGTAAGTTGAAGTTTGCCCATTTTTTTAA
CAAAACATCAAGCTATCAGGACAGAGAAGACCAAAAACATGTGCTTTTGA
TTATGTGAATAATCTTTCACTCTCATTTCTCACTTCTTCTGCATGTCACA
TGGTGAGAGTGTGAATCTATGATGGAAACAGATCTTTAAAACATCATTTT
GAGCACAATTTCACCCACTTGAGGAATAGAATAAACTTTGACCTTTTGCT
ACTTAAATATGTTCCTATTTCCACATGGCTACTCACATTATGTACAAGTT
CACCAAAAAATTGTCTTTTACATATAAGACTTCAGTTTCTTCCACACATG
CATTGAGTAAAGTTGAATAATNACCCGGTCGACATTTAGAATACCCCTTT
TTTATCATAATTCCTGTTCTAAACAAGCTATGGActtgaaaatttgcaca
gggAAGTATTTTGACCCAAGGAATCCAAAAAAAGCATCAGAAACACACAA
AAAAGCAGTGTTTTTAAGTtacagtcaaaatttggaaatttgggCTGGGC
GGTCTATTTGGTCCAAAAAATCCATGTGGCAAAATTTTTTAGGANTAGTG
GTTTACAACAGTTAGATCAATTTTTATTAGAAGAAGACCAAGTTGAGATT
TATTTATGGAGAGCTGGACTGTTAGACAAGAGAAATGATGTGTTCAGTAT
ATGTAAACATCATGAAcagttttttggaaatgcaTTTGAAAGAAGAGAGA
AATATTGTTGTCAAGTTCTAACCAATCAtacaaagaaaacaattaaagGT
GAACAAATAATAACTTTAGAAATGGCAAagtatttgaaatcaaaaaactt
tgatGTGATACCAGGAACTAAGTTGTGTCGTCAATGTAAGAAGAAATATT
ATGAGATGGACAACAAAGATAGTGACAATATTCAACAAGCCACTACTGAT
CAAGAGTCTGATGAATGTGAAACACCAAAGAAAAAACTTAATAGTAGTCT
TCAGTCTATGGGAGTTTCGCCTATTGACCCTTTACATGCAGTTGCTCAAC
ATAGCAGAGTAAATCAAGCAAAAAATAAGTTGGACAGAGTAGTTGACAAC
TTGAGAAGTAACTTATGTGGTGCATATTCTATAGAGATTGACCAAATCAC
AAATCCTAATGAACAGAACAAGGATGAAAAGGATGAAGTTAAAGTTAAAG
CTGATGAATTGGACAGACTTCATTACCtcatgaaagaaaaattacaactt
TCTACATACCCAGAAAAAGTTCAAATATTGACTTTGGTTCCTGATAAATG
GTCCAGAAAACATTGTGCAGAGTATTTTGGTGTTTCAGAATACCTAATTA
GAAAAGCAAGAGAGCTAAAGAAAACCAGAGGTATATTGAGTAAGCCTGAT
CAAAAACATGGCAAAACATTATCCAATGAAACTTTAAACTTAGTAAGGCG
TTTTTATGAAGATGACGAGTACAGCCGACAAATGCCAGGCAAAAAGGACT
GTGTGAGTGTTGGTAAAGGAGAGTATAAACAAAAGAGATTGATTTTATGC
AATTTGAAGGAACTTCATGCTGcgttcaaagaaaaaaatccgAACATAGG
AATTGGGTTTTCAAAGTTCTGTAGCTTGAGACCAAAATGGTGTGTCATAG
CTGGTGCTAAGGGAACACACTCGGTTTGTGTGTGTAGTGCACACCAAAAT
GCTGTGCTTCTGGTTGAAGCAATCGATTGGAACCTGACTTACAAAGATTT
GATGAGTAAAATCGTATGTAGTGTCGAGGAGAAAGAATGCATGATGCATC
GATGCGAGTCATGCCCAGGAACAGATGCTCTGTTGAAATTTTTGGATGAT
GAATTTTTGGATAAAGACAAAGAAGAGGAATTCCATTATTCCCAATGGGA
TACAACTGATCGAGCAACTTTGTCAActtatctatattataatacgctta
aatcggaactctcccattctcgcatgaggctttttcgctagcgattttta
aatacacggcaatttttttcgcgccttttNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAAAAA
GGCACTCTTTATATTCCACCGTAAAGCACTGTGGTCTTTGGAGTGATCGG
TGTTGCCAAGTACctctaatactgaatttgaatttctatttgtttagttt
ttatcttcatccttgcgtgaggaaaataatagtctttcctctcccaaaaa
cccaaaaaaaagcacatttaaagtatgaccgatttcttgcgagaaatttt
