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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017322 ID=TCONS_00017322|Name=TCONS_00017322|organism=Clytia hemisphaerica|type=transcript|length=956bp
TTTATCACCGCGCTCCTTTATTTTCGTTCAGATCGACGTGCGATGGAGCA
ACAACAACACGGAGGAGGGTTTATACCAGGCGCTCCTTCGTTGCTTACCA
TGGATGTTCCTGTACCTGACTTTTTAGAAGGAGAGTATTGGGATGAAGGA
GAAGAACCAAGTATGCATGAAGCTAAAAGAAGGTACAACCAACGTACAAG
GCCCAATGACGACGGGATGGACCCTAATGCTGGACACATCGGCCCTTCTG
GATTCTATCACGGCCCTGATGAACATTTCGGACCTGGTGGCCCTCATGGA
CCACCACCAATGCGTCCGCCCTTTGATGGAGGTCGATTTCCAGGACCACG
GCCTCGCTTTGATGGACCGCCGCCGCCACACGATTTTCATGGTCCACCGC
CAGGGCATTTCAACGAAGGAGAGGGCTACGATGAGAATTGGGAAGGTGGA
GGATACGAACCTCATCCTCCTTTCCAAGGACAATTTCAAGGTGGACCTAG
ATTCCGGCCACATGGTCCTCCTGGTCCAGGTTTTGGTCCTGGTGGACCCC
GTCCTCCTCGCATGAGAGGACCTCGCCCGAACTTCCATGGTGGTCGCCCA
CCACGCCCACCTTATTGAAAAGTTAGATTTTCATATGATGGAGAAGGAGT
TACGGTTCCAATGAATGAATGGATGTGCTTCGGCGTTTTGTTAGAGCTCT
GATAGAAAATGCAGTGAGCCAATATTGCTGGTTATCTTCTTTTACTTGGA
GATTGAAGAGCTTTTAGAACGATTTTGGTTATATTGTTTTACAAATAAAT
TCCCACCTttagtaaatatttttaatcTTGTAAGTAAAGAGAAAAATGAT
GGgatttttatgacaaaaattTATTACTTGTGTATTTCCAGTACCTTTTG
TgcggttttttattttttgaaaaagaaaacatttatatTTTCTGTTTCGT
TAAATT Run BLAST on NCBI protein sequence of TCONS_00017322-protein >TCONS_00017322-protein ID=TCONS_00017322-protein|Name=TCONS_00017322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
FITALLYFRSDRRAMEQQQHGGGFIPGAPSLLTMDVPVPDFLEGEYWDEG
EEPSMHEAKRRYNQRTRPNDDGMDPNAGHIGPSGFYHGPDEHFGPGGPHG
PPPMRPPFDGGRFPGPRPRFDGPPPPHDFHGPPPGHFNEGEGYDENWEGG
GYEPHPPFQGQFQGGPRFRPHGPPGPGFGPGGPRPPRMRGPRPNFHGGRP
PRPPY Run BLAST on NCBI transcript from alignment at sc0000264:375634..377053- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017322 ID=TCONS_00017322|Name=TCONS_00017322|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at sc0000264:375634..377053- (Clytia hemisphaerica)
TTTATCACCGCGCTCCTTTATTTTCGTTCAGATCGACGTGCGATGGAGCA
ACAACAACACGGAGGAGGGTTTATACCAGGCGCTCCTTCGTTGCTTACCA
TGGATGTTCCTGTACCTGACTTTTTAGAAGGTAAAACAACGATTTAGATT
TTTCTTGATATATTGAACTTCCATTTACCCACCATTCTAAAAGTAGTAGA
AAGAGAAAGATTTGAAAGTATATTTCAAAGTATGTGAACACTTTTTCCTC
TATTAAATGATGTATATATAATATATGTAGCACCAGTACTTGAAACAGGC
CTCTTTTTCTTCTTCATCAGTTTTCTTCTTCAATTTGTAAAATAATGAAA
TAATTTTGGGCTTATAACAATCCACTCATTACTCGCTTTCCAACGAGGTG
GAAATTTGTGAAAGTAAAGTCAAATTAAGTTTCCACATACTTTATAGACA
GAATTTAGAAAGAAAAATTGATTTGTGCTTTATCCTGAATAACTTTTTTG
ACTCGTTTTATGCAAATTACAACAAAGCTAATCAACTGAGTGTTACTAGT
TGATTACCAGGAAACTTGGTAAATTTGTCCACCTTTTTCTATAGGAGAGT
ATTGGGATGAAGGAGAAGAACCAAGTATGCATGAAGCTAAAAGAAGGTAC
AACCAACGTACAAGGCCCAATGACGACGGGATGGACCCTAATGCTGGACA
CATCGGCCCTTCTGGATTCTATCACGGCCCTGATGAACATTTCGGACCTG
GTGGCCCTCATGGACCACCACCAATGCGTCCGCCCTTTGATGGAGGTCGA
TTTCCAGGACCACGGCCTCGCTTTGATGGACCGCCGCCGCCACACGATTT
TCATGGTCCACCGCCAGGGCATTTCAACGAAGGAGAGGGCTACGATGAGA
ATTGGGAAGGTGGAGGATACGAACCTCATCCTCCTTTCCAAGGACAATTT
CAAGGTGGACCTAGATTCCGGCCACATGGTCCTCCTGGTCCAGGTTTTGG
TCCTGGTGGACCCCGTCCTCCTCGCATGAGAGGACCTCGCCCGAACTTCC
