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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017357 ID=TCONS_00017357|Name=TCONS_00017357|organism=Clytia hemisphaerica|type=transcript|length=1573bpRun BLAST on NCBI protein sequence of TCONS_00017357-protein >TCONS_00017357-protein ID=TCONS_00017357-protein|Name=TCONS_00017357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp MLSKRSHLLKSFCSHLAKQYQFSQRSIVSFGTGEDVALITAPFSGGQPRARun BLAST on NCBI transcript from alignment at sc0000266:68717..84089+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017357 ID=TCONS_00017357|Name=TCONS_00017357|organism=Clytia hemisphaerica|type=transcript|length=15373bp|location=Sequence derived from alignment at sc0000266:68717..84089+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000266:68717..84089+ >TCONS_00017357 ID=TCONS_00017357|Name=TCONS_00017357|organism=Clytia hemisphaerica|type=CDS|length=12960bp|location=Sequence derived from alignment at sc0000266:68717..84089+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017357 vs. Swiss-Prot (Human)
Match: ARGI1 (Arginase-1 OS=Homo sapiens GN=ARG1 PE=1 SV=2) HSP 1 Score: 297.745 bits (761), Expect = 6.938e-96 Identity = 152/309 (49.19%), Postives = 199/309 (64.40%), Query Frame = 3
Query: 333 VALITAPFSGGQPRAGVEHGPKALRNSGLVDCIEALGRKVHDHGDVSVEKNSCENPTLTNYRGHMLKNVEVCGKVSENIANEVEKAVKNEHIALTVGGDHSIATGTIMGHQRARGNICLLWIDAHNDINTYETSGSKNMHGMCLSHLVKGLP-NVQDMPGYEWAQPCLTPFDIAYIGLRDTDPGEYSITHELGILTFSMHEVDRYGIATVVERAIESINPRLDRPIHLSYDIDSLDPIHSPSTGTAVYGGLTLREGLYIGEHINKTGLLSALDIVEVNPYLGTSEEDAHKTVQTALRITEACLGKHRSG 1256
+ +I APFS GQPR GVE GP LR +GL++ ++ V D+GD+ ++P ++KN GK SE +A +V + KN I+L +GGDHS+A G+I GH R ++ ++W+DAH DINT T+ S N+HG +S L+K L + D+PG+ W PC++ DI YIGLRD DPGE+ I LGI FSM EVDR GI V+E + + R RPIHLS+D+D LDP +P+TGT V GGLT REGLYI E I KTGLLS LDI+EVNP LG + E+ +TV TA+ IT AC G R G
Sbjct: 8 IGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPF------QIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREG 310 The following BLAST results are available for this feature:
BLAST of TCONS_00017357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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