taactcaattttcaccaatatttgcatgagcattatttttagcgagtcaa
gaacattattgtttgaaggttttcaacaaaagaaattatgacaaatatac
aatttaataaggagaagaaaaatcaaaattcaactaaaaatactttcacc
atattttttaatgtgcattaattttagtgtcccctcaaaaattttaaaca
tcaatctttacgaaaaaggcctaaatttaagaacatttcttctcgcaaaa
taagtacatttgtatacaaatccctacaagtttctgaaaaatagaaaagc
gagcgaagcgagcgtattaaaaggagtaagaagtcgtctcggacgacgcc
gggacggctagtgAGGAATACAAGGAGACCCTAATCAATGTTATTGATGA
GTTGACTAAACACTCCTATCTTGCAAAATGCCAGGCAAAGTTccttaaaa
tgaaaaaggaGGATTTATTACCCAATGAAGGAATAGTTTTGGGCGACTTT
GCAGAAAACTACCAATTTTTAATCCAGGATGAAATTCAGAGCTACCACTG
GAGCAAAGAATATTGTACCTTGCATCCATTGGTGCTATATTACAAAGCTG
CAGATGGTAGCCTACAGCATGACTCTTTTTGTTGTATTTCTGATGATAAT
ACCCACGACACtagttttgtttacaaacttcAATCAATTTTCATTGATAA
TGTAAAGGTGACAATCCTGAAAACAAAGCCAAGTAAAACCATCCTAATCT
CaagaaattatattatttttctgATGGTTGTGGTGGTCaatataaaaatt
acaaaaatttcatgaatttgTGCATGCATGAACATGACTTTGATATTCAG
GCTGAGTGGGTATTTTTTGCGACAAGTCATGGGAAGTCACCATGTGATGG
TATAGGGGGTGCTGTTAAAAGACATGCTGCAAAGCGAAGTCTTCAACGGC
CATTAAAAGAGCAAATTCTTAATTATAAAACAATGCTCGAACTTTGTACA
CAAGAAATAAcatcaataactttttttgaaattagtaAAGAAAGTATGGT
CGATGTCAGAGAAGCTCTTGAGCGGAGGTATATAAAAGGAGATACTGTCC
CTGGGACAAGGGCAAGTCATCACTTTGTTCCATTGTCTTCAGCAAGAGTT
GGTCATAAATTGACAAGTGAGGATGAGTTGTATGTTGATGTCCATGACTT
CAACATGCCTACCATTTTTAAGACATCCGACTTGACTCCCTTAACCTACG
TAACTTGTAAATATAACTCCTTTTGGTGGATAGGTCTCATAAAAAAGATC
GACCAAAAAGAAGGTGATGTGCAAGTTGATTTTATGCATCCACATGGACc
tagaaaaacttttaaatggCCAGACCATGTTAATACTTGTTTTGTACCAT
TAAAAAACATCATTCTTCAAATAGAACCACCTACAACTGCAACTGGTCGG
ACATATATGATAGCAAAAAGTGATTATGAAAAAACGGTATCGAAGTTTTC
TAGCATTTGTTGATTACATGTAACTAGCTCACATTTTCACGCTATTTCTT
AGATTATTAGCATATTTATTGCCTATGTAATAACTTTAAAGTATTTCAAA
ACTTCTAAACTTAAAAAACTTACTTCATTCATGACCAATAATGGCTCAAA
ATAATTGTTGCTGGCCTAATACTCCCTGGTAGCCCAAATAATAGGCAAAA
AATAGGCAAACTTCAACTTATGATTCTGACTAAACTAAGATAGAActttg
gctgattttttgaccAGTTACAGNTTATGATTCTGACTAAACTAAGATAG
AACTTTGCCTGATTTTTTGACCAGTTACAGTTTATTATATGTAGaacaca
ttgaaaaaaaaatttttcctaaaGAATTTTGCCACATGGATTTTTTGGAC
CAAATAGACCACCCAGcccaaatttccaaattttgactgtaACTTAAAAA
CACTGCTTTTTTGTGTGTTTCTGATGCTTTGTTTGGATTCCTTGGGTCAA
AATACTccctgtgcaaattttcaagTCCATAGCTTGCTTAGAACAGGAAT
TATGATAAAAAAGGGTATTCTAAATGTCGGCCGGGCGCGCCCACGCCCCT
AAACCGCCCAAATTTTAAAATGGCATAAAAACTGTTCCGCTTAGAGTTAg
gagctgaaattttcaggattgtCATTTTTCAAGGATTACtatcactggtc