ATGGTGGTCGCCCACCACGCCCACCTTATTGAAAAGTTAGATTTTCATAT
GATGGAGAAGGAGTTACGGTTCCAATGAATGAATGGATGTGCTTCGGCGT
TTTGTTAGAGCTCTGATAGAAAATGCAGTGAGCCAATATTGCTGGTTATC
TTCTTTTACTTGGAGATTGAAGAGCTTTTAGAACGATTTTGGTTATATTG
TTTTACAAATAAATTCCCACCTTTAGTAAATATTTTTAATCTTGTAAGTA
AAGAGAAAAATGATGGGATTTTTATGACAAAAATTTATTACTTGTGTATT
TCCAGTACCTTTTGTGCGGTTTTTTATTTTTTGAAAAAGAAAACATTTAT
ATTTTCTGTTTCGTTAAATT Coding sequence (CDS) from alignment at sc0000264:375634..377053- >TCONS_00017322 ID=TCONS_00017322|Name=TCONS_00017322|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0000264:375634..377053- (Clytia hemisphaerica)
GAGAGTATTGGGATGAAGGAGAAGAACCAAGTATGCATGAAGCTAAAAGA
AGGTACAACCAACGTACAAGGCCCAATGACGACGGGATGGACCCTAATGC
TGGACACATCGGCCCTTCTGGATTCTATCACGGCCCTGATGAACATTTCG
GACCTGGTGGCCCTCATGGACCACCACCAATGCGTCCGCCCTTTGATGGA
GGTCGATTTCCAGGACCACGGCCTCGCTTTGATGGACCGCCGCCGCCACA
CGATTTTCATGGTCCACCGCCAGGGCATTTCAACGAAGGAGAGGGCTACG
ATGAGAATTGGGAAGGTGGAGGATACGAACCTCATCCTCCTTTCCAAGGA
CAATTTCAAGGTGGACCTAGATTCCGGCCACATGGTCCTCCTGGTCCAGG
TTTTGGTCCTGGTGGACCCCGTCCTCCTCGCATGAGAGGACCTCGCCCGA
ACTTCCATGGTGGTCGCCCACCACGCCCACCTTATTGATTTATCACCGCG
CTCCTTTATTTTCGTTCAGATCGACGTGCGATGGAGCAACAACAACACGG
AGGAGGGTTTATACCAGGCGCTCCTTCGTTGCTTACCATGGATGTTCCTG
TACCTGACTTTTTAGAAGGAGAGTATTGGGATGAAGGAGAAGAACCAAGT
ATGCATGAAGCTAAAAGAAGGTACAACCAACGTACAAGGCCCAATGACGA
CGGGATGGACCCTAATGCTGGACACATCGGCCCTTCTGGATTCTATCACG
GCCCTGATGAACATTTCGGACCTGGTGGCCCTCATGGACCACCACCAATG
CGTCCGCCCTTTGATGGAGGTCGATTTCCAGGACCACGGCCTCGCTTTGA
TGGACCGCCGCCGCCACACGATTTTCATGGTCCACCGCCAGGGCATTTCA
ACGAAGGAGAGGGCTACGATGAGAATTGGGAAGGTGGAGGATACGAACCT
CATCCTCCTTTCCAAGGACAATTTCAAGGTGGACCTAGATTCCGGCCACA
TGGTCCTCCTGGTCCAGGTTTTGGTCCTGGTGGACCCCGTCCTCCTCGCA
TGAGAGGACCTCGCCCGAACTTCCATGGTGGTCGCCCACCACGCCCACCT
TATTGATTTATCACCGCGCTCCTTTATTTTCGTTCAGATCGACGTGCGAT
GGAGCAACAACAACACGGAGGAGGGTTTATACCAGGCGCTCCTTCGTTGC
TTACCATGGATGTTCCTGTACCTGACTTTTTAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017322-exon-sc0000264-1575043694:376924..377053 | TCONS_00017322-exon-sc0000264-1575043694:376924..377053 | Clytia hemisphaerica | exon |
| TCONS_00017322-exon-sc0000264-1575043694:375634..376459 | TCONS_00017322-exon-sc0000264-1575043694:375634..376459 | Clytia hemisphaerica | exon |
| TCONS_00017322-exon-sc0000264-1510915933:376924..377053 | TCONS_00017322-exon-sc0000264-1510915933:376924..377053 | Clytia hemisphaerica | exon |
| TCONS_00017322-exon-sc0000264-1510915933:375634..376459 | TCONS_00017322-exon-sc0000264-1510915933:375634..376459 | Clytia hemisphaerica | exon |
| TCONS_00017322-exon-sc0000264-1491911889:376924..377053 | TCONS_00017322-exon-sc0000264-1491911889:376924..377053 | Clytia hemisphaerica | exon |
| TCONS_00017322-exon-sc0000264-1491911889:375634..376459 | TCONS_00017322-exon-sc0000264-1491911889:375634..376459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:375634..377053 - |
Blast
The following BLAST results are available for this feature:
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