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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017331 ID=TCONS_00017331|Name=TCONS_00017331|organism=Clytia hemisphaerica|type=transcript|length=1322bp
GTTCTGTTAAGTTATTCATTTTGTGTTTATTCCATATTCATATTATAAAT
CAGGGGTTGTTACAAGTAAGTTCTTCGTTTACCCTTTGGAGCTTTCAATG
GTGGATTCTTAAGTGCAATCTTTGTTTTCGAGTTTGTATTGATAGCAAGC
TGACCCATCTTTTTGTCTTTCTCTCTTTGTTGTTCTTCTTCCAAAAACTC
ATCATAACAATCCTGTCTCACGAATAGATCATTGTATGTTTGAACTTGTT
GTGTTTTCATAGCTTCCTTAAGTGCGTGGAGAACAAGCAGGTTACAATGT
TCTGTCTGGCAAACTGTTTTCGAATAATCAATCAGATCAATTAAAGTTGA
TCCGTCACCGTAATCTTCTAACGTTTTCAAGATCATGCGTACATTTCGAC
GGCTTCGCGTGCGGAGACGTACCGTTCCAGGACCGTAATATCTTTCATCG
AATATTGAAGATGTATTAGCAGCGTTTAAAATTTGGTTTTGACTTCTCGG
GTTGGGCTGAGTAGTGCCGTTACGTCGGatacttttttgtttcttgttaA
ACTCTTTAAGAATTTTCTccactttttgtttttgttctttaGTTAGTATA
TTACTTTCTTTCCGTTTAGTTGTCTTCTTTTTACGGCAGGATGTTGTAAA
TGTTTTCAAGCGGTTGATACTTTTACCGGAGATTGTTTTTAACGAGGATG
TGGAATGTGCCGAAGTTGATTGGTCTGGTTGGTCATCTTCTTCAATCCAA
GCCGTCTTAAGTGTTTTGCGTCGTTTAGTAGGTGTTTCTGACGCACTTGA
TAGAGATTGCTTAAGTTTGAGAGAAGTTGTAGACTGGAAACGTGAAGATG
AAGAACGGGCTAGAGGTCCGGGACTAGTTATTGTTGTCGAGCTGGAAGAT
CGTGGTTGTTTACAGCTTGAGGTAGACGATACTTGTTTGATTGATGTTGA
TGATGTTGCATTTTCACCTAATTTGCCATATCCTGTTTTACCGGTATCTG
TTGGCAGGTCTCTAAGTGAATGAAgtgttctttttctttctttaggtGGT
GAAATGTAAGATGCGATACTGACTGTGCTTAAGGAGACTAATTCTTTAGA
TGAAGAAGCTCGTTCAAGTTTGTTTCTGTGACTTCGAAGATTCATAGTTt
tggtgttgttgttgttgatgttgtGTTGTATTTTTGGTTGGTTTTTATCA
GCATTATTTGTTGGTTGGAAGAAAATAAGTTGTTGAGTGGTTTTTTGATG
TTGTTGTGTAGTTTTTAGGTGCTGCTGTACATCGTGGTGTTATTTGTATG
CAGCCAACCTagtatttgaaaa Run BLAST on NCBI protein sequence of TCONS_00017331-protein >TCONS_00017331-protein ID=TCONS_00017331-protein|Name=TCONS_00017331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MNLRSHRNKLERASSSKELVSLSTVSIASYISPPKERKRTLHSLRDLPTD
TGKTGYGKLGENATSSTSIKQVSSTSSCKQPRSSSSTTITSPGPLARSSS
SRFQSTTSLKLKQSLSSASETPTKRRKTLKTAWIEEDDQPDQSTSAHSTS
SLKTISGKSINRLKTFTTSCRKKKTTKRKESNILTKEQKQKVEKILKEFN
KKQKSIRRNGTTQPNPRSQNQILNAANTSSIFDERYYGPGTVRLRTRSRR
NVRMILKTLEDYGDGSTLIDLIDYSKTVCQTEHCNLLVLHALKEAMKTQQ
VQTYNDLFVRQDCYDEFLEEEQQREKDKKMGQLAINTNSKTKIALKNPPL
KAPKGKRRTYL Run BLAST on NCBI transcript from alignment at sc0000264:197536..198857 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017331 ID=TCONS_00017331|Name=TCONS_00017331|organism=Clytia hemisphaerica|type=transcript|length=1322bp|location=Sequence derived from alignment at sc0000264:197536..198857 (Clytia hemisphaerica)
ttttcaaatactAGGTTGGCTGCATACAAATAACACCACGATGTACAGCA
GCACCTAAAAACTACACAACAACATCAAAAAACCACTCAACAACTTATTT
TCTTCCAACCAACAAATAATGCTGATAAAAACCAACCAAAAATACAACac
aacatcaacaacaacaacaccaaAACTATGAATCTTCGAAGTCACAGAAA
CAAACTTGAACGAGCTTCTTCATCTAAAGAATTAGTCTCCTTAAGCACAG
TCAGTATCGCATCTTACATTTCACCacctaaagaaagaaaaagaacacTT
CATTCACTTAGAGACCTGCCAACAGATACCGGTAAAACAGGATATGGCAA
ATTAGGTGAAAATGCAACATCATCAACATCAATCAAACAAGTATCGTCTA
CCTCAAGCTGTAAACAACCACGATCTTCCAGCTCGACAACAATAACTAGT