aaaatttgaaggaaATCTGAGAGGTAGTGGTGTCAAGCCTCTGGATGATT
TGACATGGAATTACcctaatactttctttttgcatatgttttgcatactt
tctaagcagtcaggacctcatttcactttatcgatattacgcaaacggca
gtgtgcgctaaatagtctaggtttcgctttcgatttcaagcaaaggtctt
agcaacagggcgcgcgtacatagcaacggggctgggtagaaaaatctaaa
catagaattcaaaaataataccgatcatcgtatagagcactaaaaaatat
atgtttagtttgttctaccttggattataactgaaaatatcttcaaaaaa
accttcgtccgctatcagctgcgcggtaatctttgcccgcttcaattctt
agataatgaatgaGAGAGGTgtgcttagctaagccgtgctcgcgggcgat
aaatttatgtttacttatcttgtatattttagtggtatttatccaatgaa
aaggatgttgacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtatccaatgaaaaggatgttgac
aaaatatgcacggcattgattatgacatcattaaatatgtcaatgtcgat
tcaacgcccgttaataataataattcgtAGATACTTTTTATcctgaaatt
tagaaatacgagaaaaaaaagatcaaatttaatatttgtttcctatctag
attatattagcgttagaatacggtaaattttcacgaaaaatatttcgcNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACCGGTTCacaacgt
ggataaaaaacgtacggaatgaaacctgacaaaaggttttcaaccagatt
tattcagataaagctataagaggttcattacttgtgggtcttaaaaccta
cataagcaaaaacgaaagttgttgggaaggaaagagtagatgcaagacag
aaggtttggttgtgttgatcaggtatgtttttattctatctgaagtaatg
ttaaaaaagaccaaagaggtcctgactgtttctaagggaatttcaccacg
gcaatttggccaccataatttttgcatacaattcaatatggcggatggaa
aggcgaaaaggtctattcaacaTCAGACcaaccgtcaactgctctaactt
gggactatctgacaaaacatgacagcaattcggccaccatttcaccgaac
ttccaaagtcatttgatttgagtcaatgaacagcgtattaaaaaaataca
tgatttctctttcgcaccgagtaggcttttaaatcgaaatatgacaGTAG
TAGTAAAAGTATAAATCCGTAGTAAAACACATGCAAGTAAGTGCCTGGCA
CCTGCTGGaacaaagaagaacaaattagtagCAAAATGATGGAGCGTTTG
CAGGCATACGTCACTCGCGCGGctagttacacactcgttatttgttaata
gaccttttcgcatttccatccgccatattgaatttaatttacaagctttt
tgatattgaattgacaagAATGCTGAGcaaaattggtcagaaagaggaaa
agaaaaacatttttgcttatatcagcacaataaaacaataggtagacact
gtcctgatatgacaaatgtgtctgatatgaaacaggaacacttatgtaaa
aataaaacctttaattaaaTAGTTTTTAAACCAGTCTAAGTTGGTACCGT
GAAgtctggtaacttgcatcagtggagggaaacttgcatataGCCATTAA
ATGactgaccaaccaaagcagcaaaatttcaaaacaaatgaactacgcag
cttcgctcgctgctctactctaccattttgttttgatttaactttgtatt
ttaatgaccagtcgggtcattcatttgagggctatgcaagtttccctcca
ctgatgcaagttacccgacttcacagtacCTGTTATCTCGTATCGTTCAA
GTTTTTAGATTATATGTCATAATTATATTATAAActtaaaattcttttga
aaggtcaatgaaaatccaatggtgaatttatttttttcaaaggaaTCTGA
AATTCCATTGATTAATTCTAGTAAGGCGTGTTCAGTcaaatgtttttgtt
gaaagccaAATTGTTTTTAATAAAGAATTTTATGCTGCTGGAGATAGTTC
ATAAAAGCCTATTGTATTGTACATAATTTTTTCAAGGAGTTTTGAAAAGA
