TCONS_00017326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017326
Unique NameTCONS_00017326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017326 ID=TCONS_00017326|Name=TCONS_00017326|organism=Clytia hemisphaerica|type=transcript|length=809bp
tgaaGATTCTTCTAACCTAATCCAAGGAATCATTTGTTTCACCTTGATTC
TTTGTTCAAGATTCTGGTCTTTTTTGCGTTCCTTTGACATGAGCAAAAGT
ACAATGAGTGTTGAAGCATGTACCGATTTTAATTGAAGAGGAGCACATTC
TTGGGTGGAATTCGGAGCATTTAGTTCCAGTATTACAGTACTCCCTGGCC
CTTGTTTCCATATTTCATAAGTTTGGTGCAAGTttttgggtggttgtacc
tGATAGTTTTTTCCTCAAATACTGTGCTTGCGTTTACTTTTAACATAAAA
TCAGCAGGTTTGAGATGTTTTCAGTGTCTGGTTTGGATCTTTAGATTTGT
CAGAGGCTTGAGGGGCTGCAGATTCTGATGTGAGCTTTGTACTGTTCTCA
AGCTCTCTAAGAAACCTTTTCTTCATGAAATCTGTTTTTCCTGGATGAAG
ATCATTGAGTTTTCTGCTTGATTTTGGGTTGTTGTTGAGAATAACATTTG
GTGTAAGTGGGATTCGTGACATTGAGCAGTCCCTTGGCATTTTAGGGAGG
AACCTTGATTGTCGCCGTTGAGAGGGTATTGAAGTGGCTGATGAGAGGTC
AGTACTGTAATACTTTTGGTAGGTAAAGCGTACGGTGTTTATTTAGGAGA
TAATAACAATTGTGGTGTCAGCTGTTGTGATTGTTTGTTCAGATGTTTTG
GAGCTACTTTTGACATAATTGACGCTGGTATTTGAAGCTTTGGTTCTTTT
GTGTGGAAAGTGGATTGTATTTTCCTGACACTGTTGACAAAGGAAACCCA
GGACAGGCC
Run BLAST on NCBI

transcript from alignment at sc0000264:44974..45782

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017326 ID=TCONS_00017326|Name=TCONS_00017326|organism=Clytia hemisphaerica|type=transcript|length=809bp|location=Sequence derived from alignment at sc0000264:44974..45782 (Clytia hemisphaerica)
GGCCTGTCCTGGGTTTCCTTTGTCAACAGTGTCAGGAAAATACAATCCAC
TTTCCACACAAAAGAACCAAAGCTTCAAATACCAGCGTCAATTATGTCAA
AAGTAGCTCCAAAACATCTGAACAAACAATCACAACAGCTGACACCACAA
TTGTTATTATCTCCTAAATAAACACCGTACGCTTTACCTACCAAAAGTAT
TACAGTACTGACCTCTCATCAGCCACTTCAATACCCTCTCAACGGCGACA
ATCAAGGTTCCTCCCTAAAATGCCAAGGGACTGCTCAATGTCACGAATCC
CACTTACACCAAATGTTATTCTCAACAACAACCCAAAATCAAGCAGAAAA
CTCAATGATCTTCATCCAGGAAAAACAGATTTCATGAAGAAAAGGTTTCT
TAGAGAGCTTGAGAACAGTACAAAGCTCACATCAGAATCTGCAGCCCCTC
AAGCCTCTGACAAATCTAAAGATCCAAACCAGACACTGAAAACATCTCAA
ACCTGCTGATTTTATGTTAAAAGTAAACGCAAGCACAGTATTTGAGGAAA
AAACTATCaggtacaaccacccaaaaACTTGCACCAAACTTATGAAATAT
GGAAACAAGGGCCAGGGAGTACTGTAATACTGGAACTAAATGCTCCGAAT
TCCACCCAAGAATGTGCTCCTCTTCAATTAAAATCGGTACATGCTTCAAC
ACTCATTGTACTTTTGCTCATGTCAAAGGAACGCAAAAAAGACCAGAATC
TTGAACAAAGAATCAAGGTGAAACAAATGATTCCTTGGATTAGGTTAGAA
GAATCttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009698XLOC_009698Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017326-exon-sc0000264-1491911889:44974..45782TCONS_00017326-exon-sc0000264-1491911889:44974..45782Clytia hemisphaericaexon
TCONS_00017326-exon-sc0000264-1510915933:44974..45782TCONS_00017326-exon-sc0000264-1510915933:44974..45782Clytia hemisphaericaexon
TCONS_00017326-exon-sc0000264-1575043694:44974..45782TCONS_00017326-exon-sc0000264-1575043694:44974..45782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:44974..45782 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354777	0.172982	0.468647	0.327498	0.239219	0.315056	0.152041	0.213508	0.0996547	0.370315	0.539156	0.47256	0.235951	0.204198	0.134303	0.216191	0	0.227483	0.125712	0.0657743	0.0571698	0.167313	0.20339	0.123274	0.317424	0.453269	0.405392	0.259587	0.131258	0.0668658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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