CCCGGACCTCTAGCCCGTTCTTCATCTTCACGTTTCCAGTCTACAACTTC
TCTCAAACTTAAGCAATCTCTATCAAGTGCGTCAGAAACACCTACTAAAC
GACGCAAAACACTTAAGACGGCTTGGATTGAAGAAGATGACCAACCAGAC
CAATCAACTTCGGCACATTCCACATCCTCGTTAAAAACAATCTCCGGTAA
AAGTATCAACCGCTTGAAAACATTTACAACATCCTGCCGTAAAAAGAAGA
CAACTAAACGGAAAGAAAGTAATATACTAACtaaagaacaaaaacaaaaa
gtggAGAAAATTCTTAAAGAGTTtaacaagaaacaaaaaagtatCCGACG
TAACGGCACTACTCAGCCCAACCCGAGAAGTCAAAACCAAATTTTAAACG
CTGCTAATACATCTTCAATATTCGATGAAAGATATTACGGTCCTGGAACG
GTACGTCTCCGCACGCGAAGCCGTCGAAATGTACGCATGATCTTGAAAAC
GTTAGAAGATTACGGTGACGGATCAACTTTAATTGATCTGATTGATTATT
CGAAAACAGTTTGCCAGACAGAACATTGTAACCTGCTTGTTCTCCACGCA
CTTAAGGAAGCTATGAAAACACAACAAGTTCAAACATACAATGATCTATT
CGTGAGACAGGATTGTTATGATGAGTTTTTGGAAGAAGAACAACAAAGAG
AGAAAGACAAAAAGATGGGTCAGCTTGCTATCAATACAAACTCGAAAACA
AAGATTGCACTTAAGAATCCACCATTGAAAGCTCCAAAGGGTAAACGAAG
AACTTACTTGTAACAACCCCTGATTTATAATATGAATATGGAATAAACAC
AAAATGAATAACTTAACAGAAC Coding sequence (CDS) from alignment at sc0000264:197536..198857 >TCONS_00017331 ID=TCONS_00017331|Name=TCONS_00017331|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at sc0000264:197536..198857 (Clytia hemisphaerica)
ATGAATCTTCGAAGTCACAGAAACAAACTTGAACGAGCTTCTTCATCTAA
AGAATTAGTCTCCTTAAGCACAGTCAGTATCGCATCTTACATTTCACCac
ctaaagaaagaaaaagaacacTTCATTCACTTAGAGACCTGCCAACAGAT
ACCGGTAAAACAGGATATGGCAAATTAGGTGAAAATGCAACATCATCAAC
ATCAATCAAACAAGTATCGTCTACCTCAAGCTGTAAACAACCACGATCTT
CCAGCTCGACAACAATAACTAGTCCCGGACCTCTAGCCCGTTCTTCATCT
TCACGTTTCCAGTCTACAACTTCTCTCAAACTTAAGCAATCTCTATCAAG
TGCGTCAGAAACACCTACTAAACGACGCAAAACACTTAAGACGGCTTGGA
TTGAAGAAGATGACCAACCAGACCAATCAACTTCGGCACATTCCACATCC
TCGTTAAAAACAATCTCCGGTAAAAGTATCAACCGCTTGAAAACATTTAC
AACATCCTGCCGTAAAAAGAAGACAACTAAACGGAAAGAAAGTAATATAC
TAACtaaagaacaaaaacaaaaagtggAGAAAATTCTTAAAGAGTTtaac
aagaaacaaaaaagtatCCGACGTAACGGCACTACTCAGCCCAACCCGAG
AAGTCAAAACCAAATTTTAAACGCTGCTAATACATCTTCAATATTCGATG
AAAGATATTACGGTCCTGGAACGGTACGTCTCCGCACGCGAAGCCGTCGA
AATGTACGCATGATCTTGAAAACGTTAGAAGATTACGGTGACGGATCAAC
TTTAATTGATCTGATTGATTATTCGAAAACAGTTTGCCAGACAGAACATT
GTAACCTGCTTGTTCTCCACGCACTTAAGGAAGCTATGAAAACACAACAA
GTTCAAACATACAATGATCTATTCGTGAGACAGGATTGTTATGATGAGTT
TTTGGAAGAAGAACAACAAAGAGAGAAAGACAAAAAGATGGGTCAGCTTG
CTATCAATACAAACTCGAAAACAAAGATTGCACTTAAGAATCCACCATTG
AAAGCTCCAAAGGGTAAACGAAGAACTTACTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017331-exon-sc0000264-1491911889:197536..198857 | TCONS_00017331-exon-sc0000264-1491911889:197536..198857 | Clytia hemisphaerica | exon |
| TCONS_00017331-exon-sc0000264-1510915933:197536..198857 | TCONS_00017331-exon-sc0000264-1510915933:197536..198857 | Clytia hemisphaerica | exon |
| TCONS_00017331-exon-sc0000264-1575043694:197536..198857 | TCONS_00017331-exon-sc0000264-1575043694:197536..198857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:197536..198857 . |
Blast
The following BLAST results are available for this feature:
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