ATGGTAAAACGGAAATTGGTCTATAATTTCCCAGGTCACTTTTTTCTCCT
GTTTCAAAAACGTGTGACTTTTGCAATTTTCAGTTCATTCGAAAAAATGC
CTTGTTGTAAGGAGAGATAAAAAATATGATGAAGAAAAGGTTTGATAATA
ATATCATATGTTTTGAGAATAACATTTTAACCTCCATTTGaacagaaaaa
ttttatttagagtcaaaatctttccaaaatttaatttgatttatagaagt
gtatttctcaggtctattgacctctatgaaacaatgaGGTTGATTTCGAA
GAAAGAGTTTCTGACATAGGGAAGATTTATCATAGACACTAAGATCTTGA
GGCTGGGTAGGTTCATGACTTGTAAACGTTCTTCATATGAATGGTTTCTA
TAACCACCGACAAGTCTTGTGGCCCTACGTTGGACACTTTTCACTTTGGT
GTAGATGTGCTCTTCGAAATTCAATTCACTATCAATAATCACTCCAAGAT
CCTTCTCTTGATCAACTTGTTCTAGAACAGAGCCAGTGATCTCGTAAGGA
TGTGCATGTTGAATGTTCCAGAATTTCCCTAGTGTCAACATGTGGCACTT
GTCAGGATGGAATTTCAACAACCAGTCATCAGACCACTTTTCCATTGCCT
TGATATCGTGCTGAAGTCTAATTGCATCTTCAGcgttatttatttcttca
acCAGCTTTGTGTCATCGGCAAAGAGGAACATTTCTGAGTTGGTAACTTC
AGCTANACAAAAATGCTTTCATCTAACCAAGTACCCTTCCTCTGATACCA
TACGCTTCGAGTTTTCTTAGTAATCTGCAATGTGGAACGGTGTCAAATGC
CTTTGCGAAGTCGAAATAGATTACGTCAGCAACCTTATCATTGGATATCG
AGTCCGCACATTTGTCTAAGTAGTGAAGTAGTTGTGACACCCATGAACCC
ACGTTGTTTGGTTGATAGCAATTTCTCATCCGTGAGGTGTTCCattattt
gtttctttaggATTCTTTTCATTACTCTACACGCAACTGATGTTAAACTA
ACGTGCCTGTAATTTTCTGCAAggttcttttttcctttcttttagaATGG
GGACACGTGTGCAGTCTTCCAATCATCAGGTAGTTTACTTTCTGCAAAGG
ACTTGGCCATGATAGTATGTAAAAGACCGGCTATGTAAAAGGCCAGCTTT
TTCAGCATGACTGGGTGAATCTCATCAGGTCCTAGCAATTTATTAGGATT
CAAACCTTTTAGTTGCTTTCTGACCATGTCGATTGTTAGATCGAATGCTA
CATTTGTGTCTGTTCGTGATGGAAACTCATTATGTAGTGATCCAGCAGGT
TCATTcgtaaaaacactgcaaaactgATTCTGTAGGATGTCAGCTTTATC
CCCATCAGTAAAACGAAGTGATGATTTATGACCACGAATTCGTTCTTCta
gtcttcttctttctcgtctgATCTTTCCTGTAACCTTGTTTCTCGCAGTA
GCGTAAATAGCTCTATTTCTCTGTTCCGAAGTTGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAGGTACCCTGCTTCTATAAGATATAATGTAA
AGGTCTTCAAAAATGTCACACACTCAATACTGAATTTTTGAAAGAGTTCT
CAAGATGTCCTTTCATTGCTTCAAAATTTGCCTTATTGTAGTTGTAGTTT
TCAATAATGCATTCTGTTTCAAGGTAACATTCGAACGTAAATGATAGAAC
ACTGTGATCACTTTTATGAAGTGGTGAAAGAAAGGATATGTTGCTAACCT
GGCTTTCTTCATTCGTCAGAATCAGGTCAATAAGTGATGGCGTATCGGTA
CCTCTAGCTCTCGTTGGTTCATTGACGTGTTGGTAAAAGAAGGAGTCTCT
TAAAGCTTCGAGAAATTGTTCGTCTTCCTTCATGTCATCGTGAGGACTTG
ACCAATTTTCCCAATTGATATCTTTATAGTTGAAGTCTCCGACGATACAC
TTATAATTCGATTTTAAACGACAAGCGAGTATGAAGgacaaaaagtgacg
aaaaataCTCTTTATTTTTAAGCTAACTCTAGTGCAAAGATATTATGAAT
AATTTTaatgtgaaattttaaaatatagtatttactggtttttaagatat
gaccTGCATTAGGAAAAATTTAAAAGCATGTCCTTGTAGTCCTAAGGAAA
AAACCCAAAATCGTTCTTATGTTAAAAATACCGATTCCTTGTTACAAGTC
AAGAACATCTCGACTATGGAAAACATACAAAAAAGATTTGGAGTTTTTGC
TTACAGCCTTTACAGCTTGTAAATATCTCGAACTATCTGATTATCCtttt
aactttgaaattttgaaataatattaccaaaattgtatcttttcagaaaa
aaagtaaCTTCAAAAGATGCAACCGTACGATGTACCTATCATTTCTCATG
ATTTGCGTCAAGAAGAATTTGTCTTACAAATTGCTGATACATTGGAATAC
CTGGAAAATGTGACTGAAGACATTTTTAACAGGATTACCACAAGAGTAAC
TGAGTGTCAACAACGTTTGGATATGGTCAATAAAAGAACTGATTCAGCTC
AAGCCAAAATTAATGCCTTGAAAGGCTCGAAGAAGGCCATACGTGTGTTT
TCAAGCTCCAAATACCCAGCCGAGGAGGTGTCTGAAGTTTACAAATCAAT
CTTTGATATTGAAAACAATCTAAAAGAAATACAAAGATCACAACTAGAGA
TTTCTAGCAAACACAAAAGTGCAGATACTAATTCAATCAAGGACAAATTG
CAATTTTACAGTGTCAATATTAAACAGAATAAAAAAGAGGATGGGGAAAA
GAAAGGAGAAGGGCTTGGTAAATTACCCAAAACAATTGATACAGTGAGTT
CTCTCTTGTTATTCAATACGGCGGAAAATCCATACAAGAAATATGTCATC
ATGGATCCTCTTGCAGGTTAGTGCTTTTTCTATATGTATATACTTTCAAA
GTAATTTTTCTTACCATCATATCATTAAAGGGAGGAGAGAGCGAACTGAA
GTAGTAAATTATAACTTGAGTATGACTTTTTCGTGTGTGCATGTTtcgtt
cattcaatttttgacgacatttttggtcaaaaaattgaatttcgatggca
atattcaattttcaattttcgagttaaaaaatgaaaattgaattttgatt
gcaaatttcaatttttgttttgtttattgccagaaatgaactgaaatttc
cagcatcatttttgattttctaatataaacttcttgcattggaaattgaa
aataatattttcaaatactgaaaattgtgtaatgaaaaattgaattgaca
aAACAAAACTAATTTTATCACGTTTGCTTTTCCATGAAATCAGATTCTGA
AAACAAGCAGTGTTTCATCGGTGTaccaaaaaagaacaaaaaagtagaat
gttttattgtttgttGATGTCTAGTTCCCAGGTCTTTTGCAGTGTAATTT
CCTTCTGGGTAAATACACTatgacataaatttcacgtGGAAAAACTTCCT
TTACGTAATATACACTCTTCGGATACTTTTTGGTCTTTGACTGCAAACAT
AGTCCTGCAGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNgggctcccccaggggctggcgtgacgcgtgaatga
cccttttttctgtcgtgaatacgtgaattggactttttcaacgCGTGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
attttcttgctcgcttcgctcgcataatcCTTGATATCATATTGACCTAT
TGCCAttgtaaagttattcaaaataatcaaaaattgaaacagaaacaaat
attttctccttatttttctaagggcgcattttgtgatgcaaatattgCAT
CCAGCGAAAGTGTTTTgagccaaaacaaaaaagtctaaatgagAAAATTA
TCTTCGTCGGCGCTAATGATGGTCGTCTTTCTGTAATCGCTTATATATTG
TTACTAAATGCAGTACACATAATGATACCGCATGAACTTGGAGACAGTGA
AGGGTATTTGATTATTCGATAATTTACAAAAGTAGGTAGATAGTTCTAAA
ACATTTTATATGATTGCATCATCGaacattcagaaaaaaaactcttgCGA
CGCCGCACCGTGTAAGGTAGGTACGTcactcgccgtaccagatttgtacc
agtaaatggtcagtgttgaaaataatcaaagattctgaatgaattgtatg
accaaacaaggcatattaGGGTAACAATAGTGTGTTAAGGCCGTTTTCTC
AGCAATGAAAGAgtgaaagttgtcaaaaaattttcgcgctcgcttcgctc
gctttttccTTTCCACAGCTTTTCTTCAATGAGAGACAGGGGGTCAAACT
TTGGAATTTGCGTCCTCTGGTTGTACCACCTCTTTCAAGCTCCCGATTTT
CCAGACCATGAATTTGGGCCAAACCTcgatttaaatttattctcaaaata
aaacatatttAGGGCCTGCgaggaagaaaatttggggGGAAACCTTAAAG
CTAAGGCTTAACTTTGCACCTTACCTcccttaaaaagcaaattcaggCAA
GGTTTATACCACCGTACGCCAGAGAGGTActtttttgtaactttggcgTG
ATAGACGTGATAGACAGACCTTAAACATTGCCCTATGAAACCTCCAATAA
TTGTAAGAGGTCTTAAAAGGTAGACGctgtcgagaataaggtcaaaaaac
tgcagaaaactttaTGTTGGTCATAAAAAGgtaaaatttagcccaataag
gtcacaatcgtttaacaaaataattaaaagcaaaatcagcgcgtgaacgt
gaaaatggtttttttcgcgcgtgaaNTGTAGAGAAAAATTAGACTAACAA
AGAAGAGACTGAATAAAGCTATTGTTTCCTTTGTCTTCTTTGTAACTGgt
tgtaaatcattttcaactttcaatttttttatccgagacgttttttttta
caaattggtttggtttgtcaaattcaatttttcacgacacaatttcagta
tttgaaaatattattttcaattttcaatgcaagaagtttatattagaaaa
tcaaagatgaaactggaaatttcagttcatttctggcaaaaatgaaaata
aaattgaaactttcaatcaaaattcaatttccaattttttaactcgaaaa
ttgaaaattgaatattatcatcgaaattcaattttttgaccaaaaatgtc
gtcaaaaattgattgaacggAACATGCATGCATGCTTTTTGATGATGTAT
TTATTATATGCGTTCTTGGTTCTTGTATATTTCAATCAATTTGAAGAtct
tttttaaagcaaagatttcaaaagatttcagaaaatttggaatattgaaa
attgaaaattgaaaattgaaagaaggaaaagtagaaaattggAAGAAGGA
TAAATGTTTTGACAAAAGAATGCTCCTTGATTTAAATTCCCTTAACCTAC
TTCTATTCTGACACTAAATAGGGGCAGTCACGAAGACGCGAGCGAACATG
GAGGAGGAAGAGGAAGATATCGGGGCAGCACCCACCACCATTACCAACAG
GGAAGAACTGGAACGTGGTACTGCAGATAATTATTTCTACATGCCTGGCC
TTGGAAATGTTCCTGAAATCGACGTCCCAAATGACTTGCCGGATCTGCCT
GGCGTTGTTGATGATATTGCGTTCAGgtaatttcaataaaagcaatccca
atttgaaataaagaagaaaacttTGGAACTCGTCATAATGGTAACACTGC
TGTCTTTACTTAGTAGCCTcattactttttgagtttttttcactCGTGTC
AAAATAAGGTGATGGATTTGCTCGAGCTGCTCGACGTCTGCTTATAATTT
AACATTAATTTCGTTGGCAATAATGAACAATACTGGACAGATGTTAATTG
AGTGACATATTCTTTGATTCCAACATCATTGTCTTTCTCTTTTATTAACA
GTGGTGACAGTGGCATGTCAATCGCTCCTTCATTACCCATGAACATTCCC
GATTTACCAACCATCGGTGAAGATGTACCCTCCTTACCCGACCCTTCCTC
CACCGCACCTCCACCACCACCGCCACCCGGAGGAGACTCCTCAGccccac
cacctccaccaccccCACCCCCAGCTGCAGGAGCCCCACCACCACCACCT
CCACCGCCTCCACCCCCACCACCGACAGAGACAGCCATGCCTCCACCTCC
TCCCCCACCACCAATGCCAGACGAAGAAGGTATGAAATGATTTTGAATAC
TTTGAATGTTTAAACGGCTTTTAaggatttgagattttttatgAATCTTG
TGCTCCTTCGGACCTGTTTGAATACTGCTTGTTGGGTCAGGTCAAACctg
ttttatcttttttcaatgTCGAGATTTCTACATTTGCTCACAAAATGACT
TGTTTGTCTtgttgtcttattttttactgatATTTGGATAAACAAAATAC
TCAATAAAACTCAAGACAATTTTTTCAGTATATACGAGGATATTATGCCA
TGATCATAAGGAAATCTTTCTTCAAGTTAACAGTGTAACTGGTTCTTCTT
GGTAGATTAAACGTGTGATTTTCCTTCTTTTCAGGTGGTAGCAAACCGGA
GGGAAAACCGTCCGATGTTCCGGATGAAGTGACTGAAGATGATGGGCGGG
CTGGTCTCATGGCCGCCATCCGTGGCGCGGGTGGAAAGAAGGGtgcgaaa
ttaaaaaatgcaaaagAACGCAAAAAGGagagaaaacaagaaaaagctGC
AACTAGTTCTGGCGGGGGCGGAGGTGATTTGATGTCTGATCTCTTCAGCA
AATTAACCATGCGTCGTAAAGGAATCTCGGGTTCAAAAAAAGAAGGGCGT
GAAGAGCGTTCGAACGCTGACCCCGCCCCAATGTCACCAATGGATAAAAT
TTCTTCCATGATACCACCGCCCTCGAAAGATCGGTCAGAATCACAAGACA
GCGGGGACTGGGACTAATCTCTAACAAGTAACTATTTAGCtcttttatct
attttttttctaaacgaTTTGATCGGCTTTTCTTATCAAATGAGACATTT
AAAAGATTACATCTTGTTTCACCTGAAAAAAGGTTGGTATCTAACGATTG
AATAGAACAATCGTCCTTGACCCATTCTTCGTtcgaatttttattatttt
tttacgaTAGGGCCCAGTCTCAGTATAATATTTCTTAGAGCGTTAAAAGT
GGGTTTCTCGTTAGATTCTGAATTGGTAAAACGTAATTTTTATCTCTATT
GCACTACGCAGAATATAACTTCAACCAAACACTAATACTTGATGATTTTA
ATCCAATAATCAGACTACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009721XLOC_009721Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017365-exon-sc0000266-1491911889:201608..201707TCONS_00017365-exon-sc0000266-1491911889:201608..201707Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1510915933:201608..201707TCONS_00017365-exon-sc0000266-1510915933:201608..201707Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1575043694:201608..201707TCONS_00017365-exon-sc0000266-1575043694:201608..201707Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1491911889:216754..217323TCONS_00017365-exon-sc0000266-1491911889:216754..217323Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1510915933:216754..217323TCONS_00017365-exon-sc0000266-1510915933:216754..217323Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1575043694:216754..217323TCONS_00017365-exon-sc0000266-1575043694:216754..217323Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1491911889:220379..220583TCONS_00017365-exon-sc0000266-1491911889:220379..220583Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1510915933:220379..220583TCONS_00017365-exon-sc0000266-1510915933:220379..220583Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1575043694:220379..220583TCONS_00017365-exon-sc0000266-1575043694:220379..220583Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1491911889:220859..221136TCONS_00017365-exon-sc0000266-1491911889:220859..221136Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1510915933:220859..221136TCONS_00017365-exon-sc0000266-1510915933:220859..221136Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1575043694:220859..221136TCONS_00017365-exon-sc0000266-1575043694:220859..221136Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1491911889:221492..222227TCONS_00017365-exon-sc0000266-1491911889:221492..222227Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1510915933:221492..222227TCONS_00017365-exon-sc0000266-1510915933:221492..222227Clytia hemisphaericaexon
TCONS_00017365-exon-sc0000266-1575043694:221492..222227TCONS_00017365-exon-sc0000266-1575043694:221492..222227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:201608..222227 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.8829	14.5362	12.2314	12.2721	15.1437	11.2321	17.3613	20.5467	14.7692	19.5902	19.5585	9.45928	15.2159	12.0953	14.9005	18.4337	17.9873	16.3522	8.87019	9.60772	14.7557	15.5243	16.1699	16.7798	29.0743	27.5588	12.9357	12.5258	29.2917	25.1284
Blast
[Close]
BLAST of TCONS_00017365 vs. Swiss-Prot (Human)
Match: WASH2 (WAS protein family homolog 2 OS=Homo sapiens GN=WASH2P PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 1.380e-71
Identity = 137/277 (49.46%), Postives = 186/277 (67.15%), Query Frame = 1 
Query:  124 QPYDVPIISHDLRQEEFVLQIADTLEYLENVTEDIFNRITTRVTECQQRLDMVNKRTDSAQAKINALKGSKKAIRVFSSSKYPAEEVSEVYKSIFDIENNLKEIQRSQLEISSKHKSADTNSIKDKLQFYSVNIKQNXXXXXXXXXXXXXXXXXTIDTVSSLLLFNTAENPYKKYVIMDPLAGAVTKTRANM-EEEEEDIGAAPTTITNREELERGTADNYFYMPGLGNVPEIDVPNDLPDLPGVVDDIAFSGDSGMSIAPSLPMNIPDLPTIGEDV 951
            Q Y VP+I  DLR+EE V Q+AD L+YL+ V+ DIF+RI+ +V + + ++  + ++   AQAKI  +KGSKKAI+VFSS+KYPA E  + Y SIF    +    +R +  I SKH+  D  ++++KL+ + V +   K E  +   EGLG LP  I +VSSLLLFNT EN YKKYV +DPLAGAVTKT   +  E EE +  AP +I+ RE+LE+   +NYFY+P LG VPEIDVP+ LPDLPG+ +D+ +  D G  IAPS P  IP+LPT   +V
Sbjct:   13 QTYAVPLIQPDLRREEAVQQMADALQYLQKVSGDIFSRISQQVEQSRSQVQAIGEKVSLAQAKIEKIKGSKKAIKVFSSAKYPAPERLQEYGSIFTGAQDPGLQRRPRHRIQSKHRPLDERALQEKLKDFPVCVS-TKPEPEDDAEEGLGGLPSNISSVSSLLLFNTTENLYKKYVFLDPLAGAVTKTHVMLGAETEEKLFDAPLSISKREQLEQQVPENYFYVPDLGQVPEIDVPSYLPDLPGIANDLMYIADLGPGIAPSAPGTIPELPTFHTEV 288
The following BLAST results are available for this feature:
BLAST of TCONS_00017365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WASH21.380e-7149.46WAS protein family homolog 2 OS=Homo sapiens GN=WA... [more